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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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DeepBehavior Resource Report Resource Website |
DeepBehavior (RRID:SCR_021414) | data analysis software, data processing software, software application, software resource, software toolkit | Software toolbox that automates taking high speed quality video to track behavior to analyze and track behavior in rodents and humans. | track behavior, analyze and track behavior, rodent, human, automated analysis, imaging data, OpenBehavior |
is listed by: OpenBehavior is related to: DeepBehavior project |
DOI:10.3389/fnsys.2019.00020 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/deepbehavior/ | SCR_021414 | 2026-09-03 04:57:17 | 0 | ||||||||
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Biobanque de Picardie Resource Report Resource Website |
Biobanque de Picardie (RRID:SCR_004731) | biomaterial supply resource, material resource, tissue bank | A secure repository of biological samples and data dedicated for medical and research purposes. These biological samples are linked to consenting patient relative data. Biobanque de Picardie provides quality and traceability services for establishment, conservation and use of biological samples collections. It houses collections of human tissue in a variety of areas of disease. Samples are used in basic research and translational studies, physiopathology of diseases and identification of new diagnostic, and as prognostic or therapeutic biomarkers. Biobanque de Picardie also develops healthy or pathological human primary stem cell banks, such as: mesenchymal stem cells in umbilical cord (HUC-MSC), primary hepatocytes (HPH), peripheral blood mononuclear cells (PBMC), and fibroblasts. Biological samples are stored at - 80 degrees C in electric freezers, at - 196 degrees C in liquid nitrogen or -130 degrees C in nitrogen vapor. | tissue, stem cell, mesenchymal stem cell, fibroblast, frozen, liquid nitrogen, cryopreserved, fresh, normal control, internal medicine, pediatrics, biobank, human |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Picardie Jules Verne; Amiens; France |
Anti-phospholipid antibody syndrome, Ovarian cancer, Hepathocellular carcinoma, Chlamydia, Acute alcoholic hepatitis, Hepatitis B, Hepatitis C, HT 21, Celiac disease, Crohn's disease, Ulcerative colitis, Giant cell arteritis, Blood disorder, Leukemia, Mastocytosis, Lymphoma, Myeloma, Obesity, Acute Pancreatitis, Rheumatoid arthritis, Kidney transplant, Human immunodeficiency virus | French Ministry of Research ; FEDER |
For the scientific community | nlx_73857 | http://www.biobanque-picardie.com/indexang.htm | SCR_004731 | 2026-09-03 05:01:57 | 0 | ||||||
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BrainImmune Resource Report Resource Website |
BrainImmune (RRID:SCR_005418) | BrainImmune | blog, data or information resource, narrative resource | BrainImmune is a free web-based reference that provides comprehensive and up-to-date information on the broad spectrum of medical research related to brain-immune interactions and their impact on health and disease. BrainImmune is written collaboratively by experts in the field from all around the world. Here, concise summaries of basic and clinical research describe how the brain and the immune system ''talk'' to each other in order to maintain homeostasis. BrainImmune is continually updated, with articles and opinions on history, the present state of the art, and new ideas and conceptual frameworks for the neurohormonal- and stress-immune interactions and their implications for common human diseases. Our goal in developing BrainImmune is to facilitate and advance neuroendocrine-immunology research, and the communication and collaborations in this vast interdisciplinary area. | brain, immune system, history, regulatory pathway, stress, basic research, clinical research, history, article, opinion, human, disease, neuroendocrine, immunology, research, cytokine, image | nlx_144514 | SCR_005418 | BrainImmune - Reference Source for Bridging Neurosciences and Immunology, Brain Immune | 2026-09-03 05:01:38 | 0 | |||||||||
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NeuroPsyDoctor8 Resource Report Resource Website |
NeuroPsyDoctor8 (RRID:SCR_005471) | NeuroPsyDoctor8 | blog, data or information resource, narrative resource | Called The Marquis de fMRI by Dr. Anon, NeuroPsyDoctor8 is about neurolaw and related moral cognition research, by someone who has a forensic psych type biz in NYC & then decided to pursue a neuropsych PhD. Now she uses fMRI and a side of bourbon to figure it all out. | neurolaw, cognition, neuropsychiatry, fmri, forensic, human, research, neuroscience, psychiatry, neuroethics | nlx_144588 | SCR_005471 | 2026-09-03 05:02:04 | 0 | ||||||||||
