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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Virus Outbreak Data Network Resource Report Resource Website 1+ mentions |
Virus Outbreak Data Network (RRID:SCR_018285) | VODAN | data or information resource, portal | Network as federated AI-ready repository of COVID-19 data adherent to FAIR principles. SARS CoV-2 virus data FAIR, meaning that they are Findable, Accessible, Interoperable and thus Reusable by both humans and machines, during this epidemic of COVID-19. | COVID-19 data, repository of COVID-19 data, FAIR principles, SARS CoV-2 virus data, | COVID-19 | Free, Freely available | SCR_018285 | VODAN Implementation Network | 2026-08-29 11:28:59 | 2 | ||||||||
|
CoVIC-DB Database Resource Report Resource Website 1+ mentions |
CoVIC-DB Database (RRID:SCR_018339) | CoVIC-DB | catalog, data or information resource, database | Serves as clearinghouse for monoclonal antibodies against SARS-CoV-2. Database will catalog contributed antibodies in searchable resource and provide interactive analysis tools for comparisons among them. Most potent antibodies will guide development of vaccines to stop current outbreak and protect against future pandemics. | SARS-CoV-2, monoclonal antibodies, antibody, antibody contribution, analysis, antibody based immunotherapy, COVID-19, COVID-19 data | is related to: Coronavirus Immunotherapy Consortium | COVID-19 | Bill and Melinda Gates Foundation ; Wellcome and MasterCard Impact Fund |
Free, Freely available | SCR_018339 | Coronavirus Immunotherapy Consortium Database | 2026-08-29 11:28:17 | 2 | ||||||
|
Nextstrain Resource Report Resource Website 100+ mentions |
Nextstrain (RRID:SCR_018223) | data or information resource, data set, portal, project portal | Open source project to harness scientific and public health potential of pathogen genome data. Provides continually updated view of publicly available data alongside powerful analytic and visualization tools for use by community. Used to aid epidemiological understanding and improve outbreak response. Open source SARS-CoV-2 genome data and analytic and visualization tools. | Pathogen genome data, data, analytic tool, visualization tool, epidemiology, outbreak response |
is listed by: Data and Computational Resources to Address COVID-19 is related to: SARS-CoV-2 mutation effects and 3D structure prediction from sequence covariation works with: Global Initiative on Sharing All Influenza Data |
COVID-19 | Free, Freely available | https://nextstrain.org/ncov/global | SCR_018223 | nextstrain.org | 2026-08-29 11:25:42 | 342 | |||||||
|
CoronaVIR Resource Report Resource Website 1+ mentions |
CoronaVIR (RRID:SCR_018338) | data or information resource, disease-related portal, portal, topical portal | Web based platform on COVID-19 to maintain predicted diagnostic, drug and vaccine candidates and computational resources on novel coronavirus SARS-CoV-2 and its resulting disease COVID-19. Provides collected and organized information from literature and other resources from internet, links to appropriate literature . Integrated multi-omics repository dedicated to current genomic, proteomic, diagnostic and therapeutic knowledge about coronaviruses. | COVID-19, SARS-CoV-2, diagnostic, drug, candidate, computational resource. coronavirus, disease, literature, genomic, proteomic, data | COVID-19 | DOI:10.31219/osf.io/xegzu | Free, Freely available | SCR_018351 | SCR_018338 | 2026-08-29 11:25:44 | 4 | ||||||||
|
EMBL-EBI COVID-19 Portal Resource Report Resource Website 10+ mentions |
EMBL-EBI COVID-19 Portal (RRID:SCR_018337) | data or information resource, data repository, database, disease-related portal, portal, service resource, storage service resource, topical portal | EMBL-EBI portal to enable researchers to upload, access and analyse COVID-19 related reference data and specialist datasets submitted to EMBL-EBI and other major centers for biomedical data. Used to facilitate data sharing and analysis to accelerate coronavirus research. The aim of the COVID-19 Data Portal is to facilitate data sharing and analysis, and to accelerate coronavirus research. EMBL-EBI and partners have set up the COVID-19 Data Portal, which will bring together relevant datasets submitted to EMBL-EBI and other major centres for biomedical data. The aim is to facilitate data sharing and analysis, and to accelerate coronavirus research. The COVID-19 Data Portal will enable researchers to upload, access and analyse COVID-19 related reference data and specialist datasets. The COVID-19 Data Portal will be the primary entry point into the functions of a wider project, the European COVID-19 Data Platform. | COVID-19, COVID-19 data, sequence, expression, protein sequence, protein structure, proteome, translatome, analysis, EMBL-EBI | is related to: EMBL-EBI Pathogens - COVID-19 | COVID-19 | Free, Freely available | SCR_018816 | https://www.covid19dataportal.org/, https://www.ebi.ac.uk/about/news/press-releases/embl-ebi-launches-covid-19-data-portal | SCR_018337 | EMBL-EBI COVID-19 Data Portal, COVID-19 Data Portal | 2026-08-29 11:26:06 | 20 | ||||||
