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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Matrix2png
 
Resource Report
Resource Website
100+ mentions
Matrix2png (RRID:SCR_010669) software resource An open visualization tool for the display of matrix data. It is available for download or interactive web use. It is a simple but powerful program for making visualizations of microarray data and many other data types. It generates PNG formatted images from text files of data. It is fast, easy to use, and reasonably flexible. It can be used to generate publication-quality images, or to act as a image generator for web applications. Our group has found it useful for imaging all kinds of matrix-based data, not just microarray data. dna microarray, matrix has parent organization: University of British Columbia; British Columbia; Canada nlx_74565 SCR_010669 2026-08-29 11:23:34 127
Boyce Thompson Institute for Plant Research
 
Resource Report
Resource Website
Boyce Thompson Institute for Plant Research (RRID:SCR_010716) BTI data or information resource, portal, topical portal BTI is unique in being a private, not-for-profit research institute dedicated to plant biology, and located on a major university campus. Its mission is to advance and communicate scientific knowledge in plant biology to improve agriculture, protect the environment, and enhance human health. The institute was founded in Yonkers, New York, next to the home of its benefactor, William Boyce Thompson. In the mid-1970''s, however, it was recognized that a physical presence on a university campus would catapult the institute to a higher level of research, and the Cornell affiliation was born. BTI hires its own faculty, postdoctoral scholars and technicians, but also hosts undergraduate and graduate researchers from Cornell. BTI faculty generally have adjunct appointments at Cornell, and participate in graduate training and other university affairs. As envisioned in the Agreement of Affiliation, the partnership is advantageous for both parties, and contributes to a singularly strong environment for fundamental plant research on the campus. William Boyce Thompson founded BTI in 1924 on the premise that basic plant research leads to real benefits for people. Many potential applications of BTI research are to improve crops by increasing yield or nutritional content, or decreasing the need for harmful fertilizers and pesticides. Other research could lead to inexpensive plant-made vaccines, or even shed light on the human immune system. With aims like these in mind, scientists at BTI study life at the scale of genes and proteins to learn about processes such as how plants detect light, or how they respond when aphids bite into them. Along with research, BTI''s mission includes environmental responsibility and outreach to teachers, students, and community members. Though it remains an independent, non-profit institution, BTI is affiliated with Cornell University and is located on its Ithaca, New York campus. has parent organization: Cornell University; New York; USA
is parent organization of: SGN
is parent organization of: Sol Genomics Network - Bulk download
nlx_89613 SCR_010716 Boyce Thompson Institute 2026-08-29 11:23:51 0
CiteXplore literature searching
 
Resource Report
Resource Website
1+ mentions
CiteXplore literature searching (RRID:SCR_010676) data access protocol, data or information resource, database, software resource, web service CiteXplore combines literature search with text mining tools for biology. Search results are cross referenced to EBI applications based on publication identifiers. Links to full text versions are provided where available. The underlying database is populated with data from Medline, Patents, C.B.A. and Citeseer. The site offers a quick search as well as an advanced search. Results of queries can be saved in formats compatible with commonly-used bibliographic management software and exported. We provide a Simple Object Access Protocol (SOAP) based service to retrieve data from the Citation database. Text mining is provided internally by Whatizit and externally by iHOP. gold standard has parent organization: European Bioinformatics Institute nlx_76807 SCR_010676 CiteXplore 2026-08-29 11:23:34 8
Barth Syndrome Foundation
 
