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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Behavioral Segmentation of Open-field in DeepLabCut Resource Report Resource Website 1+ mentions |
Behavioral Segmentation of Open-field in DeepLabCut (RRID:SCR_021385) | B-SOiD | data analysis software, data processing software, software application, software resource, software toolkit | Software pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.Unsupervised learning algorithm that discovers and classifies actions based on inherent statistics of data points provided. | OpenBehavior, pairs unsupervised pattern recognition, supervised classification, behavior predictions, discovers actions, classifies actions |
is listed by: OpenBehavior is related to: Behavioral Segmentation of Open-field in DeepLabCut project is related to: Closed Loop Automated Reaching Apparatus |
DOI:10.1101/770271 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/b-soid-unsupervised-behavior-analysis/ | SCR_021385 | B-SOiD v2.0 | 2026-08-29 11:27:17 | 6 | ||||||
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Social LEAP Resource Report Resource Website 1+ mentions |
Social LEAP (RRID:SCR_021382) | SLEAP | software resource | Method for pose estimation that uses deep neural networks.Open source software tool as deep learning based framework for estimating positions of animal body parts.Supports multi animal pose estimation and tracking, and includes advanced labeling or training.SLEAP is next generation of LEAP and allows for tracking multiple animals. | Estimating positions, animal body parts, multi animal pose estimation, multi animal pose tracking, Princeton University, OpenBehavior |
is listed by: OpenBehavior is related to: SLEAP, LEAP and MotionMapper project has parent organization: Princeton University; New Jersey; USA |
NSF GRFP ; DGE 1148900;Princeton Porter Ogden Jacobus Fellowship;NIMH R00 MH109674;NIGMS DP2 GM137424;NSF ; DEB 1754476;R01 NS104899;NSF ; PHY 1734030; |
DOI:10.1101/2020.08.31.276246 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/sleap/ | SCR_021382 | Social LEAP Estimates Animal Pose | 2026-08-29 11:27:09 | 9 | |||||
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Stytra project Resource Report Resource Website |
Stytra project (RRID:SCR_021416) | data or information resource, instrument resource, portal, project portal | Project related to involvement in larval zebrafish behavioral experiments.Provides integrated system for stimulation, tracking and closed loop behavioral experiments. Provides timed stimulus presentation, interfacing with external devices and simultaneous real time tracking of behavioral parameters such as position, orientation, tail and eye motion in both freely swimming and head restrained preparations. | Control stimulation, track behaviour, closed loop behavioral experiments, larval zebrafish, behavioral parameters, position, orientation, tail, eye motion, freely swimming, head restrained, DeepLabCut, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Stytra |
DOI:10.1371/journal.pcbi.1006699 | Free, Freely available | SCR_021416 | Stytra | 2026-08-29 11:27:09 | 0 | ||||||||
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Online Animal Tracker Resource Report Resource Website 1+ mentions |
Online Animal Tracker (RRID:SCR_021412) | OAT | data processing software, image processing software, software application, software resource | Software tool as real time position tracker for behavioral research. Used for processing images, extracting object position information, and streaming data to disk and/or the network in real time. | Real time animal position tracking, experimental neuroscience, real time object tracking, processing images, extracting object position information, streaming data to disk, OpenBehavior |
is listed by: OpenBehavior is related to: Online Animal Tracker project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/oat/ | SCR_021412 | 2026-08-29 11:27:09 | 2 | ||||||||
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LocoWhisk project Resource Report Resource Website 1+ mentions |
LocoWhisk project (RRID:SCR_021430) | data or information resource, instrument resource, portal, project portal | Portable behavioural set up that incorporates both gait analysis (using pedobarograph) and whisker movements (using high speed video camera and infrared light source).Automatically records both whisker and gait information and provides added statistical tools to analyse data. LocoWhisk system includes ARTv2 software for simultaneous measurement of locomotion behaviours and whisker movements. | Simultaneous measurement, locomotion behaviours, whisker movements, rodent behaviour, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2019.108440 | Free, Freely available | SCR_021430 | LocoWhisk | 2026-08-29 11:27:17 | 1 | ||||||||