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NIMH Video Resource Report Resource Website |
NIMH Video (RRID:SCR_005594) | NIMH Video | data or information resource, video resource | A provider for videos available from the National Institute of Mental Health (NIMH). Visitors may sort by topic and/or subscribe to RSS feeds. | mental health, research, multimedia, trauma, diversity, ethnicity, imaging, medication, suicide, treatment, human | has parent organization: National Institute of Mental Health | NIMH | nlx_146218 | http://www.nimh.nih.gov/news/media/video/index.shtml | SCR_005594 | National Institute of Mental Health Video | 2026-09-03 05:02:00 | 0 | ||||||
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BrainBlogger - YouTube Resource Report Resource Website |
BrainBlogger - YouTube (RRID:SCR_005469) | BrainBlogger - YouTube | data or information resource, video resource | BrainBlogger - YouTube are videos uploaded to YouTube by Brain Blogger. Brain Blogger covers topics from multidimensional biopsychosocial perspectives. It reviews the latest news and stories related to neuroscience, psychiatry, and neurology. It serves as a focal point for attracting new minds beyond the science of the mind-and-brain and into the biopsychosocial model. | brain, human, neuroscience, psychiatry, neurology, biopsychosocial | has parent organization: Brain Blogger | Global Neuroscience Initiative Foundation | nlx_144586 | SCR_005469 | Brain Blogger - YouTube | 2026-09-03 05:01:39 | 0 | |||||||
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Published Association Database Resource Report Resource Website |
Published Association Database (RRID:SCR_001841) | PADB | data or information resource, database | It aims to help researchers to utilize information more efficiently from the published association data. This database is freely accessible only for academic users under the GNU GPL PADB indexes the sentences containing "associat*" or "case-control*" or "cohort*" or "meta-analysis" or "systematic review" or "odds ratio*" or "hazard ratio*" or "risk ratio*" or "relative risk*" from PubMed abstracts and automatically extracts the numeric values of odds ratios, hazard ratios, risk ratios and relative risks data when available. PADB automatically identifies HUGO official symbols of human genes using NCBI Entrez Gene data, and each gene is linked to the UCSC genome browser and International HapMap Project database. Furthermore, molecular pathways listed in BioCarta or KEGG databases can be accessed through the link using CGAP gene annotation data. Also, each record in PADB is linked to GAD or HPLD if it is available from those databases. Currently, (Last Update of Database Contents : Dec. 20, 2006) PADB indexes more than 1,500,000 abstracts including about 190,000 risk values ranging from 0.00001 to 4878.9 and 3,442 human genes related to 461 molecular pathways. Sponsors: This work was supported by the Brain Korea 21 Project for Medical Science, Yonsei University, Seoul, Korea and a faculty research grant of Yonsei University College of Medicine for 2006, Seoul, Korea. | gene, genome, hazard ratio, hugo, human, index, molecular pathway, ncbi, numeric value, ratio, risk ration, symbol | PMID:17877839 | Free, Freely available | nif-0000-10405 | http://medclue.com/padb/ | SCR_001841 | Published Association Database | 2026-09-03 05:01:18 | 0 | ||||||
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Surface-Based Atlases Resource Report Resource Website 1+ mentions |
Surface-Based Atlases (RRID:SCR_002099) | Caret:Atlases | atlas, data or information resource, database | THIS RESOURCE IS NO LONGER IS SERVICE. Documented on July,29,2022. Surface-based atlases of human, macaque, rat and mouse cerebral and cerebellar cortices derived from structural MRI volumes developed in the Van Essen laboratory can be downloaded by direct links on the SumsDB database and can be viewed using freely available Caret (offline) and WebCaret (online) software. The human and macaque atlases include a large and growing compendium of experimental data pertaining to the structural and functional organization of primate cerebral cortex. | atlas, human, macaque, mouse, cerebral cortex, cerebellar cortex, database, primate, magnetic resonance imaging, neuroanatomy |
is listed by: Biositemaps has parent organization: Washington University in St. Louis; Missouri; USA |
PMID:22052704 | THIS RESOURCE IS NO LONGER IS SERVICE. | nif-0000-00346 | SCR_002099 | Surface-Based Atlas | 2026-09-03 05:01:44 | 2 | ||||||
