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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
http://vorlon.case.edu/~jxl175/haplotyping.html
THIS RESOURCE IS NO LONGER IN SERVICE.Documented on August 23,2022. Software application for inferring haplotypes from genotypes on pedigree data (entry from Genetic Analysis Software)
Proper citation: PEDPHASE (RRID:SCR_000843) Copy
http://animalgene.umn.edu/locusmap/index.html
Software package designed for rapid linkage analysis and map construction of loci with a variety of inheritance modes. (entry from Genetic Analysis Software)
Proper citation: LOCUSMAP (RRID:SCR_000840) Copy
http://www-genome.wi.mit.edu/ftp/pub/software/rhmapper/
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 30, 2022. An interactive software program for radiation hybrid mapping (entry from Genetic Analysis Software)
Proper citation: RHMAPPER (RRID:SCR_000845) Copy
http://www.people.fas.harvard.edu/~junliu/genotype/
Software application (entry from Genetic Analysis Software)
Proper citation: GS-EM (RRID:SCR_003992) Copy
http://www.geneticepi.com/Research/software/software.html
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application (entry from Genetic Analysis Software).
Proper citation: MILD (RRID:SCR_003335) Copy
http://linkage.rockefeller.edu/pawe3d/
Software application (entry from Genetic Analysis Software)
Proper citation: PAWE-3D (RRID:SCR_003326) Copy
http://gaow.github.io/genetic-analysis-software/l-1.html#ldsupport
Software application (entry from Genetic Analysis Software)
Proper citation: LDSUPPORT (RRID:SCR_007036) Copy
https://www.jurgott.org/linkage/LinkagePC.html
Standard software package for genetic linkage called LINKAGE. Genetic linkage analysis is statistical technique used to map genes and find approximate location of disease genes.
Proper citation: LINKAGE (RRID:SCR_007033) Copy
http://www.wesbarris.com/mapcreator/
Software application to create gene maps using either radiation hybrid data or linkage data (entry from Genetic Analysis Software)
Proper citation: MAPCREATOR (RRID:SCR_008001) Copy
http://www.sph.umich.edu/csg/abecasis/GOLD/
Software package that provides a graphical summary of linkage disequilibrium in human genetic data. The graphical summary is well suited to the analysis of dense genetic maps, where contingency tables are cumbersome to interpret. An interface to the Simwalk2 application allows for the analysis of family data.
Proper citation: Graphical Overview of Linkage Disequilibrium (RRID:SCR_007151) Copy
http://bios.ugr.es/BMapBuilder/
Software application (entry from Genetic Analysis Software)
Proper citation: BMAPBUILDER (RRID:SCR_007264) Copy
http://gaow.github.io/genetic-analysis-software/l/linkage---ceph/
Software application (entry from Genetic Analysis Software)
Proper citation: LINKAGE - CEPH (RRID:SCR_007048) Copy
http://compgen.rutgers.edu/multimap.shtml
Software program for automated construction of genetic maps (entry from Genetic Analysis Software)
Proper citation: MULTIMAP (RRID:SCR_007168) Copy
https://github.com/gaow/genetic-analysis-software/blob/master/pages/MAPMAKER%26SIBS.md
THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Data analysis software for complete multipoint analysis.
Proper citation: MAPMAKER/SIBS (RRID:SCR_008012) Copy
http://genetics.agrsci.dk/~bg/popgen/
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Software application that calculates a number of different genetic identities, phylogeny reconstructing measures, and distance reconstructing measures (entry from Genetic Analysis Software)
Proper citation: POPDIST (RRID:SCR_004904) Copy
http://wpicr.wpic.pitt.edu/WPICCompGen/
Software application (entry from Genetic Analysis Software)
Proper citation: R/SPECTRAL-GEM (RRID:SCR_007414) Copy
http://www.uni-bonn.de/~umt70e/soft.htm
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application for calculation of the restricted likelihood-ratio affected sib-pair test for linkage allowing for imprinting (entry from Genetic Analysis Software)
Proper citation: ILR (RRID:SCR_007895) Copy
THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 15, 2017. Software application (entry from Genetic Analysis Software)
Proper citation: S (RRID:SCR_007646) Copy
http://www.chgb.org.cn/lda/lda.htm
THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A Java program for analyzing the pairwise linkage disequilibrium.
Proper citation: LDA (RRID:SCR_007527) Copy
http://genome.sph.umich.edu/wiki/RvTests
Software application (entry from Genetic Analysis Software)
Proper citation: RVTESTS (RRID:SCR_007639) Copy
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