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http://rebrain.2045.com/

The internet-laboratory will present records (publications) of the group of theorist researches, who joined their efforts for collective intellectual works with the goal to understand the mechanisms of operation of human brain in general and in all details, which are necessary for the subsequent artificial re-creation of these mechanisms. The main initial task of the laboratory will be creation of open-access scientific, technological and engineering internet-resource in a form of a specialized database of knowledge on mechanisms of brain work. It is supposed that as a result of the planned work at the end of 2015 the project''s team will elaborate the full detailed description of the mechanisms of human brain. It will be possible to use this description to make (in yrs. 2018-2020) a full scale working analog of the human brain, based on technological (not biological) informational elements and devices. At the present stage the team for the project is under formation. It will include 21 persons of an advanced research level with background in physics and biophysics. The whole work will be divided into overlapping zones of responsibility. All basic elements of the project will be discussed in detail at general sessions of the team and in local group consultations. * Preliminary stage (2011-2012): The main working instrument of the project at this stage will be the internet-laboratory. * The working stage (2013-2015): The forming of the program and of the methods of work will proceed in the course of the preliminary stage of the project. To apply for taking part in the project please write to: shkolamozg (at) ru.ru (Only serious suggestions will be considered).

Proper citation: Russia 2045: Brain Reverse Engineering Lab (RRID:SCR_004324) Copy   

•   Source: SciCrunch Registry
  

http://epigraph.mpi-inf.mpg.de/WebGRAPH/

A software for genome and epigenome analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: EpiGRAPH (RRID:SCR_004326) Copy   

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http://www.qiqqa.com/

Qiqqa is a free reference management tool that provides all the tools you need to manage your documents and notes effectively, visualize your ideas, and find insights you would have missed otherwise. Engineered by academics, its mission is to make your research life easier. Qiqqa allows users to annotate PDF''s, assign tags, share documents and offers cloud storage for a nominal fee. We help academics, researchers, and professionals manage all their PDFs and get more out of them, with our award winning Qiqqa software. * PDF management, OCR, reading, annotation * Unique tools to understand and discover * Cloud sync, cite, and much much more * Free. Trusted by academia and industry for all five stages of the knowledge lifecycle. Add all your papers, and it helps you do all the rest, quicker. # Organize # Discover # Review and Understand # Collaborate # Create

Proper citation: qiqqa (RRID:SCR_004440) Copy   

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http://www.meri.org

A nonprofit medical teaching and training school in Memphis, Tennessee qualified under section 501 (c) (3) of the Internal Revenue Code. The MERI conducts state-of-the-art, hands-on educational courses for physicians, nurses and other medical professionals from across the country and around the world. At the MERI, medical professionals are introduced to the latest innovations in medicine, and have the opportunity to learn first-hand about the most up-to-date medical techniques and technologies. The MERI supports research in all specialties by providing the sponsor with the most effective environment for achieving maximal outcomes for their studies. Through our Mobile MERI unit, we are proud to provide courses and support to our sponsors off-site anywhere in the continental United States. Our dedicated course specialists offer customer service, provide safe and efficient transport of equipment and ensure a quality training and educational experience at the off-site location.

Proper citation: Medical Education and Research Institute - MERI (RRID:SCR_004202) Copy   

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https://bcbio-nextgen.readthedocs.org/en/latest/

A python toolkit providing best-practice pipelines for fully automated high throughput sequencing analysis.

Proper citation: bcbio-nextgen (RRID:SCR_004316) Copy   

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http://www.healthsystem.virginia.edu/internet/crr/ligand.cfm

This Core at the University of Virginia employs state-of-the-art methods to quantitate peptide and steroid reproductive hormones in blood and tissue. It also develops new methodology, prepares labeled reagents for immunoassays, immunocytochemistry and binding studies and assists in the transfer of technology to participating investigators. Available services: AMH ELISA, 3-ALPHA DIOL G ELISA (ON HOLD), ANDROSTENEDIONE RIA, CORTISOL HUMAN IMMULITE, CORTICOSTERONE RIA, DHEA ELISA, DHEA-SO4 HUMAN IMMULITE, DHT NON EXTRACTION RIA (ON HOLD), ESTRADIOL HUMAN & MOUSE BECKMAN COULTER RIA, ESTRADIOL RAT SIEMENS RIA, ESTRONE- RIA, FSH HUMAN IMMULITE, IGF-1 HUMAN IMMULITE, INHIBIN-A ELISA, INHIBIN-B ELISA, INSULIN HUMAN IMMULITE, LH HUMAN IMMULITE, MOUSE FSH RIA, MOUSE LH SANDWICH IRMA, PROGESTERONE RIA, PROINSULIN RIA, PROLACTIN HUMAN IMMULITE, 17a-OH-PROGESTERONE RIA, RAT FSH RIA, RAT LH SANDWICH IRMA, SHBG HUMAN IMMULITE, TESTOSTERONE RIA, SENSITIVE ESTRADIOL HUMAN & RAT RIA, SENSITIVE PROGESTERONE RIA, SENSITIVE TESTOSTERONE - RIA