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German Collection of Microorganisms and Cell Cultures Resource Report Resource Website 100+ mentions |
German Collection of Microorganisms and Cell Cultures (RRID:SCR_001711) | DSMZ | data or information resource, database | The DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (German Collection of Microorganisms and Cell Cultures) is the most comprehensive biological resource center in Europe. With more than 18.000 microorganisms, 1.200 plant viruses, 600 human and animal cell lines, 770 plant cell cultures and more than 7.100 cultures deposited for the purposes of patenting, DSMZ has demonstrated their obligation to serve science for decades. Main functions of DSMZ are: - to collect, maintain and store microorganisms and cell lines, as well as other biological material of relevance for applied biology, biotechnology, microbiology, teaching and other areas of research and general application; - to keep the scientific and industrial community informed on the contents of the collections by the means of catalogs, special lists, databases or electronic media; - to supply scientists and institutions with DSMZ cultures, in accordance with national and international laws such as the Infektionsschutzgesetz (Act dealing with protection against infection), the Genetic Engineering Act, the Foreign Trade Laws, the Convention on Biological Diversity as well as the DSMZ terms of supply; - to function as an internationally recognized collection center for the deposit of microorganisms, cell lines, and other biological material which have been cited in scientific literature or which are used in national or international test procedures (e.g. type strains, reference strains for national and international quality control regulations or susceptibility tests, strains with special properties, such as the production of enzymes, degradation of pollutants, host strains for plasmids, etc.); - to act as an International Depositary Authority (IDA) for the deposit of biological material for patent purposes according to the Budapest Treaty; - to act, in a confidential manner, as a center for the safe deposit of biological material; - to act as an advisory center for the scientific community and to offer teaching and service facilities. The DSMZ collections contain over 26 000 cultures (including 6500 patent deposits) representing more than 16 000 cultures of microorganisms (Archaea, Bacteria, plasmids, phages, yeasts, fungi), 750 plant cell cultures, 600 plant viruses, 700 antisera and 580 human and animal cell lines. Unique subcollections are held in the prokaryotes groups of acidophiles, alkaliphiles, halophiles, methanogens, phototrophs, thermophiles, and sulfate reducers. The research is focused on collection related fields which include: - Taxonomy - Evolution - Phylogeny - Microbial diversity and molecular assessment of diversity - Molecular systematics - Research on pathobiological aspects of leukemia-lymphoma cell lines applying classical and molecular genetics, immunological and cell biological methods * Development of cultivation and preservation methods for biological material * Characterization and identification of biological material | enzyme, europe, evolution, fungus, genetic, acidophile, alkaliphile, animal, antisera, archaea, bacteria, biological, biology, biotechnology, cell, cell culture, culture, degradation, diversity, halophile, host, human, human cell line, immunological, leukemia, literature, lymphoma, methanogen, microbial, microbiology, microorganism, molecular, pathobiological, phage, phototroph, phylogeny, plant, plant virus, plasmid, pollutant, prokaryote, reducer, research, science, scientific, strain, sulfate, systematic, taxonomy, thermophile, virus, yeast, FASEB list |
is listed by: DataCite is listed by: re3data.org is parent organization of: SILVA works with: Cellosaurus |
PMID:18080463 | Free, Freely Available | DOI:10.17616/R3G88X, nif-0000-10209, r3d100010219, DOI:10.13145 | https://doi.org/10.17616/R3G88X, https://doi.org/10.17616/r3G88X, https://doi.org/10.13145/, https://dx.doi.org/10.13145/, https://doi.org/10.17616/R3G88X | SCR_001711 | Leibniz Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures | 2026-09-03 05:01:17 | 424 | |||||
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Genome Network Platform Resource Report Resource Website 10+ mentions |
