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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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BioMarkers for SMA Data Portal Resource Report Resource Website 1+ mentions |
BioMarkers for SMA Data Portal (RRID:SCR_004920) | BforSMA | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. A publicly available tool that contains data from the BforSMA clinical study ( ClinicalTrials.gov, NCT00756821 ), a pilot study to identify candidate biomarkers in blood or urine from a wide range of Spinal Muscular Atrophy (SMA) patients that associate with disease severity. It is hoped that the identification of candidate biomarkers will lead to clinical efficacy and longitudinal natural history studies to verify these markers and enable their use as validated pharmacodynamic markers, longitudinal progression markers, or surrogate endpoint measures in clinical trials. | sma, biomarker, child, disease, genetic disease, clinical, proteomic, metabolomic, transcriptomic, blood, urine | has parent organization: Neuroscience Information Framework | Spinal Muscular Atrophy | SMA Foundation | PMID:23565191 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_88529 | http://neuinfo.org/bforsma http://transmart-dev.neuinfo.org/transmart/search | SCR_004920 | Biomarkers for Spinal Muscular Atrophy, BforSMA Data Portal, Biomarkers for SMA, Biomarkers for Spinal Muscular Atrophy Data Portal | 2026-09-05 06:31:27 | 2 | |||
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Mitelman Database of Chromosome Aberrations in Cancer Resource Report Resource Website 100+ mentions |
Mitelman Database of Chromosome Aberrations in Cancer (RRID:SCR_012877) | data or information resource, database | The web site includes genomic data for humans and mice, including transcript sequence, gene expression patterns, single-nucleotide polymorphisms, clone resources, and cytogenetic information. Descriptions of the methods and reagents used in deriving the CGAP datasets are also provided. An extensive suite of informatics tools facilitates queries and analysis of the CGAP data by the community. One of the newest features of the CGAP web site is an electronic version of the Mitelman Database of Chromosome Aberrations in Cancer. The data in the Mitelman Database is manually culled from the literature and subsequently organized into three distinct sub-databases, as follows: -The sub-database of cases contains the data that relates chromosomal aberrations to specific tumor characteristics in individual patient cases. It can be searched using either the Cases Quick Searcher or the Cases Full Searcher. -The sub-database of molecular biology and clinical associations contains no data from individual patient cases. Instead, the data is pulled from studies with distinct information about: -Molecular biology associations that relate chromosomal aberrations and tumor histologies to genomic sequence data, typically genes rearranged as a consequence of structural chromosome changes. -Clinical associations that relate chromosomal aberrations and/or gene rearrangements and tumor histologies to clinical variables, such as prognosis, tumor grade, and patient characteristics. It can be searched using the Molecular Biology and Clinical (MBC) Associations Searcher -The reference sub-database contains all the references culled from the literature i.e., the sum of the references from the cases and the molecular biology and clinical associations. It can be searched using the Reference Searcher. CGAP has developed six web search tools to help you analyze the information within the Mitelman Database: -The Cases Quick Searcher allows you to query the individual patient cases using the four major fields: aberration, breakpoint, morphology, and topography. -The Cases Full Searcher permits a more detailed search of the same individual patient cases as above, by including more cytogenetic field choices and adding search fields for patient characteristics and references. -The Molecular Biology Associations Searcher does not search any of the individual patient cases. It searches studies pertaining to gene rearrangements as a consequence of cytogenetic aberrations. -The Clinical Associations Searcher does not search any of the individual patient cases. It searches studies pertaining to clinical associations of cytogenetic aberrations and/or gene rearrangements. -The Recurrent Chromosome Aberrations Searcher provides a way to search for structural and numerical abnormalities that are recurrent, i.e., present in two or more cases with the same morphology and topography. -The Reference Searcher queries only the references themselves, i.e., the references from the individual cases and the molecular biology and clinical associations. Sponsors: This database is sponsored by the University of Lund, Sweden and have support from the Swedish Cancer Society and the Swedish Children''s Cancer Foundation | expression, gene, aberration, abnormality, biology, breakpoint, cancer, cancer databases, characteristic, chromosomal, chromosome, clinical, clone, cytogenetic, genomic, grade, hisotology, human, mice, molecular, morphology, nucleotide, patient, pattern, polymorphism, prognosis, reagent, rearrangement, sequence, single, structural, topography, transcript, tumor, FASEB list | nif-0000-21268 | SCR_012877 | Mitelman Database | 2026-09-05 06:32:03 | 116 | ||||||||||