Resource Report
Resource Website
1+ mentions
Barth Syndrome Foundation (RRID:SCR_010556) BSF institution The Barth Syndrome Foundation, together with our affiliates, is a community of families, physicians, scientists, donors and volunteers around the world. As our mission statement says, we are dedicated to saving lives through education, advances in treatment, and finding a cure for Barth syndrome - a sometimes fatal, oftentimes debilitating genetic disease. Our work includes: * Raising awareness among physicians, scientists, and the general public; * Supporting relevant research through an international grant research program; * Providing a caring and educational community for affected families; and * Hosting a unique information resource. Working together we are making a difference in the lives of children and their families. One day there will be a cure; we hope you will help us make that day come sooner. We are the only world-wide volunteer organization dedicated to saving lives through education, advances in treatment and pursuit of a cure for Barth syndrome (BTHS). We started in 2000, after the first international conference held in Baltimore, MD (USA) where families from around the world met to discuss BTHS. As a result, we made a unanimous decision to work together to find a cure for this multi-system disorder. Our Foundation strives to accelerate progress through collaboration between families and scientists. We encourage family participation in research. Also, we provide several ways to keep up-to-date about advances in science and medicine. Our principal education event is our biennial international scientific, medical and family conference, which brings together the largest number of individuals interested in Barth syndrome. Our Family Services team is continually developing new informational resources in response to the needs of families, individuals, and professionals working with those affected by Barth syndrome. is parent organization of: Barth Syndrome Biorepository Crossref funder ID: 100002651, nlx_35906, grid.427791.e https://ror.org/00p5z3m34 SCR_010556 2026-08-29 11:23:48 1
PSI-MI
 
Resource Report
Resource Website
1+ mentions
PSI-MI (RRID:SCR_010710) MI data or information resource, narrative resource, standard specification The Proteomics Standards Initiative (PSI) aims to define community standards for data representation in proteomics to facilitate data comparison, exchange and verification. As a first step, the PSI is developing standards for two key areas of proteomics: mass spectrometry and protein-protein interaction data. The document describes the molecular interaction data exchange format. PSI is following a leveled approach to building this specification. Level 1 will describe protein interactions at a basic level that covers a large amount of currently available data. Subsequent levels will add capability to represent new molecular interaction information that the community wishes to exchange. The scope of PSI MI is currently limited to protein-protein interactions. Other molecules, such as small molecules, DNA and RNA maybe taken into account in the future. The PSI MI format is a data exchange format for protein-protein interactions. It is not a proposed database structure. The purpose of the document is to describe the general structure of the PSI MI XML specification in a more user-friendly manner than the specification does itself. PSI MI was designed by a group of people including representatives from database providers and users in both academia and industry. PSI MI is supported by the DIP, MINT, IntAct, BIND and HPRD databases. is used by: MINT
is related to: DOMINO: Domain peptide interactions
is related to: PathGuide: the pathway resource list
is related to: VirusMINT
is related to: MatrixDB
is related to: cPath
is related to: IMEx - The International Molecular Exchange Consortium
is related to: IntAct
is related to: Biological General Repository for Interaction Datasets (BioGRID)
nlx_87297 SCR_010710 PSI MI, PSI, Proteomic Standard Initiative for Molecular Interaction, Proteomics Standards Initiative, Proteomics Standards Initiative Molecular Interaction XML Format Documentation 2026-08-29 11:23:51 2
NIH Blueprint NHP Atlas
 
Resource Report
Resource Website
10+ mentions
NIH Blueprint NHP Atlas (RRID:SCR_010559) NHP Atlas atlas, data or information resource, database, expression atlas, reference atlas Atlas of gene expression in the developing rhesus macaque brain. This atlas is a free online resource with a unique set of data and tools aimed to create a developmental neuroanatomical framework for exploring the cellular and molecular architecture of the developing postnatal primate brain with direct relevance for human brain development. The atlas includes: * Microarray ** Microdissection: Fine structure transcriptional profiling across postnatal development for fine nuclear subdivisions of the prefrontal cortex, primary visual cortex, hippocampus, amygdala and ventral striatum ** Macrodissection: Gross structure transcriptional profiling across postnatal development for the same structures * ISH: ** Cellular resolution in situ hybridization image data of five major brain regions during postnatal developmental periods for genes clinically important for a variety of human neurodevelopmental disorders, including prefrontal cortex, primary visual cortex, hippocampus, amygdala and ventral striatum. ** Serial analysis of selected genes across the entire adult brain, focusing on cellular marker genes, genes with cortical area specificity and gene families important to neural function. * ISH Anatomic Search: Detailed gene expression search on the ISH data based on expert annotation * Reference Data: Developmental stage-specific reference series, consisting of magnetic resonance imaging (MRI) and Nissl histology to provide a neuroanatomical context for the gene expression data. These data and tools are designed to provide a valuable public resource for researchers and educators to explore neurodevelopment in non-human primates, and a key evolutionary link between other Web-based gene expression atlases for adult and developing mouse and human brain. molecular neuroanatomy resource, developing brain, development, brain, gene expression, postnatal, mrna transcript, in situ hybridization, prefrontal cortex, primary visual cortex, hippocampus, amygdala, ventral striatum, dna microarray, magnetic resonance imaging, nissl, histology, brain development, developmental stage, microdissection, macrodissection, microarray, cell density, neuroanatomy, non-human primate is related to: Allen Human Brain Atlas: BrainSpan (Atlas of the Developing Brain)
has parent organization: Allen Institute for Brain Science
Neurodevelopmental disorder NIH Blueprint for Neuroscience Research ;
NIMH contract HHSN-271-2008-0047
Free nlx_37895 SCR_010559 NIH Blueprint Non-Human Primate Atlas 2026-08-29 11:23:44 27
NTNU Systems Biology
 