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FaceSync project Resource Report Resource Website |
FaceSync project (RRID:SCR_021393) | data or information resource, instrument resource, portal, project portal | Project related to emotions and facial expressions. Includes open source guide to building affordable head mount for camera to maintain high temporal and spatial resolution of face throughout duration of experiment. Device is paired with FaceSync, Python toolbox which automatically synchronizes recorded facial expressions to videos and events such as social interactions. | Automatically synchronize videos, manually align audio, plot facial landmark movements, graph data, head mounted camera setup, 3D blueprints, recording facial expressions, OpenBehavior, Bio.Tools, Instrument |
is listed by: OpenBehavior is related to: FaceSync |
PMID:32185017 | Free, Freely available | SCR_021393 | 2026-08-29 11:27:09 | 0 | |||||||||
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Head-Fixed Setup for Combined Behavior, Electrophysiology, and Optogenetics project Resource Report Resource Website |
Head-Fixed Setup for Combined Behavior, Electrophysiology, and Optogenetics project (RRID:SCR_021427) | data or information resource, instrument resource, portal, project portal | Project related to temporally controlled rodent behavior. Provides system which utilizes optimal open source setup of hardware and software through behavioral setup for temporally controlled rodent behavior. Used for combined behavior, electrophysiology and optogenetics experiments. System allows for training of head fixed animals with calibrated sound stimuli, precisely timed fluid and air puff presentations as reinforcers.Combines microcontroller based behavior control with sound delivery system for acoustic stimuli, fast solenoid valves for reinforcement delivery and custom built sound attenuated chamber. | Head fixed animals training, calibrated sound stimuli, timed fluid reinforcer, air puff presentations reinforce, temporally controlled rodent behavior, Bonsai, Bpod, Open Ephys, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.3389/fnsys.2018.00018 | Free, Freely available | SCR_021427 | Electrophysiology, and Optogenetics, Head-Fixed Setup for Combined Behavior | 2026-08-29 11:27:09 | 0 | ||||||||
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KineMouse Wheel project Resource Report Resource Website |
KineMouse Wheel project (RRID:SCR_021425) | data or information resource, instrument resource, portal, project portal | Project is related to Columbia University designed KineMouse Wheel, light weight running wheel for head fixed locomotion that allows for 3D positioning of mice with single camera. System uses single camera and DeepLabCut (or similar) software. | Behavior apparatus, behavioral analysis system, running wheel, head fixed locomotion in mice, OpenBehavior, Instrument |
is listed by: OpenBehavior has parent organization: Columbia University; New York; USA |
DOI:10.7554/eLife.63596 | Free, Freely available | SCR_021425 | KineMouse Wheel | 2026-08-29 11:27:17 | 0 | ||||||||
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Mousecam project Resource Report Resource Website |
Mousecam project (RRID:SCR_021422) | data or information resource, instrument resource, portal, project portal | Project related to capturing detailed behavior in freely moving mice. System combines lightweight head mounted camera and head movement sensors to detect behaviors in mice. Used to monitor behaviors including eye position, whisking, and ear movements in unrestrained animals.Can be mounted in combination with neural implants for recording brain activity.Provides software Python package with functions for extracting and analyzing data recorded using camera. | Lightweight head mounted camera system, head movement sensors, monitor eye position, monitor pupil dilation, monitor whisking, monitor pinna movements, monitor head motion, unrestrained mice, freely behaving mice, multichannel electrophysiology, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Mousecam |
DOI:10.1016/j.neuron.2018.09.020 | Free, Freely available | SCR_021422 | Mousecam | 2026-08-29 11:27:10 | 0 | ||||||||
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Capactive Touch Sensor project Resource Report Resource Website |
