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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Database of Open Chromatin Regions Resource Report Resource Website 1+ mentions |
Database of Open Chromatin Regions (RRID:SCR_016614) | data or information resource, database | Collection of open chromatin regions from sequencing data. Metadata as entire curated DNase-I hypersensitive sites (DHS) on the whole genome datasets and data specific to each chromosome. | collection, open, chromatin, region, sequencing, data, metadata, dataset | Free, Available for download, Freely available | SCR_016614 | 2026-08-29 11:30:22 | 3 | |||||||||||
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Database of genes related to Repeat Expansion Diseases Resource Report Resource Website 1+ mentions |
Database of genes related to Repeat Expansion Diseases (RRID:SCR_018086) | DRED | data or information resource, database, service resource | Database of genes related to Repeat Expansion Diseases, as comprehensive manually curated database that covers all reported repeat expansion diseases included in PubMed and OMIM. Detailed information about each repeat and its related genes/diseases can be found in database, links to OMIM, NCBI and Ensembl are also provided. Provides list of predicted genes containing unstable tandem repeats that may cause diseases via abnormal repeat expansion by support vector machine and random forest. | Gene, repeat expansion disease, unstable tandem repeat, abnormal repeat expansion, data |
works with: OMIM works with: NCBI works with: Ensembl |
Repeat Expansion Diseases | Free, Freely available | SCR_018086 | Database of genes related to Repeat Expansion Diseases | 2026-08-29 11:30:26 | 1 | |||||||
|
mqtldb Resource Report Resource Website 10+ mentions |
mqtldb (RRID:SCR_018002) | mqtldb | data or information resource, database | Data collection of large scale genome wide DNA methylation analysis of 1,000 mother-child pairs at serial time points across life course (ARIES). | Data, large scale, genome, DNA methylation, analysis, mother-child pair, serial time point, life course, aeries, methylation, quantitative trait loci, database | DOI:10.1186/s13059-016-0926-z | SCR_018002 | methylation quantitative trait loci database | 2026-08-29 11:30:46 | 47 | |||||||||
|
PostgreSQL Resource Report Resource Website 100+ mentions |
PostgreSQL (RRID:SCR_021067) | data or information resource, database | Open source object relational database system that uses and extends SQL language combined with many features that safely store and scale the most complicated data workloads. PostgreSQL runs on all major operating systems. | Object relational database system, SQL language, data storage, data, database system |
uses: pgAdmin is listed by: SoftCite has parent organization: University of California at Berkeley; Berkeley; USA |
Free, Available for download, Freely available | SCR_021067 | Postgres | 2026-08-29 11:30:35 | 166 | |||||||||
|
Scopus Resource Report Resource Website 500+ mentions |
Scopus (RRID:SCR_022559) | data or information resource, database | Abstract and indexing database with full text links that is produced by Elsevier Co. Combines expertly curated abstract and citation database with enriched data and linked scholarly literature across wide variety of disciplines. | Elsevier Co, abstract and citation database, data, scholarly literature, abstract and indexing database, full text links | is listed by: SoftCite | PMID:16522216 | SCR_022559 | 2026-08-29 11:30:31 | 788 | ||||||||||
|
ClinWiki Resource Report Resource Website 1+ mentions |
ClinWiki (RRID:SCR_021297) | data or information resource, database | Clinical trials database. | Clinical trials, data, Wikidata | is related to: Wikidata | William Hoos | Free, Freely available | Wikidata_Q96777166 | https://www.wikidata.org/wiki/Q96777166 | SCR_021297 | 2026-08-29 11:30:29 | 1 | |||||||
|
trinetx Resource Report Resource Website 100+ mentions |
trinetx (RRID:SCR_022760) | data or information resource, database | Network of healthcare organizations, together with data partners in Brazil, South Korea, and Japan, to bring clinical facts on more than 250 million patients around the world. Federated model so users of this data are ensured new patients, observations, and results every day, all harmonized to standard terminology like ICD-10 and LOINC without any data wrangling required at the point of care. The raw data is not available to authors of papers and papers in medicine are being retracted. | Data, medical data, clinical facts, patients around the world, raw data is not available to authors, papers in medicine are being retracted | Restricted | SCR_022760 | 2026-08-29 11:30:31 | 295 | |||||||||||
|
CLC Main Workbench Resource Report Resource Website 10+ mentions |
CLC Main Workbench (RRID:SCR_000354) | CLC Main Workbench | software resource, software toolkit | A suite of software for DNA, RNA and protein sequence data analysis. The software allows for the analysis and visualization of Sanger sequencing data as well as gene expression analysis, molecular cloning, primer design, phylogenetic analyses, and sequence data management. | sequencing, analysis, cloning, data, management, molecular, gene, genome, dna, rna |
is listed by: OMICtools is listed by: SoftCite |
Restricted | OMICS_01813 | SCR_000354 | 2026-08-29 11:30:37 | 31 | ||||||||
|
Cross Validation Resource Report Resource Website |