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Syapse Resource Report Resource Website |
Syapse (RRID:SCR_012023) | Syapse | commercial organization, service resource, software resource | A platform and application suite for bringing together omics and clinical data. | medicine, molecular profiling, omics, clinical | is listed by: OMICtools | Commercial license | OMICS_02092 | SCR_012023 | 2026-09-05 06:32:02 | 0 | ||||||||
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Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) Resource Report Resource Website 100+ mentions |
Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) (RRID:SCR_013142) | BioLINCC | data or information resource, database | Repository that serves to coordinate searches across data and biospecimen collections from participants in numerous clinical trials and epidemiologic studies and to provide an electronic means for requests for additional information and the submission of requests for collections. The collections, comprising data from more than 80 trials or studies and millions of biospecimens, are available to qualified investigators under specific terms and conditions consistent with the informed consents provided by the individual study participants. Some datasets are presented with studies and supporting materials to facilitate their use in reuse and teaching. Datasets support basic research, clinical studies, observational studies, and demonstrations. Researchers wishing to apply to submit biospecimen collections to the NHLBI Biorepository for sharing with qualified investigators may also use this website to initiate that process. | cardiovascular, pulmonary, hematology, clinical, clinical trial, blood, lung, heart, biological specimen, health, disease, medicine, epidemiology, epidemiologic study, FASEB list |
is listed by: One Mind Biospecimen Bank Listing is listed by: DataCite is listed by: NIH Data Sharing Repositories is listed by: Connected Researchers is listed by: NIDDK Information Network (dkNET) is related to: NIH Data Sharing Repositories is related to: Framingham Heart Study has parent organization: National Heart Lung and Blood Institute |
NHLBI | Public, The community can contribute to this resource | r3d100010834, nlx_151758 | https://biolincc.nhlbi.nih.gov/, https://biolincc.nhlbi.nih.gov/ | SCR_013142 | NHLBI Biorepository | 2026-09-05 06:32:04 | 304 | |||||
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Jackson Laboratory Clinical Knowledgebase Resource Report Resource Website 10+ mentions |
Jackson Laboratory Clinical Knowledgebase (RRID:SCR_014965) | CKB | data or information resource, database | Semi-automated and manually curated database of gene/variant annotations, therapy knowledge, diagnostic/prognostic information, and oncology clinical trials. Users can search CKB via gene, gene variants, drug, drug class, indication, and clinical trials. | cancer, database, knowledgebase, clinical trial, clinical, gene, gene annotation, variant annotation, therapy, diagnosis | Cancer | PMID:26772741 | Available to the research community, For educational and research purposes only, Not intended to be used for medical advice/diagnosis or treatment | SCR_014965 | Jackson CKB | 2026-09-05 06:32:11 | 31 | |||||||
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Attie Lab Diabetes Database Resource Report Resource Website 1+ mentions |
Attie Lab Diabetes Database (RRID:SCR_016639) | data or information resource, database | Interactive database of gene expression and diabetes related clinical phenotypes. Allows to search gene expression in tissues as a function of obesity, strain, and age, in a mouse. | interactive, database, gene, expression, diabetes, related, clinical, phenotype, mouse |
is listed by: OMICtools has parent organization: University of Wisconsin-Madison; Wisconsin; USA |
diabetes | Free, Freely available | SCR_016639 | 2026-09-05 06:32:13 | 3 | |||||||||
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National Death Index Resource Report Resource Website 10+ mentions |