Resource Report
Resource Website
NTNU Systems Biology (RRID:SCR_010713) NTNU SB data or information resource, portal, postdoctoral program resource, topical portal, training resource The new NTNU Systems Biology website showcases the different systems biology efforts at NTNU. Regular updates on new initiatives and advertisements for new PhD and Postdoc vacancies in systems biology will be posted. has parent organization: Norwegian University of Science and Technology; Trondheim; Norway nlx_88017 http://www.ntnu.edu/nt/systemsbiology SCR_010713 Systems Biology - NTNU 2026-08-29 11:23:45 0
AlloSource
 
Resource Report
Resource Website
1+ mentions
AlloSource (RRID:SCR_010683) AlloSource nonprofit organization AlloSource is a non-profit organization founded in 1994 on a promise to honor and respect the gift of donation by responsibly developing, processing and distributing life-saving and life-enhancing allografts for our communities. Today, each of our 300 employees continues to fulfill this promise through multi-shift, 360-day processing to the highest quality and service standards. We strive to be the tissue network patients and the world''s most respected transplant teams ask for by name. This is accomplished by understanding the needs of our doctors and by providing the best tissue for our recipients. We offer more than 200 standard and customized precision allograft products, and act as a trusted and knowledgeable partner to the medical community, all with the intention of maximizing medical impact. In 1995, Allosource evolved from a local tissue bank in Denver, Colorado into a national organization serving communities around the country. Today, AlloSource is one of the largest, most respected tissue banks in the United States. Through our growth we''ve remained committed to the wishes of donor families, the needs of our surgeon customers, and the hopes of our patient recipients. Our promise of doing more with life reflects our unwavering focus on integrity, quality, safety, and respect today, and into the future. is listed by: One Mind Biospecimen Bank Listing Crossref funder ID: 100007821, ISNI: 0000 0004 0444 4813, grid.468397.7, nlx_79067 https://ror.org/04x2e7745 SCR_010683 AlloSource 2026-08-29 11:23:34 3
Manhattan HIV Brain Bank
 
Resource Report
Resource Website
1+ mentions
Manhattan HIV Brain Bank (RRID:SCR_010520) MHBB biomaterial supply resource, brain bank, material resource, tissue bank Biorepository of tissues and fluids relevant for the neurologic, neuropsychologic, psychiatric and neuropathologic manifestations of HIV infection, linked to medical records and an on-going clinical trial for research use by the scientific community. The MHBB conducts a longitudinal, observational study that follows a group of HIV-infected individuals who have agreed to be fluid and organ donors for the purposes of AIDS research. They are currently the largest, multidisciplinary neuroAIDS cohort in New York City, the epicenter of the US HIV epidemic. Research participants undergo regular neurologic, neuropsychologic, and psychiatric evaluations, and provide body fluid samples that are linked to clinical information. Upon their demise, study participants become organ donors. This program has supplied clinical information, tissue, and fluid samples to over 70 qualified AIDS researchers across America, Europe and Australia. In fulfilling its resource mission, the MHBB functions as part of the National NeuroAIDS Tissue Consortium (NNTC). MHBB provides a means by which people living with HIV can be engaged in the struggle to improve our knowledge about HIV infection and the damage it causes to the body. human immunodeficiency virus, aids, body fluid, organ, clinical information, tissue, brain, liver disease, liver disorder, aids pathogenesis, clinical data is listed by: One Mind Biospecimen Bank Listing
is related to: One Mind Biospecimen Bank Listing
is related to: National NeuroAIDS Tissue Consortium
has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA
Human immunodeficiency virus, AIDS, Liver disease, Liver disorder NIH nlx_19658 http://www.mountsinai.org/Research/Centers%20Laboratories%20and%20Programs/Manhattan%20HIV%20Brain%20Bank SCR_010520 2026-08-29 11:23:32 1
Brain Observatory
 
