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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Center for Functional Neuroimaging Technologies
 
Resource Report
Resource Website
1+ mentions
Center for Functional Neuroimaging Technologies (RRID:SCR_001423) CFNT access service resource, biomedical technology research center, service resource, training resource Biomedical technology research center that develops and applies innovative neuroimaging technologies and techniques to enable closer examination of the human brain, and thereby contribute to better understanding of the brain in health and disease. They develop new techniques and advance existing technologies for acquisition and analysis of functionally specific images of the working brain, with unprecedented physiological precision and spatiotemporal resolution. The research and development aims to improve and extend existing methods for non-invasive magnetic resonance image analysis and acquisition, electromagnetic source imaging, optical neuroimaging, and most recently, combined MR-PET neuroimaging. The Resource provides an essential interactive environment, within which an interdisciplinary team of highly skilled scientists, engineers, and clinicians with diverse expertise in multiple modalities and disciplines. The resource supports service use of the Center's facilities by neuroscientists throughout the country, provide extensive training opportunities for students, fellows, and staff scientists, and seek to advance the field of brain mapping through active dissemination of new knowledge and technology. mri, neuroimaging, pet, acquisition, analysis, brain, electromagnetic source imaging, optical neuroimaging, multimodal, magnetic resonance, eeg, meg, electrocorticography, information resource, optical imaging is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: Harvard Medical School; Massachusetts; USA
NIBIB 5P41EB015896-18 Free, Available for download, Freely available nlx_152644 http://www.nitrc.org/projects/cfnt SCR_001423 2026-09-05 06:33:21 1
Arredondo ANT fNIRS dataset1
 
Resource Report
Resource Website
Arredondo ANT fNIRS dataset1 (RRID:SCR_002653) AAF Data, AAF Data1, AF Data, AF Data1 data or information resource, data set THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 12, 2017.

Dataset in Bilingual exposure optimizes left-hemisphere dominance for selective attention processes in the developing brain by Arredondo, Su, Satterfield, & Kovelman (XX) Does early bilingual exposure alter the representations of cognitive processes in the developing brain? Theories of bilingual development have suggested that bilingual language switching might improve children''s executive function and foster the maturation of prefrontal brain regions that support higher cognition. To test this hypothesis, we used functional Near Infrared Spectroscopy to measure brain activity in Spanish-English bilingual and English-monolingual children during a visuo-spatial executive function task of attentional control (N=27, ages 7-13). Prior findings suggest that while young children start with bilateral activation for the task, it becomes right-lateralized with age (Konrad et al., 2005). Indeed monolinguals showed bilateral frontal activation, however young bilinguals showed greater activation in left language areas relative to right hemisphere and relative to monolinguals. The findings suggest that bilingual experience optimizes attention mechanisms in the language hemisphere, and highlight the importance of early experiences for neurodevelopmental plasticity of higher cognition. These data are made available from Ioulia Kovelman''s Language and Literacy Lab at University of Michigan and may be exported through the NIF Data Federation. To cite these data please use this text Data were published by Arredondo et al. (XX) and made available via the NIF at XX
attention, functional near infrared spectroscopy, fnirs, bilingualism, language, child, ant, developing, brain is used by: NIF Data Federation
has parent organization: University of Michigan; Ann Arbor; USA
Healthy THIS RESOURCE IS NO LONGER IN SERVICE nlx_156086 SCR_002653 ANT fNIRS Dataset1, ANT fNIRS Data Set1, Arredondo ANT fNIRS Data Set 1, Arredondo ANT fNIRS Data Set1, ANT fNIRS Data Set 1 2026-09-05 06:33:23 0
Brain Bee
 
