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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Assessment Serial Evaluation and Subsequent Sequelae in Acute Kidney Injury (ASSESS-AKI) Resource Report Resource Website |
Assessment Serial Evaluation and Subsequent Sequelae in Acute Kidney Injury (ASSESS-AKI) (RRID:SCR_014386) | ASSESS-AKI | data or information resource, data set, resource | A study which recruits patients with and without an episode of acute kidney injury during a hospitalization, and follows them longitudinally for major cardiac, renal and mortality events. An important aspect of the study is the prospective evaluation of potential biomarkers for renal and cardiac outcomes. | study, acute kidney injury, longitudinal, major cardiac event, major renal event, major mortality event, biomarker |
is listed by: NIDDK Research Resources is listed by: NIDDK Information Network (dkNET) |
NIDDK | Account required | http://www.niddk.nih.gov/research-funding/research-resources/Pages/default.aspx | SCR_014386 | Assessment Serial Evaluation and Subsequent Sequelae in Acute Kidney Injury | 2026-09-03 04:59:47 | 0 | ||||||
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UCSF Liver Center Resource Report Resource Website 1+ mentions |
UCSF Liver Center (RRID:SCR_015595) | data or information resource, organization portal, portal | Center whose goal is to integrate bench science with clinical investigation, in support of its vision to understand and cure human liver diseases. | UCSF, liver, liver disease |
is listed by: NIDDK Information Network (dkNET) is parent organization of: UCSF Liver Center Cell Biology Core is parent organization of: UCSF Liver Center Clinical & Translational Core is parent organization of: UCSF Liver Center Immunology Core is parent organization of: UCSF Liver Center Pathology & Imaging Core has organization facet: UCSF Liver Center Cell Biology Core has organization facet: UCSF Liver Center Clinical & Translational Core has organization facet: UCSF Liver Center Immunology Core has organization facet: UCSF Liver Center Pathology & Imaging Core is organization facet of: Digestive Disease Centers |
liver disease | NIDDK P30 DK026743 | Available to the research community | SCR_015595 | 2026-09-03 05:00:26 | 2 | ||||||||
|
Vitamin D to Prevent Type 2 Diabetes (D2d) Resource Report Resource Website 1+ mentions |
Vitamin D to Prevent Type 2 Diabetes (D2d) (RRID:SCR_014382) | D2d | data or information resource, data set, resource | A study to determine whether vitamin D supplementation is safe and effective in delaying the onset of type 2 diabetes in people at risk for the disease and to gain a better understanding of how vitamin D affects glucose metabolism. | diabetes, vitamin d, supplement, prevention, glucose metabolism |
is listed by: NIDDK Research Resources is listed by: NIDDK Information Network (dkNET) |
Type 2 diabetes | NIDDK | Study is ongoing | http://www.niddk.nih.gov/research-funding/research-resources/Pages/default.aspx | SCR_014382 | Vitamin D to Prevent Type 2 Diabetes | 2026-09-03 04:59:54 | 1 | |||||
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University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Cell Culture Core Resource Report Resource Website |
University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Cell Culture Core (RRID:SCR_015621) | biomaterial supply resource, cell repository, material resource | Core facility that maintains a centralized repository of cells and reagents pertinent to digestive, liver and pancreatic disease research. It also provides training for labs in new cell culture (2D and 3D) techniques. | digestive disease, liver disease, pancreatic disease, cell repository, reagent, cell culture |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases is organization facet of: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases |
digestive disease, liver disease, pancreatic disease | NIDDK P30 DK050306 | Available to the research community | SCR_015621 | 2026-09-03 04:59:57 | 0 | ||||||||
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UCSF Liver Center Cell Biology Core Resource Report Resource Website |
UCSF Liver Center Cell Biology Core (RRID:SCR_015600) | biomaterial supply resource, cell repository, material resource | Core whose purpose is providing primary and immortalized liver cells for experimental use as well as other material such as human liver cells, primary hepatocytes, and immortalized cell lines. | cell biology, cell lines, liver cells, hypatocyte |
is listed by: NIDDK Information Network (dkNET) has parent organization: UCSF Liver Center is organization facet of: UCSF Liver Center |