Resource Report
Resource Website
Brain Observatory (RRID:SCR_010641) Brain Observatory biospecimen repository, data or information resource, material storage repository, portal, service resource, storage service resource, topical portal, video resource Formerly a topical portal studying the brain which collected and imaged 1000 human brains, the Brain Observatory has partnered with the Institute for Brain and Society to build virtual laboratories that will feed directly into the database of images and knowledge created in the context of the Human Brain Library. The Brain Observatory will also host exhibits, conferences, and events aimed at promoting a heightened awareness of brain research and how its results can benefit personal brain fitness and mental health. human, brain, visual cortex, neuroimaging has parent organization: University of California San Diego School of Medicine; California; USA Human immunodeficiency virus, NeuroAIDS, AIDS, Amnesia NIMH ;
NSF ;
The Dana Foundation ;
NEI
Public nlx_69083 http://thebrainobservatory.ucsd.edu/ SCR_010641 The Brain Observatory 2026-08-29 11:23:34 0
Jackson ImmunoResearch
 
Resource Report
Resource Website
1000+ mentions
Jackson ImmunoResearch (RRID:SCR_010488) commercial organization A commercial antibody vendor, specializing in secondary antibodies. nlx_157891 SCR_010488 Jackson Immuno Research, Jacksonimmunoresearch 2026-08-29 11:23:43 3972
PRABI
 
Resource Report
Resource Website
50+ mentions
PRABI (RRID:SCR_010522) PRABI data or information resource, organization portal, portal, service resource, training resource The PRABI is the Rhone-Alpes Bioinformatics Center, a IBISA platform member of the RENABI (the French network of bioinformatic platforms). It gathers 11 research teams spread on 4 different sites. The PRABI has research, service and training activities in a large number of bioinformatics and biostatistics fields. is parent organization of: ProDom
is parent organization of: PrabiG
is parent organization of: ROSO
CNRS ;
INRIA ;
Claude Bernard University Lyon 1; Lyon; France ;
INRA ;
Region Rhone-Alpes
nlx_20320 SCR_010522 Rhone-Alpes Bioinformatics Center 2026-08-29 11:23:48 50
Biomaker Commons
 
Resource Report
Resource Website
Biomaker Commons (RRID:SCR_010645) data or information resource, database, narrative resource, portal, topical portal Biomarker Commons aggregates news and research on disease biomarkers, and includes links to biomarker journals, resources and commercial services. There are a number of biomarkers in use today, not only in experimental research but in the clinical setting. * Translation biomarkers are used in both a preclinical (i.e. animal models) and clinical setting * Early detection biomarkers are used to identify the earliest stages of disease onset * Diagnostic biomarkers are used to identify the presence or absence of a specific disease state * Staging biomarkers are used to distinguish between different stages of a chronic disorder * Prognostic biomarkers are used to determine patient survival probability * Disease biomarkers are related to a clinical outcome or measure of disease * Predictive or efficacy biomarkers are used to predict the efficacy of a specific drug therapy * Target biomarkers are used to determine the interaction of a drug or small molecule with its target * Mechanism biomarkers are used to report on the downstream effects of a drug * Toxicity biomarkers are used to determine the toxicological effects of drugs on an in vitro or in vivo system * Surrogate biomarkers are regarded as valid substitutes for measuring clinical outcomes Users may search biomarker news (search by tags, news archive. or insights), sign up for biomarker news email alerts, follow biomarker commons and view biomarker news top tags biomarker, biomarkers in cancer, biomarkers in central nervous system, biomarkers in metabolic disease, biomarkers in autoimmune disease, biomarkers in computational biology nlx_65765 SCR_010645 2026-08-29 11:23:44 0
TraIT
 
