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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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University of Nebraska Medical Center Animal Behavior Core Facility Resource Report Resource Website 1+ mentions |
University of Nebraska Medical Center Animal Behavior Core Facility (RRID:SCR_018830) | access service resource, core facility, service resource | Provides investigators with expertise, equipment, and space that is required to conduct innovative acoustic, behavioral, and cognitive research with focus on rigor, reproducibility, and maintaining the highest standards of animal welfare. | USEDit, acoustic, behavioral, cognitive, expertise, equipment, space service, ABRF, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: University of Nebraska; Nebraska; USA |
NIGMS 1P20GM130447 | Restricted | ABRF_1021 | https://coremarketplace.org/?FacilityID=1021 | SCR_018830 | UNMC Animal Behavior Core, University of Nebraska Medical Center UNMC Animal Behavior Core, Animal Behavior Core | 2026-09-12 01:04:07 | 7 | ||||||
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Louisiana State University Pennington Biomedical Research Center Genomics Core Facility Resource Report Resource Website |
Louisiana State University Pennington Biomedical Research Center Genomics Core Facility (RRID:SCR_018675) | GCF | access service resource, core facility, service resource | Provides services which include Sanger and next-generation DNA sequencing,DNA fragment analysis,qualitative and quantitative analysis of DNA, protein, and RNA samples, quantitative PCR, microarray RNA labeling, hybridization, and scanning robotics,bioinformatics.Individual and small group training and consultation services are offered for sequence analysis, real-time PCR, next-generation sequencing and microarray analysis. | USEDit, Sanger sequencing, next generation DNA sequencing, DNA fragment analysis, quality, quantity, analysis, DNA, protein, RAN, qPCR, microarray RNA labeling, hybridization, scanning robotics, training, ABRF | is listed by: ABRF CoreMarketplace | NIDDK 2P30DK072476; NIGMS 1P30GM118430 |
Open | ABRF_434 | https://coremarketplace.org/?FacilityID=434 | SCR_018675 | Pennington Genomics Core, Pennington Biomedical Research Center Genomics Core | 2026-09-12 01:04:07 | 0 | |||||
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South Carolina Medical University Mass Spectrometry Core Facility Resource Report Resource Website 1+ mentions |
South Carolina Medical University Mass Spectrometry Core Facility (RRID:SCR_017959) | access service resource, core facility, service resource | Core provides expertise, services, education, and instrumentation to enhance biomedical research through LC-MS/MS-based proteomics. Services are offered for protein identification; characterization of post-translational modifications; and quantitative proteomics to identify differentially expressed/degraded proteins, regulated sites of post-translational modification, protein-protein interactions, and protein targets of drugs identified in phenotypic screens. Analyses include sample preparation, LC-MS/MS, database searching, generation of reports, and assistance with data interpretation. Faculty and staff assist with experimental design and development/optimization of customized methodology for analysis of post-translationally modified peptides (e.g. phosphorylation and O-GlcNAc modification, N- and O-linked glycosylation, Cys modifications including S-glutathionylation, and glycation of Lys and Arg). Quantitative approaches including metabolic labeling (SILAC), isobaric tagging (iTRAQ/TMT), and label free proteomics (LFQ) are performed on Orbitrap Elite or Orbitrap Fusion Lumos Mass Spectrometers. Developes methodology to identify alterations in post-translational modifications that impact signal transduction, transcription, translation, and response to therapeutics with goal of enabling investigators to discover molecular mechanisms underlying disease progression and therapeutic response. | Mass, spectrometry, expertise, service, education, instrumentation, proteomics, protein, identification, characterization, post translational, modification, target, drug, identification, phenotypic, screen, analysis, disease, service, core, ABRF | is listed by: ABRF CoreMarketplace | NIGMS P20 GM103542; NIH Office of the Director S10 OD010731 |
ABRF_985 | SCR_017959 | MUSC Mass Spectrometry Facility | 2026-09-12 01:04:06 | 1 | ||||||||
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Vermont University Proteomics Core Facility Resource Report Resource Website 10+ mentions |