Capactive Touch Sensor project (RRID:SCR_021486) | data or information resource, instrument resource, portal, project portal | Project related to accurately counting and monitoring the behavior of organisms.Provides open source capacitive touch sensing system.Capacitive sensors are positioned to readily detect direct physical touches from rodent under investigation. Device,designed around capacitive touch sensor MPR121,accurately counts and monitors behavior of organisms. | Capacitive touch sensing system, capacitive sensor, detect direct physical touch, rodent touch, capacitive touch sensor, MPR121 sensor, accurate count, organism behavior monitoring, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1016/j.mex.2020.101024 | Free, Freely available | SCR_021486 | Capactive Touch Sensor | 2026-08-29 11:27:18 | 0 | ||||||||
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Two Armed Bandit Task project Resource Report Resource Website 1+ mentions |
Two Armed Bandit Task project (RRID:SCR_021483) | 2ABT | data or information resource, instrument resource, portal, project portal | Project related to training mice on task that requires continued updating of action/outcome relationships. Behavioral project includes task protocol and corresponding build instructions.Open source behavioral box used to train mice on task that requires continued updating of action/outcome relationships. Permits investigation of motivated behavior that requires flexible relationships between sensory stimuli and motor action. Project provided by Harvard Medical School scientists. | Behavioral box, train mice, action continued updating, outcome relationships updating, motivated behavior investigation, flexible relationships, sensory stimuli, motor action, OpenBehavior, Instrument |
is listed by: OpenBehavior has parent organization: Harvard Medical School; Massachusetts; USA |
Free, Freely available | SCR_021483 | Two Armed Bandit Task | 2026-08-29 11:27:11 | 2 | ||||||||
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FinchScope project Resource Report Resource Website |
FinchScope project (RRID:SCR_021484) | data or information resource, instrument resource, portal, project portal | Project related to fluorescent imaging. Provides single photon fluorescent imaging microscope systems. System includes modular in vivo all optical neurophysiology rigs with transparent hardware, and acquisition and analysis software.Provide designs for 3D printed, lightweight, wireless capable microscope and motorized commutator, designed for multi month monitoring neural activity of zebra finches while they sing their courtship songs. Adapted for rodents and birds such as canaries. | Single photon, fluorescent imaging, microscope systems, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1088/1741-2552/aa6806 | Free, Freely available | SCR_021484 | FinchScope | 2026-08-29 11:27:18 | 0 | ||||||||
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UCLA Miniscope project Resource Report Resource Website 1+ mentions |
UCLA Miniscope project (RRID:SCR_021480) | data or information resource, instrument resource, portal, project portal | Project related to fluorescence imaging to record neural activity in awake, freely behaving mice.Provided system is developed by UCLA scientists. Miniscope system includes Miniscope with single, flexible coaxial cable to carry power, control signals, and imaging data to open source Data Acquisition hardware and software. Open source miniature fluorescence microscope uses wide-field fluorescence imaging to record neural activity in awake, freely behaving mice. | Miniature fluorescence microscope, wide field fluorescence imaging, record neural activity, activity record, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: E-Scope has parent organization: University of California at Los Angeles; California; USA |
SCR_021480 | UCLA Miniscope | 2026-08-29 11:27:18 | 2 | ||||||||||
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Quantifying Animal Movement from Pre-recorded Videos Resource Report Resource Website |
Quantifying Animal Movement from Pre-recorded Videos (RRID:SCR_021515) | STL | data processing software, image analysis software, image processing software, software application, software resource, software toolkit | Software toolbox for visualizing and quantifying movement from pre-recorded videos.Used for summarizing animal movement data as single image ( spectral time lapse algorithm) as well as automate analysis of animal movement data. | Visualizing movement, quantifying movement, pre-recorded videos movement, summarizing animal movement data, single image, automate analysis, animal movement data, movement tracking, path analysis, video visualization, video summarization, image analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Quantifying Animal Movement from Pre-recorded Videos project |
