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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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CATALYSTLite Resource Report Resource Website |
CATALYSTLite (RRID:SCR_017126) | analysis service resource, data analysis service, production service resource, service resource | Software tool as interactive Shiny web application that provides user interface to mass cytometry data processing pipeline implemented in CATALYST R Bioconductor package. | interactive, Shiny, website, application, interface, mass, cytometry, data, processing, pipeline |
is used by: CATALYST is related to: Bioconductor has parent organization: University of Zurich; Zurich; Switzerland |
Free, Freely available | SCR_017126 | 2026-08-29 11:30:24 | 0 | ||||||||||
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Genes, Genome Features and Maps Resource Report Resource Website 1+ mentions |
Genes, Genome Features and Maps (RRID:SCR_017524) | data or information resource, database | Searchable database of mouse genes, DNA segments, cytogenetic markers and QTLs. MGI provides access to integrated data on mouse genes and genome features, from sequences and genomic maps to gene expression and disease models. | Data, mouse, gene, DNA, segment, cytogenetic, marker, MGI, genome, feature, sequenced, genomic, map, expression, disease, model | Free, Freely available | SCR_017524 | 2026-08-29 11:30:34 | 6 | |||||||||||
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Phenotypes and Mutant Alleles Resource Report Resource Website 10+ mentions |
Phenotypes and Mutant Alleles (RRID:SCR_017523) | data or information resource, database, service resource | Enables comparative phenotype analysis, searches for human disease models, and hypothesis generation by providing access to spontaneous, induced, and genetically engineered mutations and their strain-specific phenotypes. | MGI, phenotype, human, disease, analysis, model, genetically, engineered, mutation, strain, specific, phenotype, data | has parent organization: Mouse Genome Informatics (MGI) | Free, Freely available | SCR_017523 | Phenotypes, Alleles & Disease Models | 2026-08-29 11:30:25 | 13 | |||||||||
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TransmiR Resource Report Resource Website 100+ mentions |
TransmiR (RRID:SCR_017499) | data or information resource, database | Collection of transcription factor microRNA regulations. TransmiR v2.0 manually curated TF-miRNA regulations from publications during 2013-2017 and included ChIP-seq-derived TF-miRNA regulation data. | Transcription, factor, miRNA, regulation, manually, curated, TF-miRNA, ChIPseq, derived, TF-miRNA, data, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian has parent organization: Peking University; Beijing; China |
Restricted | biotools:transmir | https://bio.tools/transmir/ | SCR_017499 | TransmiR v2.0 | 2026-08-29 11:30:25 | 123 | |||||||
|
Predomics Resource Report Resource Website 1+ mentions |
Predomics (RRID:SCR_017415) | software application, software resource, source code | Software package for metagenomics data. Discovers accurate predictive signatures and provides unprecedented interpretability. Package contains three methods for suppervised learning based on ternary coefficients. Used to discover classification models for quantitative metagenomics data. | Metagenomic, data, discover, predictive, signature, unprecedented, interpretability, supervised, learning, ternary, coefficient | Assistance Publique-Hôpitaux de Paris Contrat d’interface chercheurs 2015-2018; EU-FP7 HEALTH-F4-2012-305312; French National Agency |
DOI:10.1101/409144 | Free, Available for download, Freely available | SCR_017415 | 2026-08-29 11:30:34 | 1 | |||||||||
|
Crossref EventData Resource Report Resource Website 1+ mentions |
Crossref EventData (RRID:SCR_016281) | data or information resource, database | Database of events about articles that is run by CrossRef. It allows users to view social media mentions, news publication references, annotations, and more. | cross, reference, event, data, mention, social, media | has parent organization: CrossRef | Freely available | SCR_016281 | Event Data, EventData | 2026-08-29 11:30:45 | 4 | |||||||||
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miRanda Resource Report Resource Website 100+ mentions |
miRanda (RRID:SCR_017496) | data or information resource, database, service resource | Comprehensive resource of microRNA target predictions and expression profiles. Used for whole genome prediction of miRNA target genes. For each miRNA, target genes are selected on basis of sequence complementarity using position weighted local alignment algorithm, free energies of RNA-RNA duplexes, and conservation of target sites in related genomes. Provides information about set of genes potentially regulated by particular microRNA, co-occurrence of predicted target sites for multiple microRNAs in mRNA and microRNA expression profiles in tissues. Users are allowed to customize algorithm, numerical parameters, and position-specific rules., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | Whole, genome, prediction, miRNA, target, gene, expression, profile, data, FASEB list | is listed by: SoftCite | Alfred W. Bressler Scholars Endowment Fund ; Atlantic Philanthropies ; NIGMS |