Vermont University Proteomics Core Facility (RRID:SCR_018667) | access service resource, core facility, service resource | Provides central resource of mass spectrometry based proteomics technologies to identify, characterize and quantify target proteins in various biological and biomedical samples. Provides mass spectrometry expertise for analyzing proteins and peptides for proteomics studies, support for data analysis from proteomics measurements, training in proteomics methods, and experimental design. | USEDit, mass spectrometry, proteomics technology, protein, biomedical sample, protein analysis, peptide, measurement, experimental design, ABRF | is listed by: ABRF CoreMarketplace | NIGMS P20 GM103449 | Open | ABRF_44 | https://coremarketplace.org/?FacilityID=44 | https://vgn.uvm.edu/proteomics/ | SCR_018667 | UVM-Proteomics Facility, University of Vermont Proteomics Facility | 2026-09-12 01:04:07 | 14 | |||||
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University of New Hampshire University Instrumentation Center Core Facility Resource Report Resource Website |
University of New Hampshire University Instrumentation Center Core Facility (RRID:SCR_021101) | UIC | access service resource, core facility, service resource | University wide core facility offers NMR,SEM including FIB, EBS, EBSD, Tensile Stage,Confocal,X-Ray Photoelectron Spectroscopy,X-Ray Microscope aka Micro CT, Expert analysis of research and industrial samples,Training in scientific instrument operation and data analysis, Maintenance, repair, and calibration of instruments,Specialty instrument engineering design and application services,Facilitation of access to scientific instruments throughout the university. | USEDit, ABRF, ABRF | is listed by: ABRF CoreMarketplace | NIGMS GM113131; NSF 1337897; NSF 1429282; NSF 1828319; NSF OIA 1757371 |
open | ABRF_640 | https://coremarketplace.org/?FacilityID=640 | SCR_021101 | University Instrumentation Center, University of New Hampshire University Instrumentation Center | 2026-09-12 01:04:10 | 0 | |||||
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Creighton University Flow Cytometry Core Facility Resource Report Resource Website |
Creighton University Flow Cytometry Core Facility (RRID:SCR_028881) | access service resource, core facility, service resource | Core provides flow cytometry services. | ABRF, flow cytometry services, |
is listed by: ABRF CoreMarketplace has parent organization: Creighton University; Nebraska; USA |
NIGMS 3P20GM139762; NIGMS 3R01GM102487 |
Restricted | ABRF_6145 | https://coremarketplace.org/?FacilityID=6145&citation=1 | SCR_028881 | CU Flow Cytometry Core | 2026-09-12 01:06:01 | 0 | ||||||
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Ocean State Research Institute Providence VA Medical Center Cell Isolation and Organ Function Core Facility Resource Report Resource Website |
Ocean State Research Institute Providence VA Medical Center Cell Isolation and Organ Function Core Facility (RRID:SCR_028797) | CIOF Core | access service resource, core facility, service resource | Core provides investigators with access to specialized expertise in primary cell isolation, ex vivo organ function assessment, histology, and advanced tissue imaging. The Core supports cardiovascular, pulmonary, and vascular research through customized experimental services, consultation, and rigorous functional and molecular analyses that accelerate mechanistic discovery and translational research. | ABRF, Primary Cell Isolation, Endothelial Cell Biology, Cardiac Fibroblasts, Ex Vivo Organ Function, Vascular Function, Histology, Immunohistochemistry, Immunofluorescence, RNAscope, Quantitative Image Analysis, Tissue Phenotyping, Cardiovascular Biology, Pulmonary Biology, Translational Research | is listed by: ABRF CoreMarketplace | NIGMS P30GM149398 | ABRF_6114 | https://coremarketplace.org/RRID:SCR_028797/?citation=1 | SCR_028797 | , Cell Isolation and Organ Function (CIOF) Core | 2026-09-12 01:05:59 | 0 | ||||||
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BEERS2 Resource Report Resource Website |
BEERS2 (RRID:SCR_027287) | simulation software, software application, software resource, source code | Software for simulation of RNA-seq reads. Combines flexible and highly configurable design with detailed simulation of entire library preparation and sequencing pipeline and is designed to include effects of polyA selection and RiboZero for ribosomal depletion, hexamer priming sequence biases, GC-content biases in polymerase chain reaction (PCR) amplification, barcode read errors and errors during PCR amplification. | RNA-seq reads, simulation of RNA-seq reads, | NCATS 5UL1TR000003; NHLBI R01HL147472; NHLBI R01HL155934; NIGMS DP2GM146251 |
PMID:38605641 | Free, Available for download, Freely available | SCR_027287 | 2026-09-12 01:05:23 | 0 | |||||||||
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CytoML Resource Report Resource Website 1+ mentions |