National Death Index (RRID:SCR_016369) | NDI | data or information resource, database | Database of death record information on file in state vital statistics offices. Working with these state offices, the National Center for Health Statistics (NCHS) established the NDI as a resource to aid epidemiologists and other health and medical investigators with their mortality ascertainment activities. | death, mortality, epidemic, statistic, epidemiology, clinical, terminal illness, dead, deceased | has parent organization: Centers for Disease Control and Prevention | CDC | Application required | SCR_016369 | National Mortality Index, Death Index | 2026-09-05 06:32:13 | 21 | |||||||
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Stroke Patient Recovery Research Database (SPReD) Resource Report Resource Website |
Stroke Patient Recovery Research Database (SPReD) (RRID:SCR_005508) | SPReD | data or information resource, database, image | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 28,2025. The Stroke Patient Recovery Research Database (SPReD) initiative creates the infrastructure needed for the collection of a wide range of data related to stroke risk factors and to stroke recovery. It also promotes the analysis and management of large brain and vessel images. A major goal is to create a comprehensive electronic database Stroke Patient Recovery Research Database or SPReD and populate it with patient data, including demographic, biomarker, genetic and proteomic data and imaging data. SPReD will enable us to combine descriptions of our stroke patients from multiple projects that are geographically distributed. We will do this in a uniform fashion in order to enhance our ability to document rates of recovery; to study the effects of vascular risk factors and inflammatory biomarkers; and to use these data to improve their physical and cognitive recovery through innovative intervention programs. This comprehensive database will provide an integrated repository of data with which our researchers will investigate and test original ideas, ultimately leading to knowledge that can be applied clinically to benefit stroke survivors. | stroke, demographic, biomarker, genetic, proteomic, imaging, clinical, brain, vessel, risk factor, recovery | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144609 | SCR_005508 | Stroke Patient Recovery Research Database | 2026-09-05 06:31:30 | 0 | ||||||||
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Integrated Clinical Trials Resource Report Resource Website |
Integrated Clinical Trials (RRID:SCR_005969) | data or information resource, database | A virtual database currently indexing clinical trials databases including EU Clinical Trials Register and Clinicaltrials.gov. | clinical trial, clinical, database |
uses: EU Clinical Trials Register uses: ClinicalTrials.gov is used by: NIF Data Federation is used by: Aging Portal has parent organization: Integrated |
Data are licensed by their respective owners, Use and distribution is subject to the Terms of Use by the original resource | nlx_151342 | https://legacy.neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-5 http://neuinfo.org/nif/nifgwt.html?query=nlx_151342, https://neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_151342-1, https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-5 | SCR_005969 | Integrated Clinical Trials View, NIF Clinical Trials, Integrated CT, Integrated Clinical Trial, NIF Integrated Clinical Trials | 2026-09-05 06:31:32 | 0 | |||||||
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NeuroLogica Blog Resource Report Resource Website 1+ mentions |
NeuroLogica Blog (RRID:SCR_006229) | NeuroLogica | blog, data or information resource, narrative resource | A blog by the accomplished Yale Neurologist Steven Novella, MD, covering news and issues in neuroscience, but also general science, scientific skepticism, philosophy of science, critical thinking, and the intersection of science with the media and society. Dr. Novella is an academic clinical neurologist at Yale University School of Medicine. He is the president and co-founder of the New England Skeptical Society. He is the host and producer of the popular weekly science podcast, The Skeptics'' Guide to the Universe. He is also a senior fellow and Director of Science-Based Medicine at the James Randi Educational Foundation (JREF), a fellow of the Committee for Skeptical Inquiry (CSI) and a founding fellow of the Institute for Science in Medicine. Dr. Novella also contributes every Sunday to The Rogues Gallery, the official blog of the SGU, every Monday to SkepticBlog, and every Wednesday to Science-Based Medicine, a blog dedicated to issues of science and medicine. | neuroscience, skepticism, critical thinking, academic, clinical, neurologist, neurology, autism, pseudoscience | nlx_151807 | SCR_006229 | NeuroLogica Blog - Your Daily Fix of Neuroscience Skepticism and Critical Thinking, NeuroLogicaBlog | 2026-09-05 06:31:34 | 5 | |||||||||
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SHRINE Resource Report Resource Website 1+ mentions |