|
NIH COVID-19 Portfolio Resource Report Resource Website 10+ mentions |
NIH COVID-19 Portfolio (RRID:SCR_018295) | data access protocol, data or information resource, service resource, software resource, web service | NIH comprehensive, curated source for publications related to COVID-19. Includes articles from PubMed and pre-prints from arXiv, medRxiv, bioRxiv, and ChemRxiv. Updated daily. NIH Office of Portfolio Analysis has developed this resource to explore and analyze set of advances in COVID‑19 research as they accumulate in real time, and complements efforts by NLM to aggregate full text documents broadly related to COVID-19 and other outbreaks, and articles on COVID‑19 specific to PubMed database. | COVID-19 publication, COVID-19 article, COVID-19 data, COVID-19 full text document, COVID-19 pre-print | COVID-19 | NIH | Free, Freely available | SCR_018295 | iSearch COVID-19 portfolio, COVID-19 Portfolio Tool From the Office of Portfolio Analysis, iSearch COVID-19 Portfolio, COVID-19 Portfolio | 2026-08-29 11:26:05 | 25 | ||||||||
|
American Diabetes Association COVID-19 Resources and Webinar Series Resource Report Resource Website |
American Diabetes Association COVID-19 Resources and Webinar Series (RRID:SCR_018346) | data or information resource, disease-related portal, portal, topical portal | Web page created by American Diabetes Association. Contains resources and information about COVID-19 for diabetes professionals and patients. ADA also provides online forum, webinar series and podcast. Online forum to exchange questions, answers, and best practices with leading clinicians from diabetes community. All ADA members can contribute, and any interested health professional can read forum and responses. | COVID-19, American Diabetes Association, diabetes, diabetes professional, diabetes patient, forum, webinar, podcast, data | COVID-19, Diabetes | Restricted | SCR_018346 | COVID-19 and Diabetes | 2026-08-29 11:26:07 | 0 | |||||||||
|
Frontier coronavirus funding monitor Resource Report Resource Website |
Frontier coronavirus funding monitor (RRID:SCR_018344) | data or information resource, disease-related portal, funding resource, portal, topical portal | Curated list of open funding calls and other support for researchers, non profit organizations and commercial organizations, specifically for COVID-19 and coronavirus related research. Non profit and commercial funding opportunities relevant to COVID-19. Updated daily. | COVID-19, COVID-19 list of open funding, funding support, COVID-19 support for researcher, COVID-19 support for organization, coronavirus | COVID-19 | Free, Freely available | SCR_018344 | Coronavirus Funding Monitor | 2026-08-29 11:26:06 | 0 | |||||||||
|
EMBL-EBI Pathogens - COVID-19 Resource Report Resource Website |
EMBL-EBI Pathogens - COVID-19 (RRID:SCR_018343) | data or information resource, disease-related portal, portal, topical portal | Data collection related to COVID-19 held at EMBL-EBI , including sequences of outbreak isolates and records related to coronavirus biology, protein expression, protein sequence, protein structure, proteome and translatome data and literature. | COVID-19, COVID-19 data, EMBL-EBI, sequences of outbreak isolates, coronavirus, protein expression, protein sequence, protein structure, proteome, translatome, data, COVID-19 literature | is related to: EMBL-EBI COVID-19 Portal | COVID-19 | Free, Freely available | SCR_018343 | 2026-08-29 11:25:44 | 0 | |||||||||
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2019 Novel Coronavirus Resource (2019nCoVR) by China National Center for Bioinformation Resource Report Resource Website 1+ mentions |
2019 Novel Coronavirus Resource (2019nCoVR) by China National Center for Bioinformation (RRID:SCR_018342) | 2019nCoVR | data or information resource, disease-related portal, portal, topical portal | Bioinformation related to COVID-19. Site developed and maintained by China National Center for Bioinformation. Collection of sequences, genome variations, publication, clinical resource data. | COVID-19, sequence, genome sequence, genome variation, data, China National Center for Bioinformation | COVID-19 | Free, Freely available | SCR_018342 | 2019 Novel Coronavirus Resource, 2019 Novel Coronavirus Resource (2019nCoVR), CNCB 2019nCoVR, CNCB 2019 Novel Coronavirus Resource | 2026-08-29 11:26:06 | 4 | ||||||||
|
COVID-19 Open Research Dataset Resource Report Resource Website 10+ mentions |