Genome Network Platform (RRID:SCR_001737) | GNP | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Integrated database of experiment data generated by participating research institutes and public databases relating to: 1) transcription starting position of human genes in the human genome, 2) conjunction to control region on transcriptional factors and the human genome 3) protein-protein interaction with a central focus on transcription factors organized for use in genome level research. Gene Search is the function to search the integrated database by using keywords and public IDs. The search results can be visualized by: * Genome Explorer : provides annotation of landmarks (genes, transcription start sites, etc.) aligned in accordance with their genome locations. * PPI Network : provides a graphical view of protein-protein interaction (PPI) network from the experimental data generated under the project and the public datasets. * Expression Profile : clusters genes by expression pattern and display the result with heatmap. The function provides genes which have relation of coregulation and anti-coregulation. * Comparison Viewer : This function gives the view to compare the genomic regions between human and mouse homologous genes. The viewer shows the distribution of transcription start sites (TSS) as the way of separable by tissues or time points with other landmarks on genome region. * Gene Stock : This is the function to save the gene list that you are interested until the session is closed. | gene, genome, chip, human, interaction, micro array, protein, protein-protein interaction, qrt-pcr, rat, rna, sequence, short rna, tiling array, transcription, transcription control, transcription factor, transcription starting position, yeast two hybrid, data set, cage, data analysis service |
is listed by: 3DVC has parent organization: National Institute of Genetics; Shizuoka; Japan |
PMID:24927841 | Free, Freely Available | nif-0000-10237 | http://genomenetwork.nig.ac.jp/index_e.html | SCR_001737 | 2026-09-03 05:01:42 | 20 | ||||||
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Pathway Articulator Resource Report Resource Website 1+ mentions |
Pathway Articulator (RRID:SCR_002101) | PathArt | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 15, 2013. A comprehensive collection of manually curated information from literature as well as public domain databases on signaling and metabolic pathways. PathArt includes a dynamic pathway articulator component, which builds molecular interaction networks from curated databases. PathArt provides a tool for analysis, biological interpretation and visualization of microarray data results in these curated pathways. In addition, PathArt provides a collection of high priority disease and physiology pathways with emphasis on pathway responsive genes and knockouts. The coverage is for pathways of Human, Rat and Mouse for cell specific, tissue specific and organism specific data. The present version of PathArt covers the following: -Includes 3527 regulatory and signaling pathways across diseases and physiologies. -Provides information on 39 high priority diseases, and pathway and disease responsive genes. -Provides pathway information on 23 diverse physiologies. -Covers information on ~8783 Knockouts and ~18000 mutation data points. -Coverage of pathways for Human, Mouse and Rat for cell specificity, tissue specificity and organism specific data. | cell, human, metabolic, molecular, mouse, pathway, physiology, rat, regulatory, signaling | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-20883 | SCR_002101 | Pathway Articulator | 2026-09-03 05:01:03 | 1 | ||||||||
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Arabidopsis Nucleolar Protein Database Resource Report Resource Website 1+ mentions |
Arabidopsis Nucleolar Protein Database (RRID:SCR_001793) | AtNoPDB | data or information resource, database, image | Database of proteins found in the nucleoli of Arabidopsis, identified through proteomic analysis. The Arabidopsis Nucleolar Protein database (AtNoPDB) provides information on the plant proteins in comparison to human and yeast proteins, and images of cellular localizations for over a third of the proteins. A proteomic analysis was carried out of nucleoli purified from Arabidopsis cell cultures and to date 217 proteins have been identified. Many proteins were known nucleolar proteins or proteins involved in ribosome biogenesis. Some proteins, such as spliceosomal and snRNP proteins, and translation factors, were unexpected. In addition, proteins of unknown function which were either plant-specific or conserved between human and plant, and proteins with differential localizations were identified. | image, plant protein, plant, protein, homologue, blast, human proteome, orthologue, human, yeast, cell culture, blast, nucleolar protein | has parent organization: James Hutton Institute; Scotland; United Kingdom | Scottish Executive Environment and Rural Affairs Department ; BBSRC |