Proper citation: UVA Center for Research in Reproduction Ligand Assay and Analysis Core (RRID:SCR_004318) Copy   

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http://www.ebi.ac.uk/pdbe/

The European resource for the collection, organization and dissemination of data on biological macromolecular structures. In collaboration with the other worldwide Protein Data Bank (wwPDB) partners - the Research Collaboratory for Structural Bioinformatics (RCSB) and BioMagResBank (BMRB) in the USA and the Protein Data Bank of Japan (PDBj) - they work to collate, maintain and provide access to the global repository of macromolecular structure data. The main objectives of the work at PDBe are: * to provide an integrated resource of high-quality macromolecular structures and related data and make it available to the biomedical community via intuitive user interfaces. * to maintain in-house expertise in all the major structure-determination techniques (X-ray, NMR and EM) in order to stay abreast of technical and methodological developments in these fields, and to work with the community on issues of mutual interest (such as data representation, harvesting, formats and standards, or validation of structural data). * to provide high-quality deposition and annotation facilities for structural data as one of the wwPDB deposition sites. Several sophisticated tools are also available for the structural analysis of macromolecules.

Proper citation: PDBe - Protein Data Bank in Europe (RRID:SCR_004312) Copy   

•   Source: SciCrunch Registry
  

http://www.dana.org/danaalliances/programs/graymatters/

THIS RESOURCE IS NO LONGER IN SERVICE, documented on September 06, 2013. Gray Matters is a radio series on brain topics that has been produced since 1994 by Public Radio International in association with the Dana Alliance. More than 25 programs have been created on topics ranging from stress, neuroethics, learning throughout life and sports, fitness and the Brain. Dana Alliance members serve as advisers to Gray Matters programming and are interviewed during the programs. The transcripts are also available.

Proper citation: Gray Matters (RRID:SCR_004433) Copy   

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https://nda.nih.gov/

The National Institute of Mental Health Data Archive (NDA) makes available human subjects data collected from hundreds of research projects across many scientific domains. Research data repository for data sharing and collaboration among investigators. Used to accelerate scientific discovery through data sharing across all of mental health and other research communities, data harmonization and reporting of research results. Infrastructure created by National Database for Autism Research (NDAR), Research Domain Criteria Database (RDoCdb), National Database for Clinical Trials related to Mental Illness (NDCT), and NIH Pediatric MRI Repository (PedsMRI).

Proper citation: NIMH Data Archive (RRID:SCR_004434) Copy   

•   Source: SciCrunch Registry
  

http://www.origene.com.cn/

A commercial antibody vendor.

Proper citation: Origene China (RRID:SCR_004436) Copy   

•   Source: SciCrunch Registry
  

http://imageweb.zoo.ox.ac.uk/pub/2009/citobase/cito-20100528-1.6/cito-content/owldoc/

An ontology for describing the nature of reference citations in scientific research articles and other scholarly works, both to other such publications and to Web information resources, and for publishing these descriptions on the Semantic Web. Citation are described in terms of the factual and rhetorical relationships between citing publication and cited publication, the in-text and global citation frequencies of each cited work, and the nature of the cited work itself, including its publication and peer review status. CiTO is useful both for the annotation of bibliographic reference lists and for the visualization of citation networks. CiTO is written in the Web Ontology Language OWL, uses the namespace http://purl.org/net/cito/, and is available from http://purl.org/net/cito/. This site uses content negotiation to deliver to the user an OWLDoc Web version of the ontology if accessed via a Web browser, or the OWL ontology itself if accessed from an ontology management tool such as Protege 4 (http://protege.stanford.edu/). Collaborative work is under way to harmonize CiTO with other ontologies describing bibliographies and the rhetorical structure of scientific discourse.

Proper citation: CiTO - the Citation Typing Ontology (RRID:SCR_004430) Copy   

•   Source: SciCrunch Registry
  

http://noble.gs.washington.edu/proj/qvality/

qvality estimates q-values and posterior error probabilities directly from score distributions. The method can be accessed via a web interface or downloaded as stand-alone software (C++ source code and binaries are available under MIT license). The qvality web server allows you to use qvality to compute posterior error probability and q-values for your data. There are two input modes: *Input the empirical score distribution and a corresponding null score distribution. The two inputs do not have to contain the same numbers of scores. *Input only the empirical p-value distribution. In this case, you must use p-values rather than raw scores. In either mode, the output is the same: a three-column file in which the first column contains sorted observed scores, the second column contains estimated q-values, and the third column contains estimated posterior error probabilities. Qvality is a C++ program for estimating two types of standard statistical confidence measures: the q-value, which is an analog of the p-value that incorporates multiple testing correction, and the posterior error probability (PEP, also known as the local false discovery rate), which corresponds to the probability that a given observation is drawn from the null distribution. In computing q-values, qvality employs a standard bootstrap procedure to estimate the prior probability of a score being from the null distribution; for PEP estimation, qvality relies upon non-parametric logistic regression. Relative to other tools for estimating statistical confidence measures, qvality is unique in its ability to estimate both types of scores directly from a null distribution, without requiring the user to calculate p-values.