Resource Report
Resource Website
1+ mentions
Brain Bee (RRID:SCR_002248) IBB k-12 program resource, training resource A world-wide neuroscience competition for high school students that aims to motivate them to learn about the brain and to pursue neuroscience careers. Brain Bee tests knowledge of the human brain, including topics like intelligence, emotions, memory, sleep, vision, hearing, sensations, Alzheimer's disease, Parkinson's disease, stroke, schizophrenia, epilepsy, depression, addictions and brain research. k-12, competition, international, education, career, brain, neuroscience, brain bee, training, intelligence, emotion, memory, sleep, vision, hearing, sensation, alzheimer's disease, parkinson's disease, stroke, schizophrenia, epilepsy, depression, addiction, neuroanatomy, neurohistology, microscope, brain imaging, neuroimaging, diagnosis, training material For high school students nlx_155566 SCR_002248 International Brain Bee 2026-09-05 06:33:22 1
Beijing: Eyes Open Eyes Closed Study
 
Resource Report
Resource Website
Beijing: Eyes Open Eyes Closed Study (RRID:SCR_001507) Beijing EOEC data or information resource, data set Data set of 48 healthy controls from a community (student) sample from Beijing Normal University in China with 3 resting state fMRI scans each. During the first scan participants were instructed to rest with their eyes closed. The second and third resting state scan were randomized between resting with eyes open versus eyes closed. In addition this dataset contains a 64-direction DTI scan for every participant. The following data are released for every participant: * 6-minute resting state fMRI scan (R-fMRI) * MPRAGE anatomical scan, defaced to protect patient confidentiality * 64-direction diffusion tensor imaging scan (2mm isotropic) * Demographic information and information on the counterbalancing of eyes open versus eyes closed. early adult human, resting state, fmri, diffusion tensor imaging, resting state fmri, eyes open, eyes closed, neuroimaging, mprage, image collection, brain is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: Beijing Normal University; Beijing; China
has parent organization: 1000 Functional Connectomes Project
Healthy National Natural Science Foundation of China 30770594;
National High Technology Program of China (863) 2008AA02Z405
Creative Commons Attribution-NonCommercial License nlx_152810 SCR_001507 Beijing Eyes Open Eyes Closed Study, Beijing Normal University State Key Laboratory of Cognitive Neuroscience and Learning Eyes Open Eyes Closed Sample, Eyes Open Eyes Closed Sample, BNU Eyes Open Eyes Closed Sample 2026-09-05 06:33:21 0
Automated recognition of brain region mentions in neuroscience literature.
 
Resource Report
Resource Website
1+ mentions
Automated recognition of brain region mentions in neuroscience literature. (RRID:SCR_002731) WhiteText data or information resource, data set Freely available corpus of manually annotated brain region mentions created to facilitate text mining of neuroscience literature. The corpus contains 1,377 abstracts with 18,242 brain region annotations. Interannotator agreement was evaluated for a subset of the documents, and was 90.7% and 96.7% for strict and lenient matching respectively. We observed a large vocabulary of over 6,000 unique brain region terms and 17,000 words. For automatic extraction of brain region mentions we evaluated simple dictionary methods and complex natural language processing techniques. The dictionary methods based on neuroanatomical lexicons recalled 36% of the mentions with 57% precision. The best performance was achieved using a conditional random field (CRF) with a rich feature set. Features were based on morphological, lexical, syntactic and contextual information. The CRF recalled 76% of mentions at 81% precision, by counting partial matches recall and precision increase to 86% and 92% respectively. We suspect a large amount of error is due to coordinating conjunctions, previously unseen words and brain regions of less commonly studied organisms. We found context windows, lemmatization and abbreviation expansion to be the most informative techniques. We encourage you to test new methods and applications of the dataset. Please contact us if you do, we would like to hear about and link to your work. The abstracts are from PubMed/Medline, specifically The Journal of Comparative Neurology. brain region, annotation, journal of comparative neurology, neuroanatomy, brain is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: PubMed
is related to: MEDLINE
has parent organization: University of British Columbia; British Columbia; Canada
PMID:19750194 THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-24027 http://www.nitrc.org/projects/whitetext/ SCR_002731 WhiteText - annotated neuroscience text 2026-09-05 06:33:23 3
GSE4271
 
