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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GENEPI.JAR Resource Report Resource Website |
GENEPI.JAR (RRID:SCR_008782) | GENEPI.JAR | software application, software resource | A set of Java programs for genetic epidemiology analysis (entry from Genetic Analysis Software) | gene, genetic, genomic, java, web-based | is listed by: Genetic Analysis Software | nlx_154336 | http://bioinformatics.med.utah.edu/~alun/software/index.html | SCR_008782 | JPSGCS | 2026-09-05 06:32:40 | 0 | |||||||
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HAPLOVISUAL Resource Report Resource Website |
HAPLOVISUAL (RRID:SCR_009073) | HAPLOVISUAL | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154068 | SCR_009073 | 2026-09-05 06:32:43 | 0 | |||||||||
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FAMHAP Resource Report Resource Website 10+ mentions |
FAMHAP (RRID:SCR_009070) | FAMHAP | software application, software resource | Software application for haplotype association analysis of unphased genotype data. It can be used both for population data (case-control) and nuclear family data. The program is optimized for haplotype frequency estimation with the EM-algorithm for many markers. FAMHAP provides a method which searches for potential genotyping errors and several tests for haplotype-based association analysis. Particular emphasis is on Monte-Carlo simulations, which are necessary in the context of haplotype association, where asymptotic theory often fails, and in the context of multiple testing problems. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, ms-windows, macos | is listed by: Genetic Analysis Software | nlx_154064 | SCR_009070 | 2026-09-05 06:32:43 | 12 | |||||||||
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BAMA Resource Report Resource Website 50+ mentions |
BAMA (RRID:SCR_009071) | BAMA | software application, software resource | Software application to select a trait-associated subset of markers among many candidates. The program is based on Bayesian modeling/estimation and it suits for both quantitative and qualitative traits. It can handle bi- and multiallelic markers as well as applied in situations where part of the marker genotypes may be missing. As an output of the program, one obtains posterior estimate of number and positions of trait-associated markers. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, c, linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154065 | SCR_009071 | Bayesian Analysis of Multilocus Association | 2026-09-05 06:32:42 | 98 | |||||||
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SNPHARVESTER Resource Report Resource Website 1+ mentions |
SNPHARVESTER (RRID:SCR_008536) | SNPHARVESTER | software application, software resource | Software tool for detecting epistatic interactions in genome-wide association studies (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154643 | SCR_008536 | 2026-09-05 06:32:40 | 6 | |||||||||
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BDGEN Resource Report Resource Website 1+ mentions |
BDGEN (RRID:SCR_008811) | BDGEN | software application, software resource | Powerful database software with improvement tools for paternity testing, database searching (like CODIS) and NRC II recommendations based formulae for investigating likelyhood ratios in putative contributors to crime evidences. Additional genetic population parameters estimations are added in this version. Only spanish version available. (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows | is listed by: Genetic Analysis Software | nlx_154237 | SCR_008811 | 2026-09-05 06:32:41 | 1 | |||||||||
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HELIXTREE Resource Report Resource Website 10+ mentions |
HELIXTREE (RRID:SCR_009067) | HELIXTREE | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. | gene, genetic, genomic, c++, ms-windows, linux, macos x | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154059 | http://www.goldenhelix.com/SNP_Variation/HelixTree | SCR_009067 | HelixTree Genetic Association Software | 2026-09-05 06:32:42 | 24 | ||||||
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SVCC Resource Report Resource Website 1+ mentions |
SVCC (RRID:SCR_009068) | SVCC | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. | gene, genetic, genomic, linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154060 | http://www.bios.unc.edu/~lin/software/SVCC/ | SCR_009068 | Semiparametric Variance-Component for Censored data | 2026-09-05 06:32:42 | 3 | ||||||
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GENECLASS Resource Report Resource Website 50+ mentions |
GENECLASS (RRID:SCR_009065) | GENECLASS | software application, software resource | Software application employing multilocus genotypes to select or exclude populations as origins of individuals (Assignment and Migrants Detection). (entry from Genetic Analysis Software) | gene, genetic, genomic, delphi, ms-windos, unix | is listed by: Genetic Analysis Software | nlx_154053 | SCR_009065 | 2026-09-05 06:32:42 | 88 | |||||||||
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CHIP2SPELL Resource Report Resource Website 1+ mentions |