COVID-19 Open Research Dataset (RRID:SCR_018275) | data or information resource, data set, portal, topical portal | Dataset of scholarly articles, including full text, on COVID-19, SARS-CoV-2, and related coronaviruses. Machine readable resource provided to enable application of natural language processing and other AI techniques. Open resource for global research community. Updated weekly as new research is published in peer-reviewed publications and archival services like bioRxiv, medRxiv, and others. | COVID-19, COVID-19 data, COVID-19 scholarly article collection, machine readable resource, updated weekly |
is listed by: Data and Computational Resources to Address COVID-19 has parent organization: Allen Institute works with: CORD-19 Explorer |
COVID-19 | Free, Available for download, Freely available | SCR_018275 | CORD-19 | 2026-08-29 11:26:04 | 10 | ||||||||
|
Data and Computational Resources to Address COVID-19 Resource Report Resource Website 1+ mentions |
Data and Computational Resources to Address COVID-19 (RRID:SCR_018274) | data or information resource, disease-related portal, portal, topical portal | COVID-19 open access data and computational resources provided by federal agencies, including NIH, public consortia, and private entities. Continuously updated as more information becomes available. These resources are being shared for scientific and public health interests, and content is responsibility of resource organizers. | COVID-19, COVID-19 data, federal agency data, computational resource, public health information, SARS-CoV-2, NIH |
lists: Nextstrain lists: outbreak.info lists: Research Data Alliance Working Group lists: UC Health clinical data warehouse lists: Vivli lists: Cloud resources for COVID-19 research lists: COVID-19 High Performance Computing Consortium lists: Data-Against-COVID Team lists: NASEM Standing Committee on Emerging Infectious Diseases and 21st Century Health Threats lists: NIAID Overview of Coronaviruses lists: Schema.org lists: Virus Pathogen Resource (ViPR) lists: Modeling Infectious Disease Agents Study online portal for COVID-19 lists: LitCovid lists: Broad Terra cloud commons for pathogen surveillance lists: COVID-19 research data on Figshare lists: Dimensions COVID-19 publications, datasets and clinical trials lists: COVID-19 Open Research Dataset lists: Global Initiative on Sharing All Influenza Data |
COVID-19 | NIH | Free, Freely available | SCR_018817 | SCR_018274 | Open Access Data and Computational Resources to Address COVID-19, NIH Open-Access Data and Computational Resources to Address COVID-19 | 2026-08-29 11:26:06 | 1 | ||||||
|
LitCovid Resource Report Resource Website 10+ mentions |
LitCovid (RRID:SCR_018280) | data or information resource, portal, topical portal | NLM curated literature hub for COVID-19. Curated literature hub for tracking up-to-date scientific information about 2019 novel Coronavirus. Provides central access to relevant articles in PubMed. Articles are updated daily and are further categorized by different research topics and geographic locations for improved access. | COVID-19, COVID-19 data, COVID-19 literature | is listed by: Data and Computational Resources to Address COVID-19 | COVID-19 | DOI:10.1038/d41586-020-00694-1 | Free, Freely available | SCR_018280 | 2026-08-29 11:25:43 | 47 | ||||||||
|
SARS-CoV-2-Sequences Resource Report Resource Website 10+ mentions |
SARS-CoV-2-Sequences (RRID:SCR_018319) | data or information resource, data repository, data set, service resource, storage service resource | Collection of SARS-CoV-2 sequences currently available in GenBank genetic sequence database and Sequence Read Archive. Updated as additional sequences are released. | SARS-CoV-2, SARS coronavirus, SARS-CoV infection, Coronavirus, data, SARS-CoV-2 sequence collection, nucleotide, genome, Betacoronavirus, protein |
works with: GenBank works with: NCBI Sequence Read Archive (SRA) |
COVID-19 | The Federal Government | Free, Available for download, Freely available | SCR_018319 | Severe Acute Respiratory Syndrome CoronaVirus 2 Sequences | 2026-08-29 11:26:07 | 37 | |||||||
|
UC Health clinical data warehouse Resource Report Resource Website 1+ mentions |
UC Health clinical data warehouse (RRID:SCR_018284) | data or information resource, portal, topical portal | Data warehouse using Observational Medical Outcomes Partnership standard to integrate patient data across University of California health systems. Data asset created by electronic health records from six health systems as well as claims data from UC self-funded health plans and external sources of data such as Vizient and California Office of Statewide Health Planning and Development. Shared data and analytic environment designed to improve research and patient treatments. | Center for Data-driven Insights and Innovations, CDI2, clinical data warehouse, patient data, medical standard, University of California, health system, data integration | is listed by: Data and Computational Resources to Address COVID-19 | COVID-19 | SCR_018284 | 2026-08-29 11:25:43 | 6 | ||||||||||
|
Research Data Alliance Working Group Resource Report Resource Website 1+ mentions |