Resource Report
Resource Website
50+ mentions
GSE4271 (RRID:SCR_003643) GSE4271 data or information resource, data set Curated data set from a study that investigated 77 primary high-grade astrocytomas and 23 matched recurrences so that changes in gene expression related to both survival and disease progression can be identified. Samples in the study include WHO grade III and IV astrocytomas with a wide range of survival times. adult human, brain, gene expression is related to: Gene Expression Omnibus
has parent organization: RanchoBiosciences
Cancer, Astrocytoma Free, Public nlx_157794 SCR_003643 2026-09-05 06:33:24 62
Neurophysiology Imaging Facility
 
Resource Report
Resource Website
Neurophysiology Imaging Facility (RRID:SCR_004080) NIF access service resource, core facility, service resource Neurophysiology imaging core facility that provides anatomical and functional MRI scanning for researchers in the National Institute of Mental Health (NIMH), the National Eye Institute (NEI), and the National Institute for Neurological Disorders and Stroke (NINDS). The shared intramural resource centers on a cutting-edge 4.7T vertical bore scanner dedicated to imaging of nonhuman primates. mri, fmri, neuroimaging, neurophysiology, brain has parent organization: National Institute of Mental Health NIMH ;
NINDS ;
NEI
nlx_158530 SCR_004080 Neurophysiology Imaging Facility (NIF) 2026-09-05 06:33:25 0
National Resource for Quantitative Functional MRI
 
Resource Report
Resource Website
1+ mentions
National Resource for Quantitative Functional MRI (RRID:SCR_006716) Resource for Quantitative Functional MRI biomedical technology research center, training resource Biomedical technology research center that provides expertise for the design of quantitative magnetic resonance imaging (MRI) and spectroscopy (MRS) data acquisition and processing technologies that facilitate the biomedical research of a large community of clinicians and neuroscientists in Maryland and throughout the USA. These methods allow noninvasive assessment of changes in brain anatomy as well as in tissue metabolite levels, physiology, and brain functioning while the brain is changing size during early development and during neurodegeneration, i.e. the changing brain throughout the life span. The Kirby Center has 3 Tesla and 7 Tesla state of the art scanners equipped with parallel imaging (8, 16, and 32-channel receive coils) and multi-transmit capabilities. CIS has an IBM supercomputer that is part of a national supercomputing infrastructure. Resources fall into the following categories: * MRI facilities, image acquisition, and processing * Computing facilities and image analysis * Novel statistical methods for functional brain imaging * Translating laboratory discoveries to patient treatment quantitative magnetic resonance imaging, magnetic resonance spectroscopy, mri, fmri, function, metabolism, physiology, brain, neurodevelopment, neurodegeneration, image acquisition, image processing, computing, image analysis, statistical method, neuroimaging, development has parent organization: Kennedy Krieger Institute
has parent organization: Johns Hopkins University; Maryland; USA
NIBIB P41 EB015909;
NCRR P41 RR015241
nlx_152634 http://mri.kennedykrieger.org/nationalresource/index.html SCR_006716 Resource for Quantitative Functional Magnetic Resonance Imaging 2026-09-05 06:33:27 1
Integrated Nervous System Connectivity
 
Resource Report
Resource Website
Integrated Nervous System Connectivity (RRID:SCR_006391) NSC data or information resource, data set A data set of connectivity statements from BAMS, CoCoMac, BrainMaps, Connectome Wiki, the Hippocampal-Parahippocampal Table of Temporal-Lobe.com, and Avian Brain Circuitry Database. The data set lists which brain sites connectivity is to and from, the organism connectivity is mapped in, and journal references. connectivity, nervous system, macaque, brain, bird, data set uses: Avian Brain Circuitry Database
uses: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat
uses: Connectome Wiki
uses: BrainMaps.org
uses: CoCoMac
uses: Brain Architecture Management System
uses: BlueBrain Bluima Connectivity
is used by: NIF Data Federation
has parent organization: Integrated
Data are licensed by their respective owners, Use and distribution is subject to the terms of use by the original resource nif-0000-07732 https://legacy.neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-8 https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-8, http://neuinfo.org/nif/nifgwt.html?query=nif-0000-07732, https://www.neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nif-0000-07732-1 SCR_006391 NIF Integrated Nervous System Connectivity View, Neuroscience Information Framework Integrated Nervous System Connectivity, Integrated NSC View, Integrated NSC, NIF NSC, NIF Integrated NSC, Integrated Nervous System Connectivity View, Nervous System Connectivity 2026-09-05 06:33:27 0
MRC London Neurodegenerative Diseases Brain Bank
 