PMID:15608277 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02562 | SCR_001793 | AtNoPDB Database | 2026-09-03 05:01:42 | 7 | |||||
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Database of the Human Proteotheque Initiative Resource Report Resource Website |
Database of the Human Proteotheque Initiative (RRID:SCR_002076) | data or information resource, database | The Human Proteotheque Initiative is a multidisciplinary project aimed at building a repertoire of comprehensive maps of human protein interaction networks. The information contained in the Proteotheque is made publicly available through an interactive web site that can be consulted to visualize some of the fundamental molecular connections formed in human cells and to determine putative functions of previously uncharacterized proteins based on guilt by association. The process governing the evolution of HuPI towards becoming a repository of accurate and complete protein interaction maps is described. | function, cell, human, interaction, protein | PMID:18443628 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-20836 | http://hupi.ircm.qc.ca/hupi/index.jsp | SCR_002076 | HuPI | 2026-09-03 05:01:01 | 0 | |||||||
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Hazardous Substances Data Bank Resource Report Resource Website 10+ mentions |
Hazardous Substances Data Bank (RRID:SCR_002374) | HSDB | data or information resource, database | A toxicology database that focuses on the toxicology of potentially hazardous chemicals. It provides information on human exposure, industrial hygiene, emergency handling procedures, environmental fate, regulatory requirements, nanomaterials, and related areas. The information in HSDB has been assessed by a Scientific Review Panel. | emergency handling, environment, exposure, analytical, chemical, hazardous, human, hygiene, industrial, methodology, pharmacology, regulation, regulatory, substance, toxicology, toxicology database, transformation | has parent organization: National Library of Medicine | PMID:15138039 PMID:14728459 PMID:11164971 PMID:10164468 PMID:8545846 |
nif-0000-21201, r3d100011209 | https://doi.org/10.17616/R3BD01 | SCR_002374 | Hazardous Substances DataBank, HSDB - A TOXNET DATABASE | 2026-09-03 05:00:55 | 10 | ||||||
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NHGRI Dog Genome Project Resource Report Resource Website 1+ mentions |
NHGRI Dog Genome Project (RRID:SCR_002256) | NHGRI Dog Genome Project | data or information resource, database | The Dog Genome Project at the National Human Genome Research Institute is working to develop resources necessary to map and clone canine genes in an effort to utilize dogs as a model system for genetics and cancer research. The US National Human Genome Research Institute (NHGRI) agreed to fund a project to sequence the entire genome of a boxer dog named Tasha, because it recognized the value of the dog as an unrivaled model for the study of human disease. The National Human Genome Research Institute (NHGRI) led the National Institutes of Health's (NIH) contribution to the International Human Genome Project, which had as its primary goal the sequencing of the human genome. This project was successfully completed in April 2003. Now, the NHGRI's mission has expanded to encompass a broad range of studies aimed at understanding the structure and function of the human genome and its role in health and disease. To that end NHGRI supports the development of resources and technology that will accelerate genome research and its application to human health. A critical part of the NHGRI mission continues to be the study of the ethical, legal and social implications (ELSI) of genome research. NHGRI also supports the training of investigators and the dissemination of genome information to the public and to health professionals. | gene, genetic, cancer, canine, clone, disease, dog, genome, health, human, map, model, system | PMID:16102268 | nif-0000-20975 | SCR_002256 | National Human Genome Research Institute Dog Genome Project | 2026-09-03 05:01:45 | 1 | ||||||||
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Database of Transcribed Sequences Resource Report Resource Website 10+ mentions |