Resource Report
Resource Website
10+ mentions
TraIT (RRID:SCR_010493) software resource An ambitious project to develop an IT infrastructure for translational research that aims to facilitate the collection, storage, analysis, archiving, sharing and securing of data. is related to: eTRIKS nlx_158039 SCR_010493 Translational Research IT, TraIT project 2026-08-29 11:23:47 23
EMIF
 
Resource Report
Resource Website
50+ mentions
EMIF (RRID:SCR_010495) EMIF consortium, data or information resource, organization portal, portal A project that aims to improve access to human health data by developing a common information framework (EMIF-Platform) that allows for efficient re-use of existing health data, opening up new avenues of research for scientists. To ensure immediate applicability, the project includes two specific therapeutic research topics: the onset of Alzheimer's Disease (EMIF-AD) and metabolic complications of obesity (EMIF-Metabolics). The AD Topic aims to discover and validate biomarkers of AD onset in the preclinical and prodromal phase as well as for disease progression and identify high-risk individuals for therapeutic trials for prevention. The Metabolic Topic aims to discover and evaluate biomarkers for the risk of metabolic complications in obesity and to identify high-risk populations for intervention purposes. Collaboration between the 3 topics will ensure the development and delivery of an efficient Information Framework. This initiative has combined several data sets for neuroimaging including ADNI and several others, curating them into transmart. metabolic complication, biomarker, tool development, data sharing, health data, preclinical, prodromal, interoperability, adult human, pediatric, young human, cell model, animal model, therapeutic target, trial design, high-risk population, metabolic, health, platform, prevention, clinical trial, disease progression is related to: eTRIKS
is related to: Roche
is related to: Janssen Research and Development
is related to: Pfizer Animal Genetics
is related to: Brighton Collaboration
is related to: Ealing Hospital; London; United Kingdom
is related to: EuroRec
is related to: European Molecular Biology Laboratory
is related to: PENTA-ID
is related to: University of Gothenburg; Gothenburg; Sweden
is related to: University of Helsinki; Helsinki; Finland
is related to: National Institute of Health and Medical Research; Rennes; France
is related to: University of Eastern Finland; Eastern Finland; Finland
is related to: Karolinska Institute; Stockholm; Sweden
is related to: King's College London; London; United Kingdom
is related to: Maastricht University; Maastricht; Netherlands
is related to: Max-Planck-Gesellschaft
is related to: University of Tartu; Tartu; Estonia
is related to: VTT Technical Research Centre of Finland
is related to: University of Aveiro; Aveiro; Portugal
is related to: University of Pisa; Pisa; Italy
is related to: University of Leipzig; Saxony; Germany
is related to: Pompeu Fabra University; Barcelona; Spain
is related to: University of Antwerp; Antwerp; Belgium
is related to: University College London; London; United Kingdom
is related to: University of Cambridge; Cambridge; United Kingdom
is related to: University of Copenhagen; Copenhagen; Denmark
is related to: University of Glasgow; Glasgow; United Kingdom
is related to: University of Leicester; Leicester; United Kingdom
is related to: University Hospital Erlangen; Bavaria; Germany
is related to: University of Manchester; Manchester; United Kingdom
is related to: Sorbonne University; Paris; France
is related to: VIB; Flanders; Belgium
is related to: Alzheimer Europe
is related to: Cambridge Cognition
is related to: concentris research management
is related to: Custodix
is related to: Genomedics
is related to: PHARMO Institute
is related to: Synapse Research Management Partners
is related to: Proteome Sciences
is related to: Pedianet
is related to: Gnubila
is related to: Medical Research Council
is related to: Vestische Children and Youth Clinic Dates; North Rhine-Westphalia; Germany
has parent organization: University of Oxford; Oxford; United Kingdom
EFPIA ;
Innovative Medicines Initiative 115372
nlx_158040 SCR_010495 European Medical Information Framework 2026-08-29 11:23:43 52
ContextMap
 
Resource Report
Resource Website
10+ mentions
ContextMap (RRID:SCR_010496) ContextMap software resource A context-based approach to identify the most likely mapping for RNA-seq experiments. is listed by: OMICtools OMICS_01239 SCR_010496 2026-08-29 11:23:32 28
Alkermes
 