SHRINE (RRID:SCR_006293) | SHRINE | software application, software resource, source code | Software providing a scalable query and aggregation mechanism that enables federated queries across many independently operated patient databases. This platform enables clinical researchers to solve the problem of identifying sufficient numbers of patients to include in their studies by querying across distributed hospital electronic medical record systems. Through the use of a federated network protocol, SHRINE allows investigators to see limited data about patients meeting their study criteria without compromising patient privacy. This software should greatly enable population-based research, assessment of potential clinical trials cohorts, and hypothesis formation for followup study by combining the EHR assets across the hospital system. In order to obtain the maximum number of cases representing the study population, it is useful to aggregate patient facts across as many sites as possible. Cutting across institutional boundaries necessitates that each hospital IRB remain in control, and that their local authority is recognized for each and every request for patient data. The independence, ownership, and legal responsibilities of hospitals predetermines a decentralized technical approach, such as a federated query over locally controlled databases. The application comes with the SHRINE Core Ontology but it can be used with any ontology, even one that is disease specific. The Core Ontology is designed to enable the widest range of studies possible using facts gathered in the EMR during routine patient care. SHRINE allows multiple ontologies to be used for different research purposes on the same installed systems. | software network, clinical database, data sharing, clinical, medical record, federated, platform, network |
is related to: i2b2 Cross-Institutional Clinical Translational Research project is related to: i2b2 Research Data Warehouse has parent organization: Harvard Medical School; Massachusetts; USA |
Informatics for Integrating Biology and the Bedside ; NLM 5 U54 LM008748; NCRR 1 UL1 RR025758-01 |
PMID:19567788 | Available under a BSD3 Open unspecified license Software license. | nlx_151949 | SCR_006293 | Shared Health Research Informatics NEtwork | 2026-09-05 06:31:34 | 8 | |||||
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Moss Aphasia Psycholinguistics Project Database Resource Report Resource Website 1+ mentions |
Moss Aphasia Psycholinguistics Project Database (RRID:SCR_006265) | MAPPD | data or information resource, database | A database of experimental behavioral data from > 170 aphasia patients who exhibited language impairments secondary to chronic left hemisphere stroke. The core of the database is individual-trial performance data from picture naming. Picture naming is a primary test of lexical processing. The task taps a critical juncture in the language system because naming mediates between high-level conceptual and syntactic processing and low-level phonological processing. Difficulty in this task is present to varying degrees in nearly all aphasic individuals. This site allows researchers to search through naming data from over 170 patients. Searches can narrow in on data subsets based on patient characteristics (e.g. time since aphasia onset, clinical diagnosis), stimulus characteristics (e.g. semantic category, lexical frequency) and task performance (e.g. error type). The data available on this site can be used to test hypotheses about naming impairment and aphasic impairment generally. Once the basic analysis tools of the site are exhausted, users can export the raw data for further analysis and visualization. The web database represents years of data collection. Most were recruited to the research program at Moss Rehabilitation Research Institute (MRRI). | language impairment, adult human, picture naming, lexical processing, clinical, diagnosis, onset, speech, language, psycholinguistic, naming task, brain injury, left hemisphere | Aphasia, Stroke | Moss Rehabilitation Research Institute ; NIDCD RO1DC000191 |
PMID:21714742 | Account required | nlx_151858 | SCR_006265 | 2026-09-05 06:31:34 | 4 | ||||||
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GeneReviews Resource Report Resource Website 100+ mentions |
GeneReviews (RRID:SCR_006560) | GeneReviews | data or information resource, database | Provides clinically relevant and medically actionable information for inherited conditions in standardized journal-style format, covering diagnosis, management, and genetic counseling for patients and their families. Searchable book of expert-authored, peer-reviewed disease descriptions presented in standardized format and focused on clinically relevant and medically actionable information on diagnosis, management, and genetic counseling of patients and families with specific inherited conditions. | genetics, disease, clinical, diagnosis, management, genetic counseling, gene, chromosomal locus, phenotype, allele, locus, mutation |