PMID:18158296 | THIS RESOURCE IS NO LONGER IN SERVICE | http://www.microrna.org/microrna/home.do | SCR_017496 | MicroRNA.org. microrna.org | 2026-08-29 11:30:34 | 281 | ||||||
|
EVmiRNA Resource Report Resource Website 1+ mentions |
EVmiRNA (RRID:SCR_018795) | data or information resource, database | Collection of comprehensive miRNA expression profiles in extracellular vesicles from tissues. Includes miRNA expression profiles, miRNA regulated pathways, miRNA function, miRNA related drugs and publications to support miRNA biomarker discovery. | miRNA, miRNA expression profile, extracellular vesicle, tissue, miRNA regulated pathway, miRNA function, drug, publication, miRNA biomarker, data | China Postdoctoral Science Foundation ; National Key Research and Development Program of China ; National Natural Science Foundation of China |
PMID:30335161 | Free, Freely available | SCR_018795 | Extracellular Vesicles miRNA Database | 2026-08-29 11:30:27 | 2 | ||||||||
|
LPSN Database Resource Report Resource Website 100+ mentions |
LPSN Database (RRID:SCR_018151) | data or information resource, database, service resource | Database lists names of prokaryotes that have been validly published in International Journal of Systematic and Evolutionary Microbiology directly or by inclusion in Validation List, under Rules of International Code of Nomenclature of Bacteria. Has classification of prokaryotes and information on prokaryotic nomenclature and culture collections. | Collection, published Prokaryote name, International Journal of Systematic and Evolutionary Microbiology, prokaryotes classification, prokaryotes nomenclature, culture collection, data, FASEB list | DOI:10.1093/nar/gkt1111 | Free, Freely available | SCR_018151 | List of Prokaryotic names with Standing in Nomenclature Database | 2026-08-29 11:30:35 | 142 | |||||||||
|
IST Online Resource Report Resource Website 10+ mentions |
IST Online (RRID:SCR_018794) | data or information resource, database, service resource | Database by Medisapiens Ltd. as fully integrated and annotated human gene expression data source. All genes are comparable across all samples. Provides data analysis options using database of human transcriptome. | Human gene, gene expression data, data, gene expression, gene, human transcriptome, Medisapiens Ltd. | Restricted | SCR_018794 | 2026-08-29 11:30:27 | 16 | |||||||||||
|
Viral Integrated Structural Evolution Dynamic Database Resource Report Resource Website 1+ mentions |
Viral Integrated Structural Evolution Dynamic Database (RRID:SCR_018793) | VIStEDD | data or information resource, database | Database of SARS-CoV-2 and other viruses. Integrates structural and dynamic insights with viral evolution for proteins coded by virus. Each virus within database has workflow performed on each protein. Workflow consists of protein modeling, molecular dynamic simulations, evolutionary analysis, and mapping of protein-protein interactions. On page for each protein is link to individual protein data folder system, video of protein rotating with conservation, details of protein function, widget to purchase 3D print of protein at cost of production, amino acid movement from molecular dynamic simulations, and table of data for each amino acid of protein. | Virus, SARS-CoV-2, COVID-19, proteins coded by virus, viral evolution, protein, data, amino acid, protein modeling, molecular dynamic simulation, evolutionary analysis, protein-protein interaction, protein- protein interaction mapping, protein data folder system, rotating protein video, protein function, molecular dynamic simulation | has parent organization: Michigan State University; Michigan; USA | COVID-19 | NIEHS K01 ES025435; NIGMS R01 GM108618 |
PMID:32511397 | Free, Freely available | SCR_018793 | Viral Integrated Structural Evolution Dynamic Database, SARS-CoV-2 dynamicome database | 2026-08-29 11:30:47 | 3 | |||||
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C. elegans RNAi Collection (Ahringer) Resource Report Resource Website 10+ mentions |
C. elegans RNAi Collection (Ahringer) (RRID:SCR_017064) | data or information resource, database | C. elegans RNAi feeding library distributed by Source BioScience Ltd. Designed for genome wide study of gene function in C. elegans through loss of function studies. | Source BioScience Ltd, data, collection, bacterial, strain, Caenorhabditis elegans, RNA, interference, RNAi, gene, function, analysis, feeding, library | has parent organization: University of Cambridge; Cambridge; United Kingdom | Howard Hughes Medical Institute Predoctoral Fellow- ship ; Wellcome Trust Senior Research Fellowship |
PMID:12828945 | Available for purchase | SCR_017064 | 2026-08-29 11:30:46 | 16 | ||||||||