Research Data Alliance Working Group (RRID:SCR_018283) | RDA Working Group | data or information resource, portal, topical portal | Guidelines for data deposition in any common data hub or platform to facilitate data sharing in public health emergencies for scientific research. | RDA, COVID19, data deposition guidance, omics, clinical research, epidemiology, social sciences, community participation, data sharing, public health emergency | is listed by: Data and Computational Resources to Address COVID-19 | COVID-19 | Australian Government ; European Commission ; National Science Foundation and other U.S. agencies |
Restricted | SCR_018283 | Research Data Alliance COVID-19, RDA-COVID19 | 2026-08-29 11:26:04 | 6 | ||||||
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Modeling Infectious Disease Agents Study online portal for COVID-19 Resource Report Resource Website 1+ mentions |
Modeling Infectious Disease Agents Study online portal for COVID-19 (RRID:SCR_018281) | data or information resource, portal, topical portal | Portal for COVID-19 modeling research. Public access data collections with documented metadata.Computational models to study transmission dynamics of broad range of infectious diseases. | COVID-19, COVID-19 data, modeling research, public data, metadata, infectious disease | is listed by: Data and Computational Resources to Address COVID-19 | COVID-19 | NIGMS | Free, Freely available | https://github.com/midas-network/COVID-19 | SCR_018281 | MIDAS online portal for COVID-19 | 2026-08-29 11:26:04 | 4 | ||||||
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COVID-19 High Performance Computing Consortium Resource Report Resource Website 1+ mentions |
COVID-19 High Performance Computing Consortium (RRID:SCR_018287) | consortium, data or information resource, organization portal, portal | Consortium encompasses computing capabilities from powerful and advanced computers in the world. Used to empower researchers to accelerate understanding of COVID-19 virus and development of treatments and vaccines to help address infections. Teams who receive Consortium access will publish their results in open scientific literature. All supported projects will have name of principal investigator, project title and project abstract posted to COVID-19 HPC Consortium web site. | Supercomputer access, COVID-19 treatment, COVID-19 vaccine, COVID-19 project support, consortium access | is listed by: Data and Computational Resources to Address COVID-19 | COVID-19 | Restricted | SCR_018287 | COVID-19 High Performance Computing (HPC) Consortium, COVID-19 HPC Consortium | 2026-08-29 11:26:07 | 2 | ||||||||
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Global Initiative on Sharing All Influenza Data Resource Report Resource Website 1000+ mentions |
Global Initiative on Sharing All Influenza Data (RRID:SCR_018251) | GISAID | data or information resource, database, disease-related portal, portal, topical portal | Portal to share hCoV-19 genome sequences. Collection of genome sequences and related clinical and epidemiological data associated with coronavirus hCoV-19. Global repository of SARS-CoV-2 genomes. Initiative involves public-private-partnerships between Freunde of GISAID and governments of Federal Republic of Germany, Singapore and United States of America, with support from private and corporate philanthropy.International database of hCoV-19 genome sequences and related clinical and epidemiological data. Resource for influenza and hCoV-19 data. | hCoV19, hCoV-19 genome sequence, data, coronavirus, SARS coronavirus, Coronavirus, genome, genome database, influenza, SARS-CoV infection, SARS-CoV-2, COVID-19 |
lists: Health Data Research UK COVID-19 Initiative is listed by: Data and Computational Resources to Address COVID-19 is related to: SARS-CoV-2 mutation effects and 3D structure prediction from sequence covariation works with: Nextstrain |
CoV19, COVID19, COVID-19 | PMID:28382917 | Restricted | SCR_018279, r3d100010126, SCR_018318 | https://doi.org/10.17616/R3Q59F | SCR_018251 | 2026-08-29 11:26:03 | 2596 | |||||
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COVID-19 Crowd Generated Gene and Drug Set Library Resource Report Resource Website 1+ mentions |
COVID-19 Crowd Generated Gene and Drug Set Library (RRID:SCR_018252) | data access protocol, data or information resource, data repository, database, service resource, software resource, storage service resource, web service | Software tool as interface to submit, serve, and analyze COVID19 related gene and drug sets. Collection of gene and drug sets related to COVID-19 research contributed by community. | COVID-19 data collection, gene collection, drug set collection, data, COVID-19 | has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA | COVID-19, COVID19 | Free, Freely available | https://github.com/MaayanLab/covid19_crowd_library | SCR_018252 | 2026-08-29 11:26:06 | 4 |
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