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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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LPSN Database Resource Report Resource Website 100+ mentions |
LPSN Database (RRID:SCR_018151) | data or information resource, database, service resource | Database lists names of prokaryotes that have been validly published in International Journal of Systematic and Evolutionary Microbiology directly or by inclusion in Validation List, under Rules of International Code of Nomenclature of Bacteria. Has classification of prokaryotes and information on prokaryotic nomenclature and culture collections. | Collection, published Prokaryote name, International Journal of Systematic and Evolutionary Microbiology, prokaryotes classification, prokaryotes nomenclature, culture collection, data, FASEB list | DOI:10.1093/nar/gkt1111 | Free, Freely available | SCR_018151 | List of Prokaryotic names with Standing in Nomenclature Database | 2026-08-29 11:30:35 | 142 | |||||||||
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IST Online Resource Report Resource Website 10+ mentions |
IST Online (RRID:SCR_018794) | data or information resource, database, service resource | Database by Medisapiens Ltd. as fully integrated and annotated human gene expression data source. All genes are comparable across all samples. Provides data analysis options using database of human transcriptome. | Human gene, gene expression data, data, gene expression, gene, human transcriptome, Medisapiens Ltd. | Restricted | SCR_018794 | 2026-08-29 11:30:27 | 16 | |||||||||||
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Viral Integrated Structural Evolution Dynamic Database Resource Report Resource Website 1+ mentions |
Viral Integrated Structural Evolution Dynamic Database (RRID:SCR_018793) | VIStEDD | data or information resource, database | Database of SARS-CoV-2 and other viruses. Integrates structural and dynamic insights with viral evolution for proteins coded by virus. Each virus within database has workflow performed on each protein. Workflow consists of protein modeling, molecular dynamic simulations, evolutionary analysis, and mapping of protein-protein interactions. On page for each protein is link to individual protein data folder system, video of protein rotating with conservation, details of protein function, widget to purchase 3D print of protein at cost of production, amino acid movement from molecular dynamic simulations, and table of data for each amino acid of protein. | Virus, SARS-CoV-2, COVID-19, proteins coded by virus, viral evolution, protein, data, amino acid, protein modeling, molecular dynamic simulation, evolutionary analysis, protein-protein interaction, protein- protein interaction mapping, protein data folder system, rotating protein video, protein function, molecular dynamic simulation | has parent organization: Michigan State University; Michigan; USA | COVID-19 | NIEHS K01 ES025435; NIGMS R01 GM108618 |
PMID:32511397 | Free, Freely available | SCR_018793 | Viral Integrated Structural Evolution Dynamic Database, SARS-CoV-2 dynamicome database | 2026-08-29 11:30:47 | 3 | |||||
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C. elegans RNAi Collection (Ahringer) Resource Report Resource Website 10+ mentions |
C. elegans RNAi Collection (Ahringer) (RRID:SCR_017064) | data or information resource, database | C. elegans RNAi feeding library distributed by Source BioScience Ltd. Designed for genome wide study of gene function in C. elegans through loss of function studies. | Source BioScience Ltd, data, collection, bacterial, strain, Caenorhabditis elegans, RNA, interference, RNAi, gene, function, analysis, feeding, library | has parent organization: University of Cambridge; Cambridge; United Kingdom | Howard Hughes Medical Institute Predoctoral Fellow- ship ; Wellcome Trust Senior Research Fellowship |
PMID:12828945 | Available for purchase | SCR_017064 | 2026-08-29 11:30:46 | 16 | ||||||||
|
Finnish Twin Cohort Study Resource Report Resource Website 1+ mentions |
Finnish Twin Cohort Study (RRID:SCR_017477) | data or information resource, database | Twin panel consists of three nationwide samples of Finnish twin pairs. Major studies include nicotine dependence, eating disorders and brain imaging and alcohol use. | Twin, Finnish, nicotine, dependence, eating, disorder, brain, imaginig, alcohol, data, | has parent organization: University of Helsinki; Helsinki; Finland | Restricted | SCR_017477 | 2026-08-29 11:30:46 | 1 | ||||||||||
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Allen Brain Atlas expression map of Cre and other drivers Resource Report Resource Website 1+ mentions |
Allen Brain Atlas expression map of Cre and other drivers (RRID:SCR_017510) | atlas, data or information resource | Data detailing transgene expression in Cre and other driver lines for adult and developing brain. Experiments include colorimetric in situ hybridization, fluorescent in situ hybridization and other histological methods. Expression maps of transgenic Cre and other driver lines in mice. | Data, image, transgene, expression, Cre, brain, map, mice | has parent organization: Allen Brain Atlas | Free, Freely available | SCR_017510 | Allen Brain Atlas Data Portal Transgenic Characterization | 2026-08-29 11:30:34 | 9 | |||||||||
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OSHA Occupational Chemical Database Resource Report Resource Website 1+ mentions |