Proper citation: qvality - Nonparametric estimation of posterior error probabilities (RRID:SCR_004309) Copy   

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https://www.uab.edu/medicine/alzheimers/

The UAB Alzheimer's Disease Center provides comprehensive treatment for Alzheimer's patients while also promoting research for the prevention and cure of Alzheimer's disease and related disorders. The ADC is an interdisciplinary program of scientists working in areas including neurology, psychiatry, genetics, and psychology. The Center provides comprehensive treatment and promotes research for the prevention and/or cure of Alzheimer's disease and other related disorders with memory loss and impaired cognition. A major emphasis of research is the maintenance of a clinical research database comprised of neurological, medical, and neuropsychological test data from participants seen in the ADRC Clinical study since 1999, many of whom have been followed for several years in the study.

Proper citation: UAB Alzheimer's Disease Center (RRID:SCR_004305) Copy   

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http://neurosciencenews.com/neuroscience-books/

Favorite and most desired neuroscience books, and books in fields related to neuroscience, listed by Neuroscience News staff members. You may search for books or browse by category. If you don''t see your favorite neuroscience books, or related science books for sale on the site, they want you to let them know which neuroscience books they should include.

Proper citation: Neuroscience News: Neuroscience Books (RRID:SCR_004308) Copy   

•   Source: SciCrunch Registry
  

http://www.neuroscience.iastate.edu/

The Neuroscience Program at Iowa State University has a philosophy based on the balanced combination of mentoring, general curriculum and frontier collaborative research to teach graduate students essential theoretical, research, teaching, writing and presentation skills and to prepare students for the competitive environment in academia and industry. The program reflects the structure of contemporary neuroscience which has become a diverse and inter-disciplinary field. Students of diverse educational, ethnic and national backgrounds are encouraged to apply to the program. Participating Departments in Neuroscience * Animal Science * Biochemistry, Biophysics and Molecular Biology * Biomedical Sciences * Chemical and Biological Engineering * Chemistry * Computer Science * Genetics, Development and Cell Biology * Kinesiology * Psychology

Proper citation: Iowa State University Neuroscience Program (RRID:SCR_004466) Copy   

•   Source: SciCrunch Registry
  

http://stores.columbiabiosciences.com/

An Antibody supplier

Proper citation: Columbia Biosciences Corporation (RRID:SCR_004347) Copy   

•   Source: SciCrunch Registry
  

http://diabetes.wikia.com/wiki/Diabetes_Wiki

Diabetes Wiki is a wiki where people with diabetes share personal stories, and build a database of helpful information. Categories include News, What is Diabetes?, Managing Diabetes, Impact of Diabetes, and more. Additionally, contribute to blog posts and the forum.

Proper citation: Diabetes Wiki (RRID:SCR_004220) Copy   

•   Source: SciCrunch Registry
  

https://github.com/dsturg/Spanki

A set of tools to facilitate analysis of alternative splicing from RNA-SEQ data.

Proper citation: Spanki (RRID:SCR_004469) Copy   

•   Source: SciCrunch Registry
  

http://www.hhs.gov/open/stayconnected

THIS RESOURCE IS NO LONGER IN SERVICE, documented August 29, 2016. Two types of tools are presently available, widgets and RSS. Widgets are code-bearing graphic elements that allow you add Department of Health and Human Services (HHS) content or functionality to your Web product. RSS are syndication feeds that allow you to automatically import HHS content into your Web product. You may search by keyword, HHS Agency and/or type. New tools are being added regularly. The links below will take you to Data.gov where you can access the data set, rate it, and view additional details.

Proper citation: HHS.gov/Open: Tools (RRID:SCR_004342) Copy   

•   Source: SciCrunch Registry
  

http://www.wikidoc.org//index.php/WikiPatient

WikiPatient is the independent patient information & news source that anyone can edit. With 71,700 Textbook Chapters and News Articles in English, this wiki is all about Care, Community, and Co-Creation. Major sections include WikiPatient: Patient Resources, WikiPatient News: Today in Medicine, Diseases/Disease States and Care Centers. WikiPatient is available in other languages including Español, Français, Polski, Русский, Română, 中文, and Türkçe.

Proper citation: WikiPatient (RRID:SCR_004343) Copy   

•   Source: SciCrunch Registry