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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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EpiProfile Resource Report Resource Website |
EpiProfile (RRID:SCR_028224) | software application, software resource, source code | Software tool for processing Epi-Proteomics mass spectrometry data. Discriminates isobaric histone peptides using distinguishing fragment ions in their tandem mass spectra and extracts the chromatographic area under the curve using previous knowledge about peptide retention time. Nanoflow liquid chromatography coupled with high resolution tandem mass spectrometry-based quantification tool for histone peptides, which can also be adapted to analyze nonhistone protein samples. EpiProfile 2.0 is extended version of v1.0 for enhanced quantification of histone peptides based on LC-MS/MS analysis. | LC-MS/MS analysis, peptide, quantification, histone, quantification of histone peptides, quantification of histone peptides based on LC-MS/MS analysis, mass spectrometry data, | NCATS TL1TR001880; NCI CA196539; NIAID AI118891; NIGMS GM110174; NIGMS T32GM008275; UPenn Epigenetics Institute |
PMID:25805797 PMID:29790754 |
Free, Available for download, Freely available | SCR_028224 | EpiProfile 2.0 | 2026-09-12 01:05:46 | 0 | ||||||||
|
HiTAIC Resource Report Resource Website |
HiTAIC (RRID:SCR_028181) | data access protocol, software resource, web service | Web-based application to trace tumor tissue of origin in primary and metastasized cancers. | Tumor classifier, trace tumor tissue of origin, primary and metastasized cancers, | NCI P30CA023108; NCI R01CA216265; NCI R01CA253976; NCI R01CA275974; NIGMS P20GM104416 |
PMID:37089814 | Free, Freely available | SCR_028181 | Hierarchical Tumor Artificial Intelligence Classifier | 2026-09-12 01:05:45 | 0 | ||||||||
|
ComBat-seq Resource Report Resource Website |
ComBat-seq (RRID:SCR_028999) | software application, software resource, source code | Software batch effect adjustment tool for bulk RNA-seq count data. | batch correction, batch effect adjustment, bulk RNA-seq count data, | NCI 4P30CA006516; NCI 5U01 CA220413; NIGMS 5R01GM127430; NSF |
PMID:33015620 | Free, Available for download, Freely available | SCR_028999 | 2026-09-16 10:46:10 | 0 |
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