liver disease | NIDDK P30 DK026743 | Available to the research community | SCR_015600 | 2026-09-03 05:00:12 | 0 | ||||||||
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University of Chicago Digestive Diseases Research Core Center Integrated Translational Research Core Resource Report Resource Website |
University of Chicago Digestive Diseases Research Core Center Integrated Translational Research Core (RRID:SCR_015606) | biomaterial supply resource, cell repository, material resource | Core that serves as both a central repository for all the samples and data shared by the other cores and a catalyst for interdisciplinary research. | integrated translational research, communication, digestive disease research |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Chicago Digestive Diseases Research Core Center is organization facet of: University of Chicago Digestive Diseases Research Core Center |
digestive disease | NIDDK P30 DK042086 | Available to the research community | SCR_015606 | 2026-09-03 04:59:50 | 0 | ||||||||
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AccuCor Resource Report Resource Website 10+ mentions |
AccuCor (RRID:SCR_023046) | data processing software, software application, software resource | Software as isotope natural abundance correction algorithm that is needed especially for high resolution mass spectrometers. Natural abundance correction of mass spectrometer data. | Natural abundance correction, mass spectrometer data, isotope natural abundance correction algorithm, high resolution mass spectrometers | NCI CA211437; NCI R01 CA163591; NIDDK P30DK019525; U. S. Department of Energy |
PMID:28471646 | Free, Available for download, Freely available | https://github.com/XiaoyangSu/AccuCor | SCR_023046 | 2026-09-03 05:01:16 | 27 | ||||||||
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Secrepedia Resource Report Resource Website |
Secrepedia (RRID:SCR_022590) | data or information resource, database, portal, project portal | Encyclopedia of white and brown adipocyte secretome in mouse models and humans as key prerequisite to elucidating role of these mediators in normal physiology and disease. | Encyclopedia, white and brown adipocyte secretome, mouse models and humans, normal physiology and disease | is listed by: NIDDK Information Network (dkNET) | type 2 diabetes, Diabetes, obesity | NIDDK | Free, Freely available | SCR_022590 | 2026-09-03 05:00:32 | 0 | ||||||||
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SCDE Resource Report Resource Website 10+ mentions |
SCDE (RRID:SCR_015952) | data analysis software, data processing software, sequence analysis software, software application, software resource | Software package that implements a set of statistical methods for analyzing single-cell RNA-seq data, including differential expression analysis (Kharchenko et al.) and pathway and geneset overdispersion analysis (Fan et al.) | statistic, single, cell, rna, seq, rnaseq, differential, analysis, pathway, gene, geneset, dispersion, overdispersion, bayesian, expression, magnitude | Leukemia and Lymphoma Research UK ; Leukemia and Lymphoma Society ; NHLBI R01 HL097794; NIA K25 AG037596; NIDDK R01 DK050234 |
PMID:24836921 | Free, Available for download | SCR_015952 | 2026-09-03 04:58:07 | 32 | |||||||||
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APA-Scan Resource Report Resource Website |
APA-Scan (RRID:SCR_022974) | data analysis software, data processing software, data visualization software, software application, software resource | Software Python tool for detection and visualization of annotated and potential alternative polyadenylation events in downstream 3'-UTR of gene among two different biological conditions. Used for detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data. | annotated and potential alternative polyadenylation events, gene downstream 3'-UTR, RNA-seq and 3'-end-seq data, two different biological conditions, polyadenylation events | NIDDK DK097771; NIGMS R01GM113952; NSF FET2003749 |
PMID:36171568 | Free, Available for download, Freely available | SCR_022974 | 2026-09-03 04:58:44 | 0 | |||||||||
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GeneRanger Resource Report Resource Website |
GeneRanger (RRID:SCR_023622) | data access protocol, software resource, web service | Web server application that provides access to processed data about expression of human genes and proteins across human cell types, tissues, and cell lines from several atlases. Used to explore single gene expression across tissues and cell types. | explore single gene expression, gene expression across tissues and cell types, gene expression, |