is used by: NIF Data Federation is listed by: OMICtools has parent organization: NCBI has parent organization: University of Washington; Seattle; USA |
Inherited disease | PMID:20301295 | Acknowledgement required, Protected by copyright | OMICS_00269 | SCR_006560 | 2026-09-05 06:31:35 | 127 | ||||||
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EMBASE Resource Report Resource Website 10000+ mentions |
EMBASE (RRID:SCR_001650) | Embase | data or information resource, database | Comprehensive international bibliographic biomedical database that enables users to track and retrieve precise information on drugs and diseases from pre-clinical studies to searches on critical toxicological information. It contains bibliographic records with citations, abstracts and indexing derived from biomedical articles in peer reviewed journals, and is especially strong in its coverage of drug and pharmaceutical research. Embase can help with everything from clinical trials research to pharmacovigilance and is updated online daily and weekly. Its broad biomedical scope covers the following areas: * Drug therapy and research, including pharmaceutics, pharmacology and toxicology * Clinical and experimental (human) medicine * Basic biological science relevant to human medicine * Biotechnology and biomedical engineering, including medical devices * Health policy and management, including pharmacoeconomics * Public, occupational and environmental health, including pollution control * Veterinary science, dentistry, and nursing The Embase Application Programming Interface supports export, RSS feeds, and integration services, making it possible to share data with a wide range of systems. | biomedical, drug, disease, regulatory requirement, drug research, pharmacology, pharmaceutics, toxicology, clinical, experimental medicine, health policy, management, public health, occupational health, environmental health, drug dependence, drug abuse, psychiatry, forensic medicine, biomedical engineering, biomedical instrumentation, nursing, dentistry, veterinary medicine, psychology, alternative medicine, clinical trial, pharmacovigilance, pharmacology, drug safety, adverse drug reaction, chemical, bibliography, FASEB list | is related to: Cochrane Central Register of Controlled Trials | Restricted | nlx_153929 | SCR_001650 | EMBASE: Excerpta Medica, Excerpta Medica Database, Embase: Biomedical Database, EMBASE (Excerpta Medica Database) | 2026-09-05 06:31:14 | 65027 | |||||||
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Childhood Liver Disease Research and Education Network Resource Report Resource Website 1+ mentions |
Childhood Liver Disease Research and Education Network (RRID:SCR_001497) | ChiLDREN | biomaterial supply resource, material resource, tissue bank | Database of clinical information and serum and tissue samples from children across the United States and Canada with Biliary Atresia, Idiopathic Neonatal Hepatitis, Cystic Fibrosis Liver Disease, Alagille Syndrome, Alpha-1 Antitrypsin Deficiency, Bile Acid Synthesis Defects, Mitochondrial Hepatopathies, and Progressive Familial Intrahepatic Cholestasis in order to facilitate research and to perform clinical, epidemiological, and therapeutic trials in these important pediatric liver diseases. Three NIDDK-funded consortia, Biliary Atresia Research Consortium (BARC), Cholestatic Liver Disease Consortium (CLiC), and the Cystic Fibrosis Liver Disease (CFLD) Network were consolidated to form ChiLDREN. Most of the ChiLDREN studies are natural history studies aimed at acquiring information and data that will provide a better understanding of these rare conditions. Participants will be asked to allow study personnel to obtain information from medical records and an interview, and to collect blood, urine, and tissue samples when clinically indicated, in order to understand the causes of these diseases and to improve the diagnosis and treatment of children with these diseases. All of the information obtained in these studies is confidential and no names or identifying information are used in the study. | child, clinical, epidemiology, therapy, pediatric, young human, rare disease, diagnostics, treatment, infant, liver, longitudinal, gall bladder, bile duct, small intestine, colon, lymph node, blood, urine, tissue, serum, plasma, dna, bile, liver tissue, gall bladder tissue, bile duct tissue, small intestine tissue, colon tissue, lymph node tissue |
is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Information Network (dkNET) has parent organization: University of Michigan; Ann Arbor; USA |