OSHA Occupational Chemical Database (RRID:SCR_018203) | data or information resource, database | Chemical inventory for occupational chemical information. Collects information from several government agencies and organizations. Includes information about identification and physical properties, exposure limits, sampling. | OSHA, occupational chemical data, chemical inventory, government, identification and physical property, exposure limit, sampling, chemical reagent, data | Free, Freely available | SCR_018203 | 2026-08-29 11:30:35 | 4 | |||||||||||
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Alberta Diabetes Institute IsletCore database Resource Report Resource Website 1+ mentions |
Alberta Diabetes Institute IsletCore database (RRID:SCR_018566) | data or information resource, database | Collection of data from all pancreatic islet isolations. | Pancreatic islet, data set, image collection, human islet isolation data, human pancreatic islet, data | is related to: University of Alberta; Alberta; Canada | diabetes | Restricted | SCR_018566 | 2026-08-29 11:30:47 | 5 | |||||||||
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VGNC Resource Report Resource Website 10+ mentions |
VGNC (RRID:SCR_017514) | data or information resource, database, service resource | Software resource for vertebrate gene nomenclature. Database of gene symbols. Coordinates with vertebrate nomenclature committees, MGNC (mouse), RGNC (rat), CGNC (chicken), AGNC (Anole green lizard), XNC (Xenopus frog) and ZNC (zebrafish), to ensure genes are named in line with their human homologs. | Vertebrate, gene, nomenclature, data, symbol | is related to: HGNC | NHGRI U24 HG003345; Wellcome Trust |
Free, Freely available | SCR_017514 | Vertebrate Gene Nomenclature Committee | 2026-08-29 11:30:25 | 14 | ||||||||
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Optogenetics Resource Center Resource Report Resource Website 1+ mentions |
Optogenetics Resource Center (RRID:SCR_017513) | data or information resource, database, service resource | Database of different optogenetics resources like hardware, protocols, sequence information. | Optogenetic, data | has parent organization: Stanford University; Stanford; California | Free, Freely available | SCR_017513 | 2026-08-29 11:30:25 | 2 | ||||||||||
|
RefLib Resource Report Resource Website |
RefLib (RRID:SCR_018320) | application programming interface, data access protocol, software resource | Reference library processing for JavaScript. Reference library processing for NodeJS. | Reference library processing, Java script, NodeJS, citation, citation record, data | Free, Available for download, Freely available | SCR_018320 | Reflib-Node | 2026-08-29 11:30:47 | 0 | ||||||||||
|
miRWalk Resource Report Resource Website 1000+ mentions |
miRWalk (RRID:SCR_016509) | data or information resource, database | Software tool to store the predicted and the experimentally validated microRNA (miRNA)-target interaction pairs. Predictions within the complete sequence of genes of human, mouse, and rat genomes. Integrates a comparative platform of miRNA-binding sites resulting from ten different prediction datasets. | microRNA, target, interaction, pair, binding, site, sequence, gene, data, FASEB list | is listed by: OMICtools | PMID:26226356 | Free, Available for download, Freely available | SCR_016509 | 2026-08-29 11:30:45 | 1741 | |||||||||
|
University of Arkansas at Little Rock MidSouth Bioinformatics Center Core Facility Resource Report Resource Website |
University of Arkansas at Little Rock MidSouth Bioinformatics Center Core Facility (RRID:SCR_017168) | MidSouth Bioinformatics Center, MBC | access service resource, core facility, service resource, software resource | Core provides bioinformatics consulting, training, technical assistance, and access to computational infrastructure for faculty, students, and researchers in region with their bioscience computational needs. Offers private sessions, workshops and training on specialty topics. Computing resources including software, computing cluster, technical advice. | bioinformatics, assistance, consulting, training, analysis, omic, data | has parent organization: University of Arkansas; Arkansas; USA | Open | SCR_017168 | Bioinformatics Center, , University of Arkansas, UA, Core Facility, MBC, UALR, MidSouth, Little Rock | 2026-08-29 11:30:34 | 0 | ||||||||
|
HmtVar Resource Report Resource Website 10+ mentions |
HmtVar (RRID:SCR_017288) | data or information resource, database, service resource | Manually curated database offering variability and pathogenicity information about mtDNA variants. Human mitochondrial variants data of healthy and diseased subjects.Data and text mining pipeline to annotate human mitochondrial variants with functional and clinical information. | manually, curated, data, variability, mitochondria, pathogenicity, mtDNA, variant, human, bio.tools |
uses: HmtDB - Human Mitochondrial DataBase uses: 1000 Genomes Project and AWS uses: MITOMAP - A human mitochondrial genome database uses: MutPred uses: SNPsandGO is listed by: Debian is listed by: bio.tools is affiliated with: University of Bologna; Bologna; Italy has parent organization: University of Bari; Bari; Italy |
DHOMOS Worldwide Cancer Research ; DISCO TRIP ; Italian Ministry of Health ; Rosa Maria Massari fellowship from the Italian Association for Cancer Research |
PMID:30371888 PMID:31821723 |
Free, Freely available | biotools:HmtVar | https://bio.tools/HmtVar | SCR_017288 | 2026-08-29 11:30:24 | 12 | ||||||
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EPSD Eukaryotic Phosphorylation Site Database Resource Report Resource Website 1+ mentions |