Resource Report
Resource Website
10+ mentions
MRC London Neurodegenerative Diseases Brain Bank (RRID:SCR_013839) biomaterial supply resource, material resource A biomaterial supply resource which provides high quality, clinically and neuropathologically well-characterised human brain and spinal cord tissue. The Brain Bank focuses on neurodegenerative diseases such as Alzheimer’s Disease (AD), Frontotemperal dementias (FTD) and Motor Neurone Disease (MND). However, it also contains tissues for the study of HIV, Autism and Schizophrenia, and movement disorders. biomaterial supply resource, brain, brain tissue, brain bank, neurodegenerative disorder, neurodegenerative disease, spinal cord tissue is listed by: Multiple Sclerosis Discovery Forum
is related to: Multiple Sclerosis Discovery Forum
has parent organization: King's College London; London; United Kingdom
Medical Research Council Available to the research community SCR_013839 The Brain Bank 2026-09-05 06:32:56 31
Human Brain Tissue Bank
 
Resource Report
Resource Website
Human Brain Tissue Bank (RRID:SCR_013837) HBTB biomaterial supply resource, material resource A biomaterial resource which stores and distributes dissected human brain samples and topographically oriented tissue blocks. Most brains were removed from the skull and frozen within 2-6 hours after death. The microdissection of 260 different brain nuclei is performed on frozen brains and the samples are kept in -70ºC. Materials must be studied in the course of an approved research project, which has scientific aims and is devoid of any commercial profit for the researches involved and for their respective institutions. biomaterial supply resource, brain, brain sample, tissue repository is listed by: Multiple Sclerosis Discovery Forum
is related to: BrainNet Europe
is related to: Multiple Sclerosis Discovery Forum
Free, Available for the research community, The community can contribute to this resource SCR_013837 Budapest Human Brain Tissue Bank, Human Brain Tissue Bank Budapest 2026-09-05 06:32:56 0
Loyola University Medical Center / Hines VA Brain Bank
 
Resource Report
Resource Website
Loyola University Medical Center / Hines VA Brain Bank (RRID:SCR_013277) biomaterial supply resource, material resource THIS RESOURCE IS NO LONGER IN SERVICE, documented August 31, 2016. A medical center with a neuropathology research program focused on the normal and abnormal aging process of the central nervous system and a funding source for research. The center serves as a collection site for brains in order to study normal aging and neurodegenerative diseases like Alzheimer's. late adult human, neuropathology, autopsy, alzheimer's disease, neurodegenerative disease, age-matched control, normal control, muscle, nerve, brain, brain tissue, tissue, neuropathology is listed by: One Mind Biospecimen Bank Listing
has parent organization: Loyola University Chicago Stritch School of Medicine; Illinois; USA
Alzheimer's disease, Neurodegenerative disease, Age-matched control, Aging THIS RESOURCE IS NO LONGER IN SERVICE nlx_144052 http://www.stritch.luc.edu/depts/path/residency/anatomic_pathology.htm#Neuropathology SCR_013277 Loyola University / Hines Brain Bank, Loyola University Medical Center/Hines VA Brain Bank, Loyola University Brain Bank 2026-09-05 06:32:55 0
exact Low Resolution Electromagnetic Tomography
 