Database of Transcribed Sequences (RRID:SCR_002334) | data or information resource, database | DoTS (Database Of Transcribed Sequences) is a human and mouse transcript index created from all publicly available transcript sequences. The input sequences are clustered and assembled to form the DoTS Consensus Transcripts that comprise the index. These transcripts are assigned stable identifiers of the form DT.123456 (and are often referred to as dots). The transcripts are in turn clustered to form putative DoTS Genes. These are assigned stable identifiers of the form DG.1234356. As of September 1, 2004, the DoTS annotation team has manually annotated 43,164 human and 78,054 mouse DoTS Transcripts (DTs), corresponding to 3,939 human and 7,752 mouse DoTS Genes (DGs). Use the manually annotated gene query to see the DoTS Transcripts that have been manually annotated. The focus of the DoTS project is integrating the various types of data (e.g., EST sequences, genomic sequence, expression data, functional annotation) in a structured manner which facilitates sophisticated queries that are otherwise not easy to perform. DoTS is built on the GUS Platform which includes a relational database that uses controlled vocabularies and ontologies to ensure that biologically meaningful queries can be posed in a uniform fashion. An easy way to start using the site is to search for DoTS Transcripts using an existing cDNA or mRNA sequence. Click on the BLAST tab at the top of the page and enter your sequence in the form provided. All the transcripts with significant sequence similarity to your query sequence will be displayed. Or use one of the provided queries to retrieve transcripts using a number of criteria. These queries are listed on the query page, which can also be reached by clicking on the tab marked query at the top of the page. Finally, the boolean query page allows these queries to be combined in a variety of ways. Sponsors: Funding provided by -NIH grant RO1-HG-01539-03 -DOE grant DE-FG02-00ER62893 | expression, functional, gene, annotation, biological, cdna, genomic, human, index, model organisms and comparative genomics databases, mouse, mrna, sequence, structure, transcribed, transcript | has parent organization: University of Pennsylvania; Philadelphia; USA | nif-0000-21125 | SCR_002334 | DoTs | 2026-09-03 05:01:22 | 15 | |||||||||
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Human Experimental/FunctionAL MaPper: Providing Functional Maps of the Human Genome Resource Report Resource Website |
Human Experimental/FunctionAL MaPper: Providing Functional Maps of the Human Genome (RRID:SCR_003506) | HEFalMp | data or information resource, database, service resource | HEFalMp (Human Experimental/FunctionAL MaPper) is a tool developed by Curtis Huttenhower in Olga Troyanskaya's lab at Princeton University. It was created to allow interactive exploration of functional maps. Functional mapping analyzes portions of these networks related to user-specified groups of genes and biological processes and displays the results as probabilities (for individual genes), functional association p-values (for groups of genes), or graphically (as an interaction network). HEFalMp contains information from roughly 15,000 microarray conditions, over 15,000 publications on genetic and physical protein interactions, and several types of DNA and protein sequence analyses and allows the exploration of over 200 H. sapiens process-specific functional relationship networks, including a global, process-independent network capturing the most general functional relationships. Looking to download functional maps? Keep an eye on the bottom of each page of results: every functional map of any kind is generated with a Download link at the bottom right. Most functional maps are provided as tab-delimited text to simplify downstream processing; graphical interaction networks are provided as Support Vector Graphics files, which can be viewed using the Adobe Viewer, any recent version of Firefox, or the excellent open source Inkscape tool. | human, map, gene, functional, pathway, disease, genomic, analysis, microarray, dna, protein, sequence | has parent organization: Princeton University; New Jersey; USA | New Jersey Commission on Cancer Research ; PhRMA Foundation 2007RSGl9572; NIGMS R01 GM071966; NSF DBI-0546275; NSF IIS-0513552; NHGRI T32 HG003284; NIGMS P50 GM071508 |
PMID:19246570 | nif-0000-37186 | SCR_003506 | Human Experimental / FunctionAL MaPper, Human Experimental/FunctionAL MaPper | 2026-09-03 05:01:26 | 0 | ||||||
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IPI Resource Report Resource Website 50+ mentions |