is related to: TargetRanger has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NCI U24CA224260; NCI U24CA264250; NCI U24CA271114; NIDDK R01DK131525; NIDDK RC2DK131995; NIH Office of the Director OT2OD030160 |
PMID:37166966 | Free, Freely available | SCR_023622 | 2026-09-03 04:59:19 | 0 | ||||||||
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TargetRanger Resource Report Resource Website 1+ mentions |
TargetRanger (RRID:SCR_023621) | data access protocol, software resource, web service | Web server application that identifies targets from user inputted RNA-seq samples collected from cells we wish to target. By comparing inputted samples with processed RNA-seq and proteomics data from several atlases, TargetRanger identifies genes that are highly expressed in target cells while lowly expressed across normal human cell types, tissues, and cell lines. | identify targets, identify genes, user inputted RNA-seq samples, target cells, proteomics data, human cells, |
is related to: GeneRanger has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NCI U24CA224260; NCI U24CA264250; NCI U24CA271114; NIDDK R01DK131525; NIDDK RC2DK131995; NIH Office of the Director OT2OD030160 |
PMID:37166966 | Free, Freely available | https://maayanlab.github.io/Workshop.io/generanger | SCR_023621 | 2026-09-03 04:59:39 | 2 | |||||||
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MediBeacon: Transdermal GFR Monitor Resource Report Resource Website 1+ mentions |
MediBeacon: Transdermal GFR Monitor (RRID:SCR_024533) | instrument resource | Transdermal Glomerular Filtration Rate monitor used to assess renal function in mouse and rat models of acute kidney injury and chronic kidney disease. | Transdermal, Glomerular Filtration Rate, monitor, assess renal function, mouse, rat, acute kidney injury, chronic kidney disease, | DOD PR161028; NIDDK R01DK112688; Vanderbilt Center for Kidney Disease |
PMID:30394397 | Restricted | SCR_024533 | 2026-09-03 04:59:23 | 1 | |||||||||
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SpheroScan Resource Report Resource Website 1+ mentions |
SpheroScan (RRID:SCR_023886) | data processing software, image analysis software, software application, software resource | Software tool for analyzing images of spheroids. Designed to streamline process of spheroid segmentation, area calculation, and downstream analysis of spheroid image data, and can help to standardize and accelerate analysis of spheroid assay results. | 3D spheroids, spheroids image, spheroid segmentation, spheroid image data, | Else Kröner-Fresenius-Stiftung ; NIDDK R01 DK077195; NIDDK R01 DK127673; Swiss National Science Foundation ; Wings for Life Spinal Cord Research Foundation |
Free, Available for download, Freely available | SCR_023886 | 2026-09-03 05:00:14 | 1 | ||||||||||
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Metabox Resource Report Resource Website 1+ mentions |
Metabox (RRID:SCR_024443) | software resource, software toolkit | Software R toolbox for thorough metabolomic data analysis, integration and interpretation. Metabox 2.0 is updated version of R package Metabox and includes several methods for data processing, statistical analysis, biomarker analysis, integrative analysis and data interpretation. | Metabolomics, metabolomic analysis, data integration, data interpretation, | NIDDK U24 DK097154 | PMID:28141874 | Free, Available for download, Freely available | https://github.com/kwanjeeraw/mETABOX, https://metsysbio.com/metabox/index.html, http://kwanjeeraw.github.io/metabox/, https://github.com/kwanjeeraw/metabox2, | SCR_024443 | metabox2, Metabox 2.0, metabox | 2026-09-03 05:01:02 | 7 | |||||||
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Childhood Liver Disease Research and Education Network Resource Report Resource Website 1+ mentions |
Childhood Liver Disease Research and Education Network (RRID:SCR_001497) | ChiLDREN | biomaterial supply resource, material resource, tissue bank | Database of clinical information and serum and tissue samples from children across the United States and Canada with Biliary Atresia, Idiopathic Neonatal Hepatitis, Cystic Fibrosis Liver Disease, Alagille Syndrome, Alpha-1 Antitrypsin Deficiency, Bile Acid Synthesis Defects, Mitochondrial Hepatopathies, and Progressive Familial Intrahepatic Cholestasis in order to facilitate research and to perform clinical, epidemiological, and therapeutic trials in these important pediatric liver diseases. Three NIDDK-funded consortia, Biliary Atresia Research Consortium (BARC), Cholestatic Liver Disease Consortium (CLiC), and the Cystic Fibrosis Liver Disease (CFLD) Network were consolidated to form ChiLDREN. Most of the ChiLDREN studies are natural history studies aimed at acquiring information and data