Resource Report
Resource Website
100+ mentions
exact Low Resolution Electromagnetic Tomography (RRID:SCR_013830) eLORETA software application, software resource Software application which computes cortical three-dimensional distribution of current density of the brain based on the scalp-recorded electric potential distribution. The exact low resolution brain electromagnetic tomography method has the property of exact localization to test point sources, yielding images of current density with exact localization, albeit with low spatial resolution. eLORETA has no localization bias even in the presence of structured noise. Deep structures, such as the anterior cingulate cortex and mesial temporal lobes, can be correctly localized with these methods. LORETA, EEG, MEG, brain, image, electromagnetic tomography is related to: Low Resolution Electromagnetic Tomography
is related to: sLORETA
is related to: sLORETA
has parent organization: University of Zurich; Zurich; Switzerland
Free, Not ready for public distribution, Must have administrator rights http://www.uzh.ch/keyinst/loretaOldy.htm SCR_013830 Exact Low Resolution Brain Electromagnetic Tomography 2026-09-05 06:32:56 279
Hierarchical Region Splitting
 
Resource Report
Resource Website
1+ mentions
Hierarchical Region Splitting (RRID:SCR_016398) HRS algorithm resource, software resource Algorithm for computational imaging of MRI data that detects and quantifies ischemic core–penumbra using only a single MRI modality (T2- or diffusion-weighted imaging, T2WI/DWI). It can be used with 3D data on lesions and normal-appearing brain matter (NABM) volumes. mri, neuroimaging, modality, t2, diffusion, 3d, brain, lesion, nabm, core, penumbra, computation, hypoxia, ischemic PMID:22929436 Freely available SCR_016398 Hierarchical Region Splitting (HRS) 2026-09-05 06:33:01 1
elmr
 
Resource Report
Resource Website
elmr (RRID:SCR_017249) software resource, software toolkit Software tool as support for working with light and electron microscopy fly brain data. Part of suite of R packages based on NeuroAnatomy Toolbox. Provides tools to move between adult brain EM and light level data, emphasising interaction between CATMAID web application and R Neuroanatomy Toolbox package. support, working, light, electron, microscopy, fly, brain, data is related to: NeuroAnatomy Toolbox Free, Available for download, Freely available https://jefferis.github.io/elmr/ SCR_017249 2026-09-05 06:33:02 0
Neurolucida Explorer
 
Resource Report
Resource Website
100+ mentions
Neurolucida Explorer (RRID:SCR_017348) data analytics software, software application, software resource Companion analytical software for Neurolucida and Neurolucida 360, designed to perform extensive morphometric analysis on neuron reconstructions, serial section reconstructions, and brain maps. Morphometric, analysis, neuron, reconstruction, section, brain, map, mbfbioscience, MBF Bioscience SCR_017348 2026-09-05 06:33:02 116
BVA import/export EEGLAB plugin
 
Resource Report
Resource Website
1+ mentions
BVA import/export EEGLAB plugin (RRID:SCR_016333) bva-io software application, software resource, software toolkit Software package for interfacing the Brain Vision Analyser data files (load/save) for ongoing development of Matlab routines . This package is also compatible with the EEGLAB software, and may be uncompressed in the plugin folder of this software. interfacing, brain, vision, analyser, data, file, load, save, Matlab, routine, compatible, EEGLAB is related to: SourceForge
is related to: EEGLAB
is related to: MATLAB
Free, Available for download, Freely available SCR_016333 Brain Vision Analyser 2026-09-05 06:33:01 4
DCBC toolbox
 
Resource Report
Resource Website
DCBC toolbox (RRID:SCR_022176) software resource, software toolkit Software Python toolbox for brain parcellation evaluation. brain parcellation evaluation, brain, parcellation evaluation, brain parcellation Free, Available for download, Freely available SCR_022176 DCBC 2026-09-05 06:33:09 0
zfishbook
 