Biliary Atresia, Idiopathic Neonatal Hepatitis, Cystic Fibrosis Liver Disease, Alagille Syndrome, Alpha-1 Antitrypsin Deficiency, Bile Acid Synthesis Defect, Mitochondrial Hepatopathy, Progressive Familial Intrahepatic Cholestasis, Liver disease, Metabolism defect, Cholestasis | NIDDK 2U01DK062456 | nlx_152755 | SCR_001497 | Childhood Liver Disease Research and Education Network (ChiLDREN) | 2026-09-05 06:31:14 | 3 | ||||||
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g.BSanalyze Resource Report Resource Website 1+ mentions |
g.BSanalyze (RRID:SCR_009625) | g.BSanalyze | data processing software, software application, software resource | An interactive environment for multimodal biosignal data processing and analysis in the fields of clinical research and life sciences. It is the most comprehensive package to analyze non-invasive and invasive brain-, heart- and muscle-functions and dysfunctions. It includes many functions such as support vector machines, event-related ECG, support for P300 and SSVEP/SSSEP BCIs, zero class detection for BCIs, compressed spectral array, minimum energy, and more! g.BSanalyze consists of a base version for data import, visualization, transformation and pre-processing and has several dedicated toolboxes. The package comes with many sample biosignal data-sets, including P300, SSVEP, motor imagery, CSP BCIs, Tilt-Table, EPs, multi-unit activity, CFM, and ERD/ERS. | ascii, eeg, meg, matlab, microsoft, windows, clinical | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Other/Commercial license License | nlx_155850 | http://www.nitrc.org/projects/gbsanalyze | SCR_009625 | 2026-09-05 06:30:46 | 2 | |||||||
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NIH Roadmap Resource Report Resource Website 1+ mentions |
NIH Roadmap (RRID:SCR_011465) | RMOD, RM | data or information resource, government granting agency, portal, project portal | Collection of far reaching initiatives designed to transform research capabilities and improve translation of research into practice. Program consists of three major themes: new pathways to discovery, research teams of future, and reengineering clinical research enterprise. | Initiative, transform, research, discovery, future, clinical, grant |
is used by: Deep Blue Epigenomic Data Server has parent organization: National Institutes of Health |
PMID:23584747 | nlx_inv_1005081 | https://www.niehs.nih.gov/funding/grants/announcements/roadmap/index.cfm, https://science.sciencemag.org/content/345/6194/274 | http://nihroadmap.nih.gov/grants/ | SCR_011465 | NIH roadmap initiative office of the director | 2026-09-05 06:30:47 | 1 | |||||
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Educational Resources in Neuroscience Resource Report Resource Website |
Educational Resources in Neuroscience (RRID:SCR_000169) | ERIN | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 23,2022. A database that lists, reviews, and rates resources for teaching neuroscience at the graduate and undergraduate level. | education, neuroscience, training material, clinical |
is used by: NIF Data Federation lists: UCSC Genome Browser lists: ReMoto lists: Neurofly lists: Free Statistical Software is related to: ReMoto is related to: Neurofly is related to: Free Statistical Software has parent organization: Society for Neuroscience |
NSF DUE-1043553 | PMID:26240519 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_143786 | SCR_000169 | ERIN: Educational Resources In Neuroscience, ERIN Resources | 2026-09-05 06:32:20 | 0 | |||||
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The Cancer Genome Atlas Resource Report Resource Website 5000+ mentions |
The Cancer Genome Atlas (RRID:SCR_003193) | TCGA | biomaterial supply resource, material resource | Project exploring the spectrum of genomic changes involved in more than 20 types of human cancer that provides a platform for researchers to search, download, and analyze data sets generated. As a pilot project it confirmed that an atlas of changes could be created for specific cancer types. It also showed that a national network of research and technology teams working on distinct but related projects could pool the results of their efforts, create an economy of scale and develop an infrastructure for making the data publicly accessible. Its success committed resources to collect and characterize more than 20 additional tumor types. Components of the TCGA Research Network: * Biospecimen Core Resource (BCR); Tissue samples are carefully cataloged, processed, checked for quality and stored, complete with important medical information about the patient. * Genome Characterization Centers (GCCs); Several technologies will be used to analyze genomic changes involved in cancer. The genomic changes that are identified will be further studied by the Genome Sequencing Centers. * Genome Sequencing Centers (GSCs); High-throughput Genome Sequencing Centers will identify the changes in DNA sequences that are associated with specific types of cancer. * Proteome Characterization Centers (PCCs); The