that will provide a better understanding of these rare conditions. Participants will be asked to allow study personnel to obtain information from medical records and an interview, and to collect blood, urine, and tissue samples when clinically indicated, in order to understand the causes of these diseases and to improve the diagnosis and treatment of children with these diseases. All of the information obtained in these studies is confidential and no names or identifying information are used in the study. | child, clinical, epidemiology, therapy, pediatric, young human, rare disease, diagnostics, treatment, infant, liver, longitudinal, gall bladder, bile duct, small intestine, colon, lymph node, blood, urine, tissue, serum, plasma, dna, bile, liver tissue, gall bladder tissue, bile duct tissue, small intestine tissue, colon tissue, lymph node tissue |
is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Information Network (dkNET) has parent organization: University of Michigan; Ann Arbor; USA |
Biliary Atresia, Idiopathic Neonatal Hepatitis, Cystic Fibrosis Liver Disease, Alagille Syndrome, Alpha-1 Antitrypsin Deficiency, Bile Acid Synthesis Defect, Mitochondrial Hepatopathy, Progressive Familial Intrahepatic Cholestasis, Liver disease, Metabolism defect, Cholestasis | NIDDK 2U01DK062456 | nlx_152755 | SCR_001497 | Childhood Liver Disease Research and Education Network (ChiLDREN) | 2026-09-03 05:01:15 | 3 | ||||||
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MACS Resource Report Resource Website 1000+ mentions |
MACS (RRID:SCR_013291) | MACS | data analysis software, data processing software, software application, software resource | Software Python package for identifying transcript factor binding sites. Used to evaluate significance of enriched ChIP regions. Improves spatial resolution of binding sites through combining information of both sequencing tag position and orientation. Can be used for ChIP-Seq data alone, or with control sample with increase of specificity. | identify, transcript, factor, binding, site, model, based, analysis, CHIP Seq, short, read, sequencer, protein, DNA, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is listed by: SoftCite has parent organization: Dana-Farber Cancer Institute |
NHGRI HG004069; NHGRI HG004270; NIDDK DK074967 |
PMID:18798982 DOI:10.1186/gb-2008-9-9-r137 |
Free, Available for download, Freely available | OMICS_00446, biotools:macs | https://bio.tools/macs, https://sources.debian.org/src/macs/ | SCR_013291 | MACS - Model-based Analysis for ChIP-Seq, Model-based Analysis for ChIP-Seq, MACS2 | 2026-09-03 04:52:13 | 1418 | ||||
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Metabolomics Workbench Resource Report Resource Website 500+ mentions |
Metabolomics Workbench (RRID:SCR_013794) | MetWB | data or information resource, data repository, service resource, storage service resource | Repository for metabolomics data and metadata which provides analysis tools and access to various resources. NIH grantees may upload data and general users can search metabolomics database. Provides protocols for sample preparation and analysis, information about NIH Metabolomics Program, data sharing guidelines, funding opportunities, services offered by its Regional Comprehensive Metabolomics Resource Cores (RCMRC)s, and training workshops. | repository, metabolomics, database, funding, training, protocol, bio.tools, FASEB list, DRKB |
is used by: NIH Heal Project is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases lists: NIH Metabolomics program lists: MetaCore lists: JMP lists: STATISTICA lists: Spotfire lists: Coordination of Standards in Metabolomics lists: MetaboLights lists: MetabolomeXchange lists: Metabolomics Society lists: Birmingham Metabolite Library lists: Glycan Mass Spectral Database (GMDB) lists: Mass Spectral Library lists: mzCloud lists: MetabolomeExpress lists: Spectral Database System (SDBS) lists: CTSgetR lists: Hierarchical Clustering lists: imDEV lists: Linear Discriminant Analysis lists: Principal Components Analysis lists: mwtabR lists: 3Omics lists: ACD/ NMR Processor lists: NIST Mass Spectrometry Data Center lists: Chemical Translation Service lists: Chenomx NMR Suite lists: DeviumWeb lists: MBRole lists: MetaMapR lists: MetaP lists: Metscape lists: SIMCA lists: TeachingDemos is listed by: NIH Data Sharing Repositories is listed by: bio.tools is listed by: Debian is listed by: re3data.org is listed by: DataCite has parent organization: University of California; California; USA is parent organization of: Metabolomics Workbench Metabolite Database |
NIDDK DK141185; NIH |