Resource Report
Resource Website
Alkermes (RRID:SCR_010497) ALKS commercial organization A biopharmaceutical company that focuses on central nervous system (CNS) diseases. The company is the result of a merger between Alkermes, Inc. and Elan Drug Technologies (EDT), the former drug formulation and manufacturing division of Elan Corporation, plc. The company is headquartered in Dublin, and has an R&D center in Waltham, Massachusetts and manufacturing facilities in Athlone, Ireland; Gainesville, Georgia; and Wilmington, Ohio. Alkermes has more than 20 commercial drug products and candidates that address serious and chronic diseases such as addiction, schizophrenia, diabetes and depression. Among these, five products are primary to the company: risperidone Long-Acting Injection (Risperdal Consta) for schizophrenia and bipolar 1 disorder, paliperidone palmitate (Invega Sustenna in the U.S., Xeplion in Europe) for schizophrenia, 4-aminopyridine (Ampyra in the U.S., Fampyra in Europe) to improve walking in patients with multiple sclerosis, naltrexone for extended-release injectable suspension (Vivitrol) for alcohol and opioid dependence, and exenatide extended-release for injectable suspension (Bydureon) for the treatment of type 2 diabetes. Bydureon is a once-weekly, long-acting form of the drug exenatide (Byetta) and was developed through a partnership between Amylin, Alkermes and Eli Lilly. It is approved in Europe and the U.S. (Wikipedia) central nervous system, disease, biopharmaceutical company, drug Central nervous system disease, Addiction, Schizophrenia, Diabetes, Depressive Disorder, Bipolar Disorder, Multiple Sclerosis, Alcohol dependence, Opioid dependence, Type 1 diabetes, Type 2 diabetes ISNI: 0000 0004 0384 2510, nlx_158068, Wikidata: Q4727688, grid.472773.2 https://ror.org/05sa44m96 SCR_010497 Alkermes plc 2026-08-29 11:23:47 0
CRAC
 
Resource Report
Resource Website
10+ mentions
CRAC (RRID:SCR_010652) CRAC software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Integrated RNA-Seq read analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. is listed by: OMICtools
is listed by: Debian
DOI:10.1186/s12920-016-0178-5 THIS RESOURCE IS NO LONGER IN SERVICE OMICS_01240 https://sources.debian.org/src/crac/ SCR_010652 2026-08-29 11:23:44 16
Creighton University School of Pharmacy and Health Professions
 
Resource Report
Resource Website
Creighton University School of Pharmacy and Health Professions (RRID:SCR_010541) university If Occupational Therapy, Pharmacy, or Physical Therapy is not just a career choice for you - if it''s a calling - then you may belong at Creighton University. For our students, it''s about more than career training. It''s about serving patients. Restoring health. Changing lives. Health care is a serious career, perhaps a lifelong calling. Creighton seeks the cream of the crop for these programs - men and women who feel a genuine calling to serve patients, restore health, and save lives. There''s more for you in Omaha than a vibrant university community. It''s true that U.S. News & World Report lists us as among the best colleges in the Midwest. And that we''ve been educating health professionals for more than a century. We''re also home to one of the world''s leading medical communities. That means training in leading edge facilities and in one of the nation''s best teaching hospitals. Perhaps our greatest distinction, however, is our university-wide commitment to creating an ever better and more just world. You''ll find our PT doctoral students staffing a free clinic for the underserved our pharmacy students conducting drug and alcohol education seminars ... and our OT students volunteering for the Special Olympics. It''s all tied to the values we strive toward as a Jesuit institution. has parent organization: Creighton University; Nebraska; USA nlx_26778 http://spahp2.creighton.edu/ SCR_010541 SPAHP 2026-08-29 11:23:43 0
Community Pilot Funding Opportunity
 
Resource Report
Resource Website
10+ mentions
Community Pilot Funding Opportunity (RRID:SCR_010506) funding resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 15, 2017.

Funding opportunities provided by projects or organizations other than government funding opportunities such as those from NIH or NSF.
THIS RESOURCE IS NO LONGER IN SERVICE nlx_158616 SCR_010506 2026-08-29 11:23:43 20

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