Resource Report
Resource Website
1+ mentions
zfishbook (RRID:SCR_006896) zfishbook biomaterial supply resource, material resource Collection of revertible protein trap gene-breaking transposon (GBT) insertional mutants in zebrafish with active or cryopreserved lines from initially identified lines. Open to community-wide contributions including expression and functional annotation and represents world-wide central hub for information on how to obtain these lines from diverse members of International Zebrafish Protein Trap Consortium (IZPTC) and integration within other zebrafish community databases including Zebrafish Information Network (ZFIN), Ensembl and National Center for Biotechnology Information. Registration allows users to save their favorite lines for easy access, request lines from Mayo Clinic catalog, contribute to line annotation with appropriate credit, and puts them on optional mailing list for future zfishbook newletters and updates. gene-breaking transposon, expression-tagged, revertible mutation, gene, transposon, mutation, mutant, brain, muscle, skin, secretory, cardiac, brain line, muscle line, skin line, secretory line, cardiac line, plasmid, expression, functional annotation, gene-breaking transposon line, gene-break transposon mutagenesis, cell line, annotation, embryonic zebrafish, larval zebrafish, bio.tools is listed by: One Mind Biospecimen Bank Listing
is listed by: Debian
is listed by: bio.tools
is related to: Addgene
is related to: Zebrafish International Resource Center
has parent organization: Mayo Clinic Minnesota; Minnesota; USA
Mayo Clinic Cancer Center ;
Mayo Foundation ;
NHGRI HG006431;
NIDA DA14546;
NIGMS GM63904
PMID:22067444 Free, Freely available biotools:zfishbook, nlx_151613 https://bio.tools/zfishbook SCR_006896 book, z fish book, zfishbook, fish, z 2026-09-05 06:32:38 4
PyMVPA
 
Resource Report
Resource Website
100+ mentions
PyMVPA (RRID:SCR_006099) PyMVPA software application, software resource, software toolkit A Python package intended to ease statistical learning analyses of large datasets. It offers an extensible framework with a high-level interface to a broad range of algorithms for classification, regression, feature selection, data import and export. While it is not limited to the neuroimaging domain, it is eminently suited for such datasets. PyMVPA is truly free software (in every respect) and additionally requires nothing but free-software to run. Decoding patterns of neural activity onto cognitive states is one of the central goals of functional brain imaging. Standard univariate fMRI analysis methods, which correlate cognitive and perceptual function with the blood oxygenation-level dependent (BOLD) signal, have proven successful in identifying anatomical regions based on signal increases during cognitive and perceptual tasks. Recently, researchers have begun to explore new multivariate techniques that have proven to be more flexible, more reliable, and more sensitive than standard univariate analysis. Drawing on the field of statistical learning theory, these new classifier-based analysis techniques possess explanatory power that could provide new insights into the functional properties of the brain. However, unlike the wealth of software packages for univariate analyses, there are few packages that facilitate multivariate pattern classification analyses of fMRI data. This Python-based, cross-platform, open-source software toolbox software toolbox for the application of classifier-based analysis techniques to fMRI datasets makes use of Python's ability to access libraries written in a large variety of programming languages and computing environments to interface with the wealth of existing machine learning packages. python, machine learning, fmri, eeg, neuroimaging, image analysis, scripting, multivariate pattern analysis, brain, meg, extracellular recording, algorithm, reusable library, analyze, c, console (text based), eeg, meg, electrocorticography, frequency domain, independent component analysis, linear, modeling, magnetic resonance, multivariate analysis, nifti, nonlinear, os independent, pet, spect, principal component analysis, python, regression, spatial transformation, statistical operation, temporal transformation, workflow is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: neurodebian
is related to: CoSMoMVPA
has parent organization: Dartmouth College; New Hampshire; USA
has parent organization: Otto-von-Guericke University Magdeburg; Saxony-Anhalt; Germany
German Academic Exchange Service PPP-USA D/05/504/7;
NIMH MH080526;
NSF SBE 0751008;
James McDonnell Foundation 220020127
PMID:19184561
PMID:19212459
PMID:20582270
MIT License nlx_151596 http://www.nitrc.org/projects/pymvpa SCR_006099 Python MVPA, Multivariate Pattern Analysis in Python, PyMVPA - Multivariate Pattern Analysis in Python 2026-09-05 06:32:37 144

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