CytoML (RRID:SCR_027485) | software resource, software toolkit, source code | Software R package that enables cross-platform import, export, and sharing of gated cytometry data. It currently supports Cytobank, FlowJo, Diva, and R, allowing users to import gated cytometry data from commercial platforms into R. | Cross-platform cytometry data sharing, cross-platform import, export, sharing, gated cytometry data, import gated cytometry data, | Bill and Melinda Gates Foundation ; NIAID UM1 AI068635; NIGMS R01 GM118417 |
PMID:30551257 | Free, Available for download, Freely available | https://www.bioconductor.org/packages/release/bioc/html/CytoML.html | SCR_027485 | 2026-09-12 01:05:28 | 6 | ||||||||
|
BioLiP Resource Report Resource Website 100+ mentions |
BioLiP (RRID:SCR_027685) | data or information resource, database | Semi-manually curated database for biologically relevant ligand-protein binding interactions. Structure data are collected primarily from Protein Data Bank (PDB), with biological insights mined from literature and other specific databases. Database used for serving needs of ligand-protein docking, virtual ligand screening and protein function annotation.BioLiP2 offers significantly greater coverage of nucleic acid-protein interactions, and interactions involving large complexes, integrates structural alignment algorithms with structure prediction techniques, which enables composite protein structure and sequence-based searching. | curated database, ligand-protein binding interactions, ligand-protein docking, virtual ligand screening, protein function annotation, | uses: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) | National Science Foundation ; NIGMS GM083107; NIGMS GM084222 |
PMID:23087378 PMID:37522378 |
Free, Freely available | SCR_027685 | BioLiP2 | 2026-09-12 01:05:33 | 127 | |||||||
|
SQuIRE Resource Report Resource Website 10+ mentions |
SQuIRE (RRID:SCR_027719) | SQuIRE | software resource, software toolkit, source code | Software RNA-seq analysis pipeline that provides quantitative and locus-specific picture of Transposable Elements expression. | RNA-seq analysis, quantitative and locus-specific picture of TE expression, Transposable Elements expression, | NIGMS P50GM107632; NIGMS R01GM124531 |
PMID:30624635 | Free, Available for download, Freely available | SCR_027719 | , Software for Quantifying Interspersed Repeat Expression (SQuIRE), Software for Quantifying Interspersed Repeat Expression | 2026-09-12 01:05:34 | 11 | |||||||
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BISCUIT Resource Report Resource Website 1+ mentions |
BISCUIT (RRID:SCR_028006) | software resource, software toolkit | Software application for simultaneous genetic and epigenetic inference in bulk and single-cell studies. Used to perform alignment, DNA methylation and mutation calling, and allele specific methylation from bisulfite sequencing data. Analyzing sodium bisulfite conversion-based DNA methylation/modification data. | simultaneous genetic and epigenetic inference, analyzing sodium bisulfite conversion-based DNA methylation/modification data, perform alignment, DNA methylation, mutation calling, allele specific methylation, bisulfite sequencing data, | NCI R37CA230748; NCI U24CA264023; NIGMS R35GM146978 |
PMID:38412294 | Free, Available for download, Freely available | SCR_028006 | , BISulfite-seq CUI Toolkit, BISulfite-seq CUI Toolkit (BISCUIT) | 2026-09-12 01:05:41 | 2 | ||||||||
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EpiProfile Resource Report Resource Website |
EpiProfile (RRID:SCR_028224) | software application, software resource, source code | Software tool for processing Epi-Proteomics mass spectrometry data. Discriminates isobaric histone peptides using distinguishing fragment ions in their tandem mass spectra and extracts the chromatographic area under the curve using previous knowledge about peptide retention time. Nanoflow liquid chromatography coupled with high resolution tandem mass spectrometry-based quantification tool for histone peptides, which can also be adapted to analyze nonhistone protein samples. EpiProfile 2.0 is extended version of v1.0 for enhanced quantification of histone peptides based on LC-MS/MS analysis. | LC-MS/MS analysis, peptide, quantification, histone, quantification of histone peptides, quantification of histone peptides based on LC-MS/MS analysis, mass spectrometry data, | NCATS TL1TR001880; NCI CA196539; NIAID AI118891; NIGMS GM110174; NIGMS T32GM008275; UPenn Epigenetics Institute |
PMID:25805797 PMID:29790754 |
Free, Available for download, Freely available | SCR_028224 | EpiProfile 2.0 | 2026-09-12 01:05:46 | 0 | ||||||||
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HiTAIC Resource Report Resource Website |
HiTAIC (RRID:SCR_028181) | data access protocol, software resource, web service | Web-based application to trace tumor tissue of origin in primary and metastasized cancers. | Tumor classifier, trace tumor tissue of origin, primary and metastasized cancers, | NCI P30CA023108; NCI R01CA216265; NCI R01CA253976; NCI R01CA275974; NIGMS P20GM104416 |
