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http://www.brown.edu/Research/Istrail_Lab/hapcompass.php

Software that utilizes a fast cycle basis algorithm for the accurate haplotype assembly of sequence data. It is able to create pairwise SNP phasings.

Proper citation: HapCompass (RRID:SCR_000942) Copy   

•   Source: SciCrunch Registry

http://sysbio.harvard.edu/csb/

A group dedicated to combining a variety of experimental and theoretical approaches to find general principles that explain the structure, behavior and evolution of cells and organisms. The center hosts a variety of fellows and faculty from various backgrounds such as biology, physics, chemistry, mathematics, computer science and engineering.

Proper citation: FAS Center For Systems Biology (RRID:SCR_000789) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/cbinifti/

An I/O library for Matlab/Octave Matlab and Octave library for reading and writing Nifti-1 files. cbiNifti is intended to be a small, self-contained library that makes minimal assumptions about what Nifti files should look like and allow users easy access to the raw data. cbiNifti handles compressed file formats for reading and writing, using Unix pipes for compression and decompression. More information and code examples at: http://www.pc.rhul.ac.uk/staff/J.Larsson/software.html

Proper citation: cbiNifti: Matlab/Octave Nifti library (RRID:SCR_000860) Copy   

•   Source: SciCrunch Registry

http://web.ncku.edu.tw/bin/home.php?Lang=en

National Cheng Kung University is a research-led comprehensive university in Tainan, Taiwan that has undergraduate, master's, and doctoral degree programs. This university has fields of: science, engineering, medicine, management, planning and design.

Proper citation: National Cheng Kung University; Tainan; Taiwan (RRID:SCR_000980) Copy   

•   Source: SciCrunch Registry

http://www.montana.edu/

Montana State University is a university institute has programs for undergraduate, master's and doctoral degrees. There are 54 master's degree options, 37 doctoral degree options including one specialist program, and 14 certificate options.

Proper citation: Montana State University (RRID:SCR_000979) Copy   

•   Source: SciCrunch Registry

http://www.iimcb.gov.pl/

International Institute of Molecular and Cell Biology creates partnerships with research centers within and outside Poland. This organization provides a base of administration, management of finances and resources, sharing space and equipment, grant writing and grant management procedures, etc. They organize workshops, training courses, conferences and other scientific events for researchers of various specialties and nationalities. Additionally, this organization commercializes results to provide biotechnological solutions with regards to the global economy and global research services deals.

Proper citation: International Institute of Molecular and Cell Biology; Warsaw; Poland (RRID:SCR_000971) Copy   

•   Source: SciCrunch Registry

http://www.efsa.europa.eu/

A government granting agency which consults with partnered programs through national authorities and food safety agencies. EFSA organizes its annual and multi-annual work program according to priorities agreed with the European Commission and other partners, taking into account available resources. EFSA staff may also produce scientific outputs on behalf of the agency, such as peer reviews of the assessment of active substances in pesticides, or responses to urgent requests for advice. EFSA staff also monitor and analyze information and data on biological hazards, chemical contaminants, food consumption and emerging risks.

Proper citation: European Food Safety Authority (RRID:SCR_000963) Copy   

•   Source: SciCrunch Registry

http://www.icmr.nic.in/

A government-funded council for the promotion and coordination of biomedical research in India. The council focuses on specific diseases such as HIV/AIDS, tuberculosis, and leprosy in addition to national health priorities including the management of communicable diseases, fertility control, and mental health research.

Proper citation: Indian Council of Medical Research; New Delhi; India (RRID:SCR_000968) Copy   

•   Source: SciCrunch Registry

http://www.princeton.edu/

A private Ivy League research university based in New Jersey that confers undergraduate and graduate degrees in the humanities, social sciences, natural sciences, and engineering. It offers professional degrees in international affairs, engineering and applied science, architecture, and finance

Proper citation: Princeton University; New Jersey; USA (RRID:SCR_001059) Copy   

•   Source: SciCrunch Registry

https://github.com/Ensembl/WiggleTools

A multithreaded software library that computes statistics on large numbers of datasets, generating statistical summaries within minutes with limited memory requirements, whether on the whole genome or on selected regions.

Proper citation: WiggleTools (RRID:SCR_001170) Copy   

•   Source: SciCrunch Registry

https://github.com/akiomiyao/tif

A search program to detect insertions of transposable element from short reads of next generation sequencer.

Proper citation: Transposon Insertion Finder (RRID:SCR_001159) Copy   

•   Source: SciCrunch Registry

http://www.ndsu.edu/

Public research university in North Dakota, USA. It is a land-grant university that focuses on agriculture and the applied sciences. In addition, it offers undergraduate and graduate degrees in a wide variety of areas including engineering, science and mathematics, health professions, business, and agriculture and food systems studies.

Proper citation: North Dakota State University; North Dakota; USA (RRID:SCR_001110) Copy   

•   Source: SciCrunch Registry

http://www.ou.edu/

A coeducational public research university located in Oklahoma, USA. The institution confers undergraduate and graduate degrees in fields such as law, medicine, aviation, energy management, history of science, and Native American studies.

Proper citation: University of Oklahoma; Oklahoma; USA (RRID:SCR_001074) Copy   

•   Source: SciCrunch Registry

http://www.adelaide.edu.au/

Public research university in Adelaide, South Australia. It is known for its focus on research and emphasis on moving towards commercialization of research.

Proper citation: University of Adelaide; Adelaide; Australia (RRID:SCR_001075) Copy   

•   Source: SciCrunch Registry

https://www.athensresearch.com/

Commercial supplier of bioproducts for studies of inflammation, autoimmune disease, cancer, coronary disease, Alzheimer's Disease and more. These include antibodies, enzymes, coagulation factors, and assay kits.

Proper citation: Athens Research and Technology (RRID:SCR_001079) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/2.13/bioc/html/bsseq.html

R package with tools for analyzing and visualizing bisulfite sequencing data.

Proper citation: bsseq (RRID:SCR_001072) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/release/bioc/html/MmPalateMiRNA.html

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Software R package written for analysis of murine palate miRNA two-color expression data.

Proper citation: MmPalateMiRNA (RRID:SCR_001070) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/2.10/bioc/html/R453Plus1Toolbox.html

R software toolbox of functions for the analysis of data generated by Roche's 454 sequencing platform. Additional functions are included for quality assurance, annotation and visualization of detected variants, complementing the software tools shipped by Roche with their product. A pipeline for the detection of structural variants is provided.

Proper citation: R453Plus1Toolbox (RRID:SCR_001105) Copy   

•   Source: SciCrunch Registry

http://bioinformatics.mdanderson.org/main/BreakFusion

Software package written in Perl and C++ that provides a computational pipeline for identifying gene fusions from RNA-seq data.

Proper citation: BreakFusion (RRID:SCR_001102) Copy   

•   Source: SciCrunch Registry

http://www.ed.gov/

The United States federal government Department of Education, which oversees policies on federal financial aid for education, collecting data and disseminating research, and working to promote key educational discussions and equal access to education.

Proper citation: U.S. Department of Education (RRID:SCR_001060) Copy   

•   Source: SciCrunch Registry