IPI (RRID:SCR_003012) | IPI | data or information resource, database | IPI provides a top level guide to the main databases (UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, RefSeq, Ensembl, TAIR, H-InvDB, Vega) that describe the proteomes of higher eukaryotic organisms. IPI: :1. effectively maintains a database of cross references between the primary data sources :2. provides minimally redundant yet maximally complete sets of proteins for featured species (one sequence per transcript) :3. maintains stable identifiers (with incremental versioning) to allow the tracking of sequences in IPI between IPI releases. IPI is updated monthly in accordance with the latest data released by the primary data sources. As previously announced, the closure of IPI has been proposed for some time. Replacement data sets are now available through UniProt for human and mouse; sets for the other species contained within IPI are expected to be included as part of the UniProt release 2011_07. To allow users time to transition to using the new UniProt data sets, IPI releases will continue to be produced throughout the summer. The final release will be made in September 2011. Thereafter, the IPI website will cease to be maintained, although previous releases of the dataset will continue to be available from the FTP site. We would like to thank our users for their support and interest in this service. | human, mouse, rat, zebrafish, arabidopsis, chicken, cow, bio.tools |
is listed by: bio.tools is listed by: Debian is related to: UniProt DAS has parent organization: European Bioinformatics Institute works with: PremierBiosoft Proteo IQ Software |
PMID:15221759 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:ipi, nif-0000-03043 | https://bio.tools/ipi | SCR_003012 | International Protein Index, IPI - International Protein Index | 2026-09-03 05:01:19 | 76 | |||||
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GEMINI Resource Report Resource Website 500+ mentions |
GEMINI (RRID:SCR_014819) | software resource | Framework for exploring genetic variation in the context of the genome annotations available for the human genome. Users can load a VCF file into a database and each variant is automatically annotated by comparing it to several genome annotations from source such as ENCODE tracks, UCSC tracks, OMIM, dbSNP, KEGG, and HPRD. | framework, genetic variation, annotation, human, genome, vcf, database, , bio.tools, FASEB list |
uses: KEGG uses: ENCODE uses: OMIM uses: dbSNP uses: HPRD - Human Protein Reference Database is listed by: Debian is listed by: bio.tools has parent organization: University of Utah; Utah; USA |
DOI:10.1371/journal.pcbi.1003153 | Freely available | biotools:gemini | https://github.com/arq5x/gemini, https://bio.tools/gemini | SCR_014819 | GEnome MINIng (GEMINI), GEMINI - a flexible framework for exploring genome variation, Genome Mining, GEnome MINIng | 2026-09-03 04:52:46 | 532 | ||||||
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Intramural Research Program Resource Report Resource Website 500+ mentions |
Intramural Research Program (RRID:SCR_012734) | NIA IRP | data or information resource, organization portal, portal | A research program of the NIA which focuses on neuroscience, aging biology, and translational gerontology. The central focus of the program's research is understanding age-related changes in physiology and the ability to adapt to environmental stress, and using that understanding to develop insight about the pathophysiology of age-related diseases. The IRP webpage provides access to other NIH resources such as the Biological Biochemical Image Database, the Bioinformatics Portal, and the Baltimore Longitudinal Study of Aging., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | endocrinology, epidemiology, genetics, behavioral science, biochemistry, biomedical, cancer, cardiology, cell biology, clinical research, cognition, collaboration, gerontology, healthy, hematology, human, immunology, molecular biology, neurobiology, neurogenetics, neuroscience, oncology, osteoarthritis, pathophysiology, physiology, psychology, psychophysiology, research, rheumatology, age-related disease, healthy aging, alzheimer's disease, parkinson's disease, stroke, atherosclerosis, osteoarthritis, diabetes, cancer |
has parent organization: National Institute on Aging is parent organization of: NIA Mouse cDNA Project Home Page is parent organization of: Biological Biochemical Image Database is parent organization of: GERON is parent organization of: Baltimore Longitudinal Study of Aging (BLSA) |
Aging, Age-related disease, Healthy aging, Alzheimer's disease, Parkinson's disease, Atherosclerosis, Osteoarthritis, Cancer, Diabetes, Stroke | NIA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-09468 | SCR_012734 | National Institute on Aging Intramural Research Program, Intramural Research Program in the NIA, Intramural Research Program in the National Institute on Aging, NIA Intramural Research Program, Intramural Research Program of the National Institute on Aging | 2026-09-03 04:59:44 | 919 |
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