Cross Validation (RRID:SCR_000702) | service resource, training service resource | A model evaluation method for training someone to read data. There are three methods: the holdout method, K-fold cross validation, and leave-one-out cross validation. | model, modeling, training, data, holdout, k fold, cross, validation | has parent organization: Carnegie Mellon University; Pennsylvania; USA | nlx_19901 | SCR_000702 | 2026-08-29 11:30:50 | 0 | ||||||||||
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DSigDB Resource Report Resource Website 100+ mentions |
DSigDB (RRID:SCR_026202) | data or information resource, database | Online database provides collection of gene sets based on quantitative inhibition and/or drug-induced gene expression changes data of drugs and compounds. Allows users to search, view and download drugs/compounds and gene sets. | gene sets, quantitative inhibition, drug induced, gene expression changes, data, drugs, compounds, | NCI P30CA046934; NCI P50CA058187 |
PMID:25990557 | Free, Freely available, | SCR_026202 | , Drug Signatures Database, drug SIGnatures DataBase | 2026-08-29 11:34:22 | 165 | ||||||||
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Washington University School of Medicine Knight ADRC Request Center Resources Core Facility Resource Report Resource Website 1+ mentions |
Washington University School of Medicine Knight ADRC Request Center Resources Core Facility (RRID:SCR_025254) | access service resource, core facility, service resource | Provides on request resources including Data: clinical and cognitive measures as well as MRI and amyloid imaging scans; Tissue: frozen brain tissue, paraffin brain sections, antemortem CSF, DNA, fibroblast, dermal fibroblasts, plasma (fasting and non-fasting) and iPSC; Participants: eligible participants may be invited to enroll in research of other investigators after appropriate review. Researchers can use the request portal to review Center guidelines and policies; view available data and tissue; access data tables and codebooks; and submit request for resources. | ABRF, Alzheimer research, Data, OASIS, Biospecimen, tissue, imaging, |
is listed by: ABRF CoreMarketplace has parent organization: Washington University School of Medicine Knight Alzheimers Disease Research Center has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA |
Alzheimer disease, dementia | NIA P01AG003991; NIA P01AG026276; NIA P30AG066444; NIA U19 AG0032438 |
ABRF_2734 | https://coremarketplace.org/?FacilityID=2734&citation=1 | SCR_025254 | ADRC Request Center Resources | 2026-08-29 11:33:49 | 4 | ||||||
|
OAI Knowledge base Resource Report Resource Website 50+ mentions |
OAI Knowledge base (RRID:SCR_028107) | data or information resource, knowledge base | Centralized, annotated repository for the Osteoarthritis Initiative (OAI) study, designed to accelerate research by organizing and linking extensive clinical, imaging (MRI/X-ray), and biomarker data. It aims to help researchers analyze knee osteoarthritis prevention, treatment, and progression. | DRKB, clinical, imaging, MRI, X-ray, biomarker, data, osteoarthritis | Free, Freely available, | SCR_028107 | Osteoarthritis Initiative Knowledge base | 2026-08-29 11:35:21 | 50 | ||||||||||
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Human Brain Variation Project Resource Report Resource Website 1+ mentions |
Human Brain Variation Project (RRID:SCR_028065) | data access protocol, data or information resource, portal, project portal, software resource, web service | Project provides data currently generated with support from the NIH Brain Initiative Cell Atlas Network (BICAN). Broad Institute collaboration supported by the NIH BRAIN Initiative, to create comprehensive atlas of cellular variation in the healthy human brain. It maps data from millions of cells across diverse individuals to understand how brain biology differs, helping researchers distinguish healthy variation from disease states. | Brain, data, healthy human brain, cells, |
is related to: BRAIN Initiative Cell Atlas Network is related to: BRAIN Initiative |
Free, Freely available | SCR_028065 | Human Brain Variation Project (McCarroll, Macosko) | 2026-08-29 11:35:35 | 1 | |||||||||
|
Concept Hub Resource Report Resource Website |
Concept Hub (RRID:SCR_013586) | data or information resource, portal, topical portal | THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 18, 2016. A database built up with software and services that maintains multiple versions of terminologies, map sets, and values sets concurrently. HDD Access has superseded Concept Hub. | collaboration, concept, consumer, data, developer, health care, terminology | is related to: HDD Access | THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 18, 2016. | SCR_013586 | ConceptHub | 2026-08-29 11:35:09 | 0 | |||||||||
|
Brigham and Women’s Hospital NeuroTechnology Studio Core Facility Resource Report Resource Website |
Brigham and Women’s Hospital NeuroTechnology Studio Core Facility (RRID:SCR_027687) | access service resource, core facility, service resource | Offers advanced instrumentation and expert support to advance understanding of brain function and brain disease by providing researchers with access to cutting-edge technologies. Provides access to advanced instrumentation for optical microscopy, genomics, metabolic imaging and other technologies, as well as image analysis software. Provides expert support and training, data quality and interpretation. | ABRF, optical microscopy, genomics, metabolics, imaging, training, data, neuroscience, image analysis, |
is listed by: ABRF CoreMarketplace has parent organization: Harvard Medical School; Massachusetts; USA |