EPSD Eukaryotic Phosphorylation Site Database (RRID:SCR_016514) | EPSD | data or information resource, database | Software tool as an annotated database of protein phosphorylation sites in eukaryotes. Contains experimentally identified and conserved p-sites which were collected from phosphoproteomic studies. | protein, phosphorylation, site, eukaryotes, phosphoproteomic, data | has parent organization: Huazhong University of Science and Technology; Wuhan; China | Special Project on Precision Medicine under the National Key R&D Program 2017YFC0906600; the Fundamental Research Funds for the Central Universities 2017KFXKJC001; the Natural Science Foundation of China 31671360 |
Free, Freely available | SCR_016514 | Eukaryotic Phosphorylation Site Database, EPSD | 2026-08-29 11:30:22 | 1 | |||||||
|
fiddle Resource Report Resource Website 1+ mentions |
fiddle (RRID:SCR_017327) | FIDDLE | service resource, software application, software resource | Software interactive tool to help researchers to identify most appropriate publication format for their dataset that may be hard to publish in traditional journals. Formats include data repositories, micropublications, preprints, data journals, publishing platforms and journals that are open to null results. Users can search for publication format that meets their needs, compare and contrast formats, and find links to publishers. Open source tool to combat publication bias by getting research out of file drawer and into scientific community. | identify, publication, format, dataset, , result, file, drawer, data, liberation, effort | DOI:10.31219/osf.io/6mcu3 | Free, Freely available | https://github.com/quest-bih/FIDDLE | SCR_017327 | file drawer data liberation effort, fiddle | 2026-08-29 11:30:24 | 2 | |||||||
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ROIs selection with a non-graphical user interface Resource Report Resource Website 1+ mentions |
ROIs selection with a non-graphical user interface (RRID:SCR_016352) | application programming interface, data access protocol, software resource | It is non-graphical user interface in MATLAB which relies on keyboard callback functions. Used for analyzing big data sets. | non graphical, user, interface, keyboard, callback, function, analysis, big, data, set | is related to: MATLAB | Free, Available for download, Freely available | https://ptrrupprecht.wordpress.com/2015/06/24/a-simple-non-graphical-user-interface-in-matlab-keyboard-callback-functions/ | SCR_016352 | 2026-08-29 11:30:22 | 4 | |||||||||
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Altered States Database Resource Report Resource Website 1+ mentions |
Altered States Database (RRID:SCR_016350) | ASDB | data or information resource, database | Database as an open science framework with a scientific data extracted from scientific literature about various altered states of consciousness assessed with questionnaires. Used to compare what experiences are elicited by different drugs and non-pharmacological methods that induce altered states to help to understand human consciousness functions. Is listed by Neuroimaging Informatics Tools. | altered, state, database, comprised, questionnaire, data, consciousness, neuroscience | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | VolkswagenStiftung ; Wikimedia Foundation ; Stifterverband |
DOI:10.17605/OSF.IO/8MBRU | Free, Freely available | http://alteredstatesdb.org/#focus | SCR_016350 | Altered States Database | 2026-08-29 11:30:34 | 2 | |||||
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KEGG PATHWAY Database Resource Report Resource Website 1000+ mentions |
KEGG PATHWAY Database (RRID:SCR_018145) | data or information resource, database, service resource | Reference database for pathway mapping in KEGG Mapper. Collection of manually drawn pathway maps representing knowledge on molecular interaction, reaction and relation networks for metabolism, genetic information processing, environmental information processing, cellular processes, organisms systems, human diseases, drug development. | Pathway mapping, reference database, KEGG Mapper, molecular interaction, reaction and relation network, metabolism, genetic information processing, cellular process, organism system, human disease, drug development, data | is related to: KEGG | Free, Freely available | SCR_018145 | KEGG PATHWAY | 2026-08-29 11:30:46 | 1224 | |||||||||
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CellPhoneDB Resource Report Resource Website 100+ mentions |
CellPhoneDB (RRID:SCR_017054) | data or information resource, database | Collection of publicly available data of curated receptors, ligands and their interactions. Integrates existing datasets that pertain to cellular communication and new manually reviewed information. Used to search for particular ligand or receptor or to interrogate single cell transcriptomics data. | collection, publicly, available, data, curated, receptor, ligand, interaction, heterometric, complex, dataset, cellular, transcriptomic, FASEB list |
has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom works with: UniProt works with: Ensembl works with: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) works with: IMEx - The International Molecular Exchange Consortium works with: International Union of Basic and Clinical Pharmacology |
PMID:30429548 | Free, Available for download, Freely available | https://github.com/Teichlab/cellphonedb | SCR_017054 | 2026-08-29 11:30:23 | 469 |
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