Free, Freely available | biotools:Metabolomics_Workbench, r3d100012314 | https://bio.tools/Metabolomics_Workbench, https://api.datacite.org/dois?prefix=10.21228 | SCR_013794 | Metabolomics Workbench, MetWB, UCSD Metabolomics Workbench, Metabolomics Workbench (MetWB) | 2026-09-03 04:52:18 | 666 | |||||
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Nutrition and Obesity Research Centers Resource Report Resource Website 10+ mentions |
Nutrition and Obesity Research Centers (RRID:SCR_004131) | NORC | data or information resource, disease-related portal, organization portal, portal, resource, topical portal | Portal to research centers and core facilities specifically support obesity research and better understand the relationship between health and nutrition. | obesity core facility, obesity portal, obesity research center |
is listed by: NIDDK Information Network (dkNET) is listed by: Diabetes Research Centers is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Boston Nutrition and Obesity Research Centers has organization facet: Nutrition and Obesity Research Centers at Harvard has organization facet: Mid-Atlantic Nutrition Obesity Research Center has organization facet: New York Obesity Nutrition Research Center has organization facet: Pennington Biomedical Research Center Nutrition and Obesity Research Center has organization facet: University of Alabama at Birmingham Nutrition and Obesity Research Center has organization facet: University of California San Francisco Nutrition and Obesity Research Center has organization facet: University of Colorado Anschutz Medical Campus Nutrition and Obesity Research Center has organization facet: University of Michigan Nutrition and Obesity Research Center has organization facet: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center has organization facet: University of Washington Nutrition and Obesity Research Center has organization facet: Washington University St. Louis Nutrition Obesity Research Center |
Obesity, Nutrition-related disease, Eating disorder, Anorexia nervosa, AIDS, Cancer | NIDDK RFA-DK16-006 | Available to the research community | nlx_158684 | SCR_004131 | 2026-09-03 04:46:52 | 46 | ||||||
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Human Biological Data Interchange Resource Report Resource Website 100+ mentions |
Human Biological Data Interchange (RRID:SCR_004591) | HBDI | biospecimen repository, material storage repository, service resource, storage service resource | Database of medical history and genealogical data on over 6700 families who are affected by type 1 diabetes and a repository of DNA and immortalized cell lines collected from 500 families. This database and repository was originally created to help researchers uncover the genetic causes of type 1 diabetes but today, it is also used by researchers who study type 2 diabetes, diabetic complications, autoimmune diseases, kidney disease, and other disorders. The following resources and services are available to researchers through HBDI: * International Type 1 Diabetes Database: This database includes more than 6700 families with diabetes, related complications and other genetic diseases. There are extensive genealogical and medical histories for more than 90,000 individuals. NDRI conducts searches of the database for approved research requests. * HBDI Catalog: The catalog contains 503 family pedigrees with associated cell lines, DNA, and serum for research. Also available are HLA-typing and auto-antibody test results for diabetes families in the catalog. * HBDI Repository: The HBDI repository contains cell lines, DNA, and HLA typing information from 480 families, and frozen buffy coats from 23 families, all with Type 1 diabetes. They have recently expanded the repository to include specimens from individuals with rare diseases. * Customized Collections: NDRI will collect data from patients and physicians, conduct phone interviews and collect blood and other specimens for research on request., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | genetics, medical history, genealogical data, type 2 diabetes, diabetic complication, autoimmune disease, kidney disease, disorder, family pedigree, hla typing, frozen, buffy coat, catalog, demographic data, clinical data, autoantibody data, FASEB list |
is listed by: One Mind Biospecimen Bank Listing is related to: NIDDK Information Network (dkNET) has parent organization: National Disease Research Interchange |
Type 1 diabetes, Rare disease, Type 2 diabetes, Diabetic complication, Autoimmune disease, Kidney disease, Diabetes | NIDDK | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_143829 | SCR_004591 | Human Biological Data Interchange (HBDI) | 2026-09-03 04:47:22 | 107 |
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