CHIP2SPELL (RRID:SCR_009060) | CHIP2SPELL | software application, software resource | Software application that aims to speed up the preparation of linkage data files passed on to the Alohomora software for data from the Affymetrix or Illumina assays. Chip2Spell gathers the information necessary to supplement the genotype data (such as the genetic map of the markers and the population-specific allele frequencies) from publicly available annoation files from Affymetrix and Illumina. The program formats the genotype data for input into the Alohomora program. (entry from Genetic Analysis Software) | gene, genetic, genomic, perl, linux, ms-windows | is listed by: Genetic Analysis Software | nlx_154045 | SCR_009060 | 2026-09-05 06:32:42 | 1 | |||||||||
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Vietnam Era Twin Registry Biospecimen Repository Resource Report Resource Website |
Vietnam Era Twin Registry Biospecimen Repository (RRID:SCR_008808) | VET Registry Biospecimen Repository | biomaterial supply resource, material resource | The Vietnam Era Twin (VET) Registry maintains a repository of biological specimens obtained from Registry members. The VET Registry Biospecimen Repository includes DNA, plasma, and serum samples obtained from selected VET Registry members. As the VET Registry is a national resource for studies investigating genetic and non-genetic influences on health and disease in middle age men, this enhances the value of the information collected from VET Registry members to the research community. The VET Registry has developed a general system of protocols for the collection and storage of biological specimens that assures confidentiality for all participants. The biological specimens currently in use are stored at the R&D Core Laboratory at the VA Puget Sound Health Care System (VAPSHCS) in Seattle, WA. The R&D Core Laboratory performs DNA extraction procedures and separates out DNA, plasma, and serum for testing and storage. It is important to note that Core Laboratory staff has absolutely no phenotypic (non-genetic) information about VET Registry members, as the lab is completely blinded to the identity, disease characteristics, and any other research data collected from VET Registry members. The Massachusetts Veterans Epidemiology Research and Information Center (MAVERIC) Core Laboratory is located at the VA Boston Health Care System in Boston, MA, and serves as the long-term storage site for the VET Registry Biospecimen Repository. Before a VET Registry member decides whether to participate in the Biospecimen Repository, the procedures, confidentiality safeguards, and potential risks are explained in great detail. To be able to accommodate the wishes of members, a so-called layered consent process is used which allows members to choose from several options with regard to how their biological specimen will be used in current or future research studies. Such options may include: 1) not having their samples used for any testing beyond the immediate goals of the study; 2) allowing for future testing of their samples restricted to the study for which they provided the sample; or 3) allowing unrestricted future research use of their samples. Members are informed that any future use of their samples would have to be approved by the VET Registry, in addition to an independent ethics committee that protects the rights and welfare of research subjects, this board is more commonly known as an Institutional Review Board or IRB. Confidentiality safeguards include assigning code numbers, as opposed to name or other personal information, on all biological specimens. Zygosity Testing The accuracy of DNA testing makes it the best method for determining zygosity, identical (monozygotic) versus fraternal (non-identical or dizygotic), in VET Registry twin members. The use of DNA for zygosity testing is only performed when both members of a twin pair agree to the testing. Other Genetic Testing for specific genes will not necessarily involve providing the participants with test results. | twin, male, adult, dna, plasma, serum, gene, genetic, health, disease, vietnam veteran |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Vietnam Era Twin Registry |
Vietnam Era Twin Registry member (Vietnam War and Twin), Aging | Collaborators (members of the cohort)?: As the VET Registry is a national resource for studies investigating genetic and non-genetic influences on health and disease in middle age men, This enhances the value of the information collected from VET Registry members to the research community. | nlx_144390 | SCR_008808 | 2026-09-05 06:32:41 | 0 | |||||||
|
EASYPOP Resource Report Resource Website 10+ mentions |
EASYPOP (RRID:SCR_008961) | EASYPOP | software application, software resource | Software application allowing to simulate population genetics datasets. It allows generating genetic data for haploid, diploid, and haplodiploid organisms under a variety of mating systems. It includes various migration and mutation models. Output can be generated for the FSTAT, GENEPOP, and ARLEQUIN genetic analysis packages. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-windows, (95/98/nt/2000/xp), macos, (x) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154012 | http://www.unil.ch/dee/page36926_fr.html | SCR_008961 | 2026-09-05 06:32:41 | 16 | |||||||