centers, a component of NCI's Clinical Proteomic Tumor Analysis Consortium, will ascertain and analyze the total proteomic content of a subset of TCGA samples. * Data Coordinating Center (DCC); The information that is generated by TCGA will be centrally managed at the DCC and entered into the TCGA Data Portal and Cancer Genomics Hub as it becomes available. Centralization of data facilitates data transfer between the network and the research community, and makes data analysis more efficient. The DCC manages the TCGA Data Portal. * Cancer Genomics Hub (CGHub); Lower level sequence data will be deposited into a secure repository. This database stores cancer genome sequences and alignments. * Genome Data Analysis Centers (GDACs) - Immense amounts of data from array and second-generation sequencing technologies must be integrated across thousands of samples. These centers will provide novel informatics tools to the entire research community to facilitate broader use of TCGA data. TCGA is actively developing a network of collaborators who are able to provide samples that are collected retrospectively (tissues that had already been collected and stored) or prospectively (tissues that will be collected in the future). | genome, genome sequencing, breast, central nervous system, endocrine, gastrointestinal, gynecologic, head, neck, hematologic, skin, soft tissue, thoracic, urologic, clinical, genomic characterization, analysis, tumor genome, demographic, gene expression, copy number alteration, epigenetic, dna sequence, exome, snp, methylation, mrna, mirna, FASEB list |
is used by: Mutation Annotation and Genomic Interpretation is used by: BioXpress is used by: cancerRxTissue is listed by: One Mind Biospecimen Bank Listing is related to: Cancer3D is related to: Cancer Research Data Commons is related to: CancerMIRNome is related to: Broad Institute Genomics Platform has parent organization: National Cancer Institute works with: FireBrowse |
Cancer, Tumor, Normal, Breast cancer, Central Nervous System cancer, Endocrine cancer, Gastrointestinal cancer, Gynecologic cancer, Head cancer, Neck cancer, Hematologic cancer, Skin cancer, Soft tissue cancer, Thoracic cancer, Urologic cancer | NCI 261200800001E-12-0-1 | nlx_156913 | SCR_003193 | Cancer Genome Atlas | 2026-09-05 06:32:29 | 7443 | ||||||
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National Mesothelioma Virtual Bank Resource Report Resource Website 1+ mentions |
National Mesothelioma Virtual Bank (RRID:SCR_003438) | NMVB | biomaterial supply resource, material resource | A virtual biospecimen registry designed to support and facilitate basic science, clinical, and translational research that will advance understanding of mesothelioma pathophysiology with the goal of expediting the discovery of preventive measures, novel therapeutic interventions, and ultimately, cures for mesothelioma. The NMVB resource is designed to provide mesothelioma tissue samples with high-quality and well-characterized multimodal annotated data to researchers. The NMVB team strongly believes that progress in translational and clinical research - in cancer as well as other disease areas - depends on the ability of researchers to access high-quality tissue that is associated with meaningful annotation. MVB database version 3.0 has been released that provides researchers real-time access to demographic, epidemiologic, pathologic, genotype, and follow-up data associated with biospecimens at no cost. Researchers interested in utilizing NMVB samples for their research may submit an application. All researchers (academic or commercial, United States or foreign) may apply for NMVB tissue specimens. NMVB currently has 966 annotated cases and 1198 biospecimens including: * Paraffin Embedded Tissue * Fresh Frozen Tissue * Blood and DNA Samples The NMVB also has developed mesothelioma tissue microarrays (TMAs) with associated multimodal data annotation. Additional TMAs will be available shortly. | epidemiologic, biospecimen, clinical, demographic, genotype, pathologic, pathophysiology, preventive, specimen, therapeutic, tissue, translational, mesothelioma, paraffin-embedded tissue, fresh frozen tissue, blood, dna, paraffin, frozen, fresh frozen, glass slide, biopsy, resected, metastatic, lymph node, mesothelioma, cancer, lung cancer, rare disease, tissue bank, asbestos, epidemiology, pathology, biospecimen management |
is listed by: One Mind Biospecimen Bank Listing is listed by: Biositemaps has parent organization: University of Pittsburgh; Pennsylvania; USA |
Mesothelioma, Metastasis | National Institute for Occupational Safety and Health | PMID:26316942 | Public, Application required | nif-0000-33179 | SCR_003438 | Mesothelioma Virtual Bank, MVB | 2026-09-05 06:32:29 | 3 |
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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