Restricted | ABRF_5659 | https://coremarketplace.org/RRID:SCR_027687/?citation=1 | SCR_027687 | 2026-08-29 11:35:11 | 0 | ||||||||
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BIDMC Division of Digital Psychiatry LAMP platform Core Facility Resource Report Resource Website 1+ mentions |
BIDMC Division of Digital Psychiatry LAMP platform Core Facility (RRID:SCR_027767) | access service resource, core facility, data or information resource, service resource | Core collects data to capture and consider the real-time lived experiences of patients. Uses open-source digital platform and mobile app for neuropsychiatric research and clinical care, to monitor, support, and improve brain health by collecting real-time data (like location, activity, heart rate via sensors), conducting digital assessments (surveys, cognitive tests), and delivering interventions (meditation, journaling, psychoeducation) to patients and clinicians. It helps study behavioral patterns, track symptoms, and personalize mental health treatment through features organized around Learn, Assess, Manage, and Prevent. | ABRF, study behavioral patterns, track symptoms, personalize mental health treatment, data, neuropsychiatric research and clinical care management platform, run remote smartphone-based research studies, |
is listed by: ABRF CoreMarketplace has parent organization: Harvard Medical School; Massachusetts; USA |
ABRF_3107 | https://coremarketplace.org/?FacilityID=3107, https://docs.lamp.digital/, https://github.com/BIDMCDigitalPsychiatry/LAMP-platform/ | SCR_027767 | mindLAMP, BIDMC mindLAMP, Beth Israel Deaconess Medical Center mindLAMP | 2026-08-29 11:35:37 | 2 | ||||||||
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Collection of Alternative Methods for Regulatory Application (CAMERA) Resource Report Resource Website 1+ mentions |
Collection of Alternative Methods for Regulatory Application (CAMERA) (RRID:SCR_027893) | CAMERA | data or information resource, database | Interactive database and user interface providing online access to validated alternative methods for U.S. regulatory and other contexts of use. Central hub and unified resource of validated alternative methods that enhances accessibility to validation study reports, data, protocols / SOPs, and information on regulatory guidance.Users can filter searches by alternative method types, defined approaches, Test Method Endpoint, and regulatory guidance. | NAMSD, validated alternative methods, U.S. regulatory, validation study reports, data, protocols, SOPs, regulatory guidance, | Free, Freely available | SCR_027893 | Collection of Alternative Methods for Regulatory Application | 2026-08-29 11:35:38 | 1 | |||||||||
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MarmotGraph Resource Report Resource Website |
MarmotGraph (RRID:SCR_027452) | knowledge graph, software application, software resource | Knowledge graph system developed for managing and organizing rich metadata objects, initially for the Human Brain Project (HBP) and now extended to be a more generic, domain-agnostic solution. It is associated with CSCS (Swiss National Supercomputing Centre) and aims to provide a comprehensive toolset and API for working with knowledge graphs. | Metadata, managing, system, neuroscience, experimental, data, human, brain, graph, database, terminology, ontology | is related to: EBRAINS Knowledge Graph | Free, Freely available, | SCR_027452 | Management Applications for Rich Metadata ObjecTs Graph | 2026-08-29 11:35:22 | 0 | |||||||||
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UK Data Service Resource Report Resource Website |
UK Data Service (RRID:SCR_028844) | UKDS | data or information resource, data repository, service resource, storage service resource | Principal repository for economic, population, and social research data in the UK. As hosts of the largest trusted digital archive of its kind, our expertise in the collection, preservation, and dissemination of quality data is the culmination of nearly sixty years of sustained investment by the Economic and Social Research Council (ESRC) in the UK’s research data infrastructure. | Social Sciences, UK, Data, Humanities, Economics | ESRC | Free, Freely available | https://doi.org/10.17616/R3230F, https://ror.org/0468x4e75, https://isni.org/isni/0000000494504700, https://doi.org/10.25504/FAIRsharing.1ky0cs | SCR_028844 | 2026-08-29 11:35:50 | 0 | ||||||||
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Genomedata Resource Report Resource Website 1+ mentions |
Genomedata (RRID:SCR_004544) | Genomedata | software resource, source code | A format for efficient storage of multiple tracks of numeric data anchored to a genome. The format allows fast random access to hundreds of gigabytes of data, while retaining a small disk space footprint. They have also developed utilities to load data into this format. Retrieving data from this format is more than 2900 times faster than a naive approach using wiggle files. A reference implementation in Python and C components is available here under the GNU General Public License. The software has only been tested on Linux and Mac systems. | genome, data, format, linux, mac, functional genomics, function, bio.tools |
is listed by: OMICtools is listed by: 3DVC is listed by: bio.tools is listed by: Debian has parent organization: University of Washington; Seattle; USA |
PMID:20435580 | GNU General Public License | nlx_53677, biotools:genomedata, OMICS_02148 | https://bio.tools/genomedata | SCR_004544 | 2026-08-29 11:31:59 | 1 |
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