DOI:10.12688/f1000research.3-19.v1 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/offline-behavior-video-analysis/ | SCR_021515 | Spectral Time Lapse, STL Toolbox | 2026-08-29 11:27:12 | 0 | ||||||
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Platform for Acoustic STArtle Resource Report Resource Website |
Platform for Acoustic STArtle (RRID:SCR_021516) | ratPASTA | data processing software, data visualisation software, software application, software resource, software toolkit | Software package for processing and visualising data from startle experiments in rodents or experiments measuring grip strength in rodents. | Startle experiments, rodent, experiments measuring rodents grip strength, OpenBehavior |
is listed by: OpenBehavior is related to: Platform for Acoustic STArtle project |
DOI:10.1038/s41598-021-82710-6 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/pasta/, https://github.com/ikodvanj/ratPASTA/ | SCR_021516 | Platform for Acoustic STArtle | 2026-08-29 11:27:19 | 0 | ||||||
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FaceMap Resource Report Resource Website 10+ mentions |
FaceMap (RRID:SCR_021513) | data analysis software, data processing software, software application, software resource | Software toolbox for unsupervised video analysis of rodent behavior.Used for videographic processing of head fixed rodent behavior. | Unsupervised video analysis, rodent behavior, videographic processing, head fixed rodent behavior, head fixed rodent, OpenBehavior |
is listed by: OpenBehavior is related to: FaceMap project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/facemap/ | SCR_021513 | 2026-08-29 11:27:11 | 22 | |||||||||
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Skinner Box Resource Report Resource Website |
Skinner Box (RRID:SCR_021514) | data acquisition software, data analysis software, data processing software, software application, software resource | Software tool for data logging and analysis. | Open Skinner Box, data logging, data analysis, behavioral system, OpenBehavior |
is listed by: OpenBehavior is related to: Skinner Box project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/open-skinner-box/ | SCR_021514 | 2026-08-29 11:27:19 | 0 | |||||||||
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Bonsai Resource Report Resource Website 10+ mentions |
Bonsai (RRID:SCR_021512) | data acquisition software, data processing software, software application, software resource | Software tool as event based framework for processing and controlling data streams. Open source software tool as visual language for reactive programming.Used for composing reactive and asynchronous data streams coming from video cameras, microphones, electrophysiology systems or data acquisition boards. | Reactive programming visual language, composing reactive data streams, composing asynchronous data streams, video cameras data, microphones data, electrophysiology systems data, data acquisition boards, OpenBehavior |
is listed by: OpenBehavior is related to: Bonsai project |
DOI:10.3389/fninf.2015.00007 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/bonsai/ | SCR_021512 | 2026-08-29 11:27:12 | 13 | ||||||||
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Rigbox Resource Report Resource Website 1+ mentions |
Rigbox (RRID:SCR_021517) | data management software, software application, software resource | Open source software MATLAB toolbox for running behavioral neuroscience experiments and managing data.Used for probing neurons and behavior. Used for managing behavioral neuroscience experiments and acquiring experiment related data. | Managing behavioral neuroscience experiments, running behavioral neuroscience experiments, managing data, acquiring experiment related data, OpenBehavior |
is listed by: OpenBehavior is related to: Rigbox project |
DOI:10.1523/eneuro.0406-19.2020 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/rigbox/ | SCR_021517 | 2026-08-29 11:27:11 | 5 | ||||||||
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Ardbark project Resource Report Resource Website |
Ardbark project (RRID:SCR_021494) | data or information resource, instrument resource, portal, project portal | Project related to fear conditioning studies.Includes hardware and software tools. Provides Arduino based device for producing naturalistic stimuli which can be integrated with existing commercial operant chambers with few modifications.. Stores custom made .wav files on SD card, interfaces with Med System and plays the .wav files through ceiling mounted speakers. | Arduino based device, naturalistic stimuli, behavioral response, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021494 | Ardbark | 2026-08-29 11:27:19 | 0 |
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