|
Finnish Twin Cohort Study Resource Report Resource Website 1+ mentions |
Finnish Twin Cohort Study (RRID:SCR_017477) | data or information resource, database | Twin panel consists of three nationwide samples of Finnish twin pairs. Major studies include nicotine dependence, eating disorders and brain imaging and alcohol use. | Twin, Finnish, nicotine, dependence, eating, disorder, brain, imaginig, alcohol, data, | has parent organization: University of Helsinki; Helsinki; Finland | Restricted | SCR_017477 | 2026-08-29 11:30:46 | 1 | ||||||||||
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Allen Brain Atlas expression map of Cre and other drivers Resource Report Resource Website 1+ mentions |
Allen Brain Atlas expression map of Cre and other drivers (RRID:SCR_017510) | atlas, data or information resource | Data detailing transgene expression in Cre and other driver lines for adult and developing brain. Experiments include colorimetric in situ hybridization, fluorescent in situ hybridization and other histological methods. Expression maps of transgenic Cre and other driver lines in mice. | Data, image, transgene, expression, Cre, brain, map, mice | has parent organization: Allen Brain Atlas | Free, Freely available | SCR_017510 | Allen Brain Atlas Data Portal Transgenic Characterization | 2026-08-29 11:30:34 | 9 | |||||||||
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OSHA Occupational Chemical Database Resource Report Resource Website 1+ mentions |
OSHA Occupational Chemical Database (RRID:SCR_018203) | data or information resource, database | Chemical inventory for occupational chemical information. Collects information from several government agencies and organizations. Includes information about identification and physical properties, exposure limits, sampling. | OSHA, occupational chemical data, chemical inventory, government, identification and physical property, exposure limit, sampling, chemical reagent, data | Free, Freely available | SCR_018203 | 2026-08-29 11:30:35 | 4 | |||||||||||
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Alberta Diabetes Institute IsletCore database Resource Report Resource Website 1+ mentions |
Alberta Diabetes Institute IsletCore database (RRID:SCR_018566) | data or information resource, database | Collection of data from all pancreatic islet isolations. | Pancreatic islet, data set, image collection, human islet isolation data, human pancreatic islet, data | is related to: University of Alberta; Alberta; Canada | diabetes | Restricted | SCR_018566 | 2026-08-29 11:30:47 | 5 | |||||||||
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VGNC Resource Report Resource Website 10+ mentions |
VGNC (RRID:SCR_017514) | data or information resource, database, service resource | Software resource for vertebrate gene nomenclature. Database of gene symbols. Coordinates with vertebrate nomenclature committees, MGNC (mouse), RGNC (rat), CGNC (chicken), AGNC (Anole green lizard), XNC (Xenopus frog) and ZNC (zebrafish), to ensure genes are named in line with their human homologs. | Vertebrate, gene, nomenclature, data, symbol | is related to: HGNC | NHGRI U24 HG003345; Wellcome Trust |
Free, Freely available | SCR_017514 | Vertebrate Gene Nomenclature Committee | 2026-08-29 11:30:25 | 14 | ||||||||
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Optogenetics Resource Center Resource Report Resource Website 1+ mentions |
Optogenetics Resource Center (RRID:SCR_017513) | data or information resource, database, service resource | Database of different optogenetics resources like hardware, protocols, sequence information. | Optogenetic, data | has parent organization: Stanford University; Stanford; California | Free, Freely available | SCR_017513 | 2026-08-29 11:30:25 | 2 | ||||||||||
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RefLib Resource Report Resource Website |
RefLib (RRID:SCR_018320) | application programming interface, data access protocol, software resource | Reference library processing for JavaScript. Reference library processing for NodeJS. | Reference library processing, Java script, NodeJS, citation, citation record, data | Free, Available for download, Freely available | SCR_018320 | Reflib-Node | 2026-08-29 11:30:47 | 0 | ||||||||||
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miRWalk Resource Report Resource Website 1000+ mentions |
miRWalk (RRID:SCR_016509) | data or information resource, database | Software tool to store the predicted and the experimentally validated microRNA (miRNA)-target interaction pairs. Predictions within the complete sequence of genes of human, mouse, and rat genomes. Integrates a comparative platform of miRNA-binding sites resulting from ten different prediction datasets. | microRNA, target, interaction, pair, binding, site, sequence, gene, data, FASEB list | is listed by: OMICtools | PMID:26226356 | Free, Available for download, Freely available | SCR_016509 | 2026-08-29 11:30:45 | 1741 |
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