PMID:37089814 | Free, Freely available | SCR_028181 | Hierarchical Tumor Artificial Intelligence Classifier | 2026-09-12 01:05:45 | 0 | ||||||||
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mergem Resource Report Resource Website |
mergem (RRID:SCR_028616) | software resource, software toolkit | Software Python package and command-line tool for merging, comparing, and translating genome-scale metabolic models. | merging, comparing, translating, genome-scale metabolic models, | is organization facet of: University of Maryland; Maryland; USA | NIGMS R35GM137953 | PMID:38312936 | Free, Available for download, Freely available | https://zenodo.org/records/10740987 | SCR_028616 | 2026-09-12 01:05:55 | 0 | |||||||
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University of Kansas Nanofabrication Core Facility Resource Report Resource Website |
University of Kansas Nanofabrication Core Facility (RRID:SCR_028756) | access service resource, core facility, service resource | Provides manufacturing micro- and nanofluidic devices for biomedical research, equipment and resources for applications with micro- and nanofabrication needs. Facility conisists of ISO class 7 cleanroom space, housing tools and materials for techniques including photolithography, nano-imprint lithography, plasma (dry) etching (ICP-RIE), wet etching, thin film deposition, scanning electron microscopy (VP-SEM), atomic force microscopy, contact angle goniometry, ellipsometry, profilometry, wafer dicing, wire bonding, laser ablation and engraving, 3D printing, hot embossing, and COMSOL software for device modeling. In addition, the facility has numerous microscopes for general inspection, ovens and furnaces, ultrapure water, and dedicated process fume hoods. | ABRF, nanofabrication cleanroom facility, biomedical research device, device manufacturing, |
is listed by: ABRF CoreMarketplace has parent organization: University of Kansas; Kansas; USA |
NIGMS P30GM145499 | Restricted | ABRF_6056 | https://coremarketplace.org/?FacilityID=6056&citation=1 | SCR_028756 | University of Kansas Nanofabrication Facility (KUNF) | 2026-09-12 01:05:59 | 0 | ||||||
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MARIA Resource Report Resource Website |
MARIA (RRID:SCR_028673) | software resource, web application | Web multimodal recurrent neural network tool designed to predict HLA-II (Human Leukocyte Antigen class II) peptide ligand presentation. It uses cell HLA alleles, peptide sequences, and source genes to evaluate antigen presentation. Used for predicting the likelihood of antigen presentation from a gene of interest in the context of specific HLA class II alleles. | multimodal recurrent neural network, predicting likelihood of antigen presentation, gene of interest, specific HLA class II alleles, | is organization facet of: Stanford University; Stanford; California | NCI K08 CA207882; NCI U01 CA194389; NCRR S10RR027431; NIGMS GM 102365 |
PMID:31611695 | Free, Freely available | SCR_028673 | MARIA:Major Histocompatibility Complex Analysis with Recurrent Integrated Architecture | 2026-09-12 01:05:57 | 0 | |||||||
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University of Arkansas AIMRC Data Science Core Facility Resource Report Resource Website |
University of Arkansas AIMRC Data Science Core Facility (RRID:SCR_028681) | access service resource, core facility, service resource | Core specializes in artificial intelligence-based approaches to elucidate relationships between large imaging, bioenergetics, genomic, and proteomic data sets. Provided services include: 1) foundational training for those getting started with high-performance computing and Arkansas Research Platform (ARP), 2) training and support for the collaborative use of a 508 TB data storage server exclusively maintained for and catering to AIMRC researchers, 3) training for Python programming, basic data mining, and machine learning, 4) training and support for using open-source deep learning based biomedical imaging resources (e.g., ZeroCostDL4Mic and Bioimage Model Zoo), and 5) customized solutions for deep learning based and large foundational models based biomedical imaging analysis, multi-omics data integration and analysis, and quantitative analysis pipelines for large data sets. | ABRF, Center of Biomedical Research Excellence (COBRE), data science services, large imaging, bioenergetics, genomic, proteomic, data sets, |
is listed by: ABRF CoreMarketplace has parent organization: University of Arkansas; Arkansas; USA |
NIGMS P20GM139768 | ABRF_6033 | https://coremarketplace.org/RRID:SCR_028681/?citation=1 | SCR_028681 | , Arkansas Integrative Metabolic Center (AIMRC) Data Science Core | 2026-09-12 01:05:57 | 0 |
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