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CARTHAGENE Resource Report Resource Website 10+ mentions |
CARTHAGENE (RRID:SCR_009013) | CARTHAGENE | software application, software resource | A genetic/radiation hybrid mapping software that looks for multiple populations maximum likelihood consensus maps using a fast EM algorithm for maximum likelihood estimation and powerful ordering algorithms inspired from TSP (Traveling Salesman Problem) technology. It can handle large data sets made up of different populations (either F2 backcross, recombinant inbred lines, F2 intercross, phase known outbreds, haploid/diploid radiation hybrids). It can also exploit existing syntenic relationships between the organism mapped and a reference (sequenced) organism for accurate dense RH mapping. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, tcl/tk, ms-windows, unix, solaris, linux, sources are available for other operating systems (gpl/qpl). | is listed by: Genetic Analysis Software | nlx_154008 | SCR_009013 | 2026-09-05 06:32:41 | 42 | |||||||||
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SNP-HWE Resource Report Resource Website 1+ mentions |
SNP-HWE (RRID:SCR_008555) | SNP-HWE | software application, software resource | Software application for a fast exact Hardy-Weinberg Equilibrium test for SNPs (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, c, c++, r | is listed by: Genetic Analysis Software | nlx_154645 | SCR_008555 | 2026-09-05 06:32:40 | 4 | |||||||||
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PEDPEEL Resource Report Resource Website |
PEDPEEL (RRID:SCR_008436) | PEDPEEL | software application, software resource | Software program that prepares pedigree data for calculation of Elston-Stewarts'' likelihood function. It finds an optimal way to peel a pedigree and returns text file containing 7 description arrays (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154524, biotools:pedpeel | https://bio.tools/pedpeel | SCR_008436 | 2026-09-05 06:32:40 | 0 | ||||||||
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GENOME Resource Report Resource Website 50+ mentions |
GENOME (RRID:SCR_008949) | GENOME | software application, software resource | Software application to simulate sequences drawn from a population under the Wright-Fisher neutral model. The purpose of this program is to simulate sequences on the whole genome scale within practical time. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, solaris, linux, ms-windows | is listed by: Genetic Analysis Software | nlx_154347 | SCR_008949 | 2026-09-05 06:32:41 | 63 | |||||||||
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FASTMAP (1) Resource Report Resource Website |
FASTMAP (1) (RRID:SCR_008346) | FASTMAP (1) | software application, software resource, software toolkit | Fluorescent allele-calling software toolkit: a computer software for fully automated microsatellite genotyping. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, macos, matlab, programming environment is required. | is listed by: Genetic Analysis Software | nlx_154310 | SCR_008346 | Fluorescent Allele-calling Software Toolkit: Microsatellite Automation Package | 2026-09-05 06:32:40 | 0 | ||||||||
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TAGSNP Resource Report Resource Website 50+ mentions |
TAGSNP (RRID:SCR_008623) | TAGSNP | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran90 | is listed by: Genetic Analysis Software | nlx_154671 | SCR_008623 | 2026-09-05 06:32:40 | 71 | |||||||||
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2DMAP Resource Report Resource Website |
2DMAP (RRID:SCR_009036) | 2DMAP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application for constructing 2-d crossover-based map. | gene, genetic, genomic, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154001 | SCR_009036 | 2026-09-05 06:32:41 | 0 | ||||||||
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ADMIXMAP Resource Report Resource Website 10+ mentions |
ADMIXMAP (RRID:SCR_009035) | ADMIXMAP | software application, software resource | General-purpose program for modelling admixture, using marker genotypes and trait data on a sample of individuals from an admixed population (such as African-Americans), where the markers have been chosen to have extreme differentials in allele frequencies between two or more of the ancestral populations between which admixture has occurred. The main difference between ADMIXMAP and classical programs for estimation of admixture such as ADMIX is that ADMIXMAP is based on a multilevel model for the distribution of individual admixture in the population and the stochastic variation of ancestry on hybrid chromosomes. This makes it possible to model the associations of ancestry between linked marker loci, and the association of a trait with individual admixture or with ancestry at a linked marker locus. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, linux, ms-windows, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:admixmap, nlx_153999 | https://bio.tools/admixmap | SCR_009035 | Admixture mapping | 2026-09-05 06:32:41 | 20 |
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