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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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National Taiwan University; Taipei; Taiwan Resource Report Resource Website 1+ mentions |
National Taiwan University; Taipei; Taiwan (RRID:SCR_000983) | NTU | university | A national research university in Taipei, Taiwan. The university confers degrees at the undergraduate and graduate level bio-resources and agriculture, electrical engineering and computer science, engineering, law, liberal arts, management, medicine, public health, and the social sciences. | national, research, law, finance, engineering, electrical, medicine, undergraduate, graduate |
is parent organization of: Library for Support Vector Machines is parent organization of: VNTR Locus Database is parent organization of: LIBSVM is parent organization of: TCMGeneDIT is parent organization of: Functional MRI Analysis and Clustering Tools is parent organization of: Oncogenomic Database of Hepatocellular Carcinoma is parent organization of: POINT: Prediction Of INTeractome |
Wikidata:Q32746, nlx_65230, ISNI:0000 0004 0546 0241, grid.19188.39, Crossref funder ID:501100006477 | https://ror.org/05bqach95 | SCR_000983 | 2026-08-29 11:20:40 | 1 | ||||||||
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National University of Singapore; Singapore; Singapore Resource Report Resource Website 1+ mentions |
National University of Singapore; Singapore; Singapore (RRID:SCR_000984) | NUS | university | A public university located in Singapore that has a wide range of faculties and schools, including arts, business, computing, and dentistry. | public, singapore, art, business, computing, dentistry, design, architecture |
is parent organization of: imcalc: SPM batch image calculator is parent organization of: pfSNP is parent organization of: vis: SPM Visualized Statistics toolbox is parent organization of: AllerHunter: Cross-reactive Allergen Prediction Home is parent organization of: GBSA is parent organization of: Yong Loo Lin School of Medicine; Singapore; Singapore is parent organization of: Christopher Hogues Research Lab at the National University of Singapore is parent organization of: MBInfo is parent organization of: Therapeutic Target Database is parent organization of: DART - Drug Adverse Reaction Targets is parent organization of: Kinetic Data of Bio-molecular Interaction is parent organization of: MHC-Peptide Interaction Database is parent organization of: Xpro is parent organization of: Computed Ligand Binding Energy is parent organization of: Drosophila melanogaster Exon Database is parent organization of: Drug ADME Associated Protein Database is parent organization of: Trauma Screening Questionaire is parent organization of: Mixed Effect Model of Genetic-Set and Environment Interaction |
nlx_67014 | SCR_000984 | National University of Singapore | 2026-08-29 11:20:54 | 2 | ||||||||
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BWH Surgical Planning Laboratory Resource Report Resource Website |
BWH Surgical Planning Laboratory (RRID:SCR_000869) | BWH SPL | group | A laboratory dedicated to advancing health care through utilizing computation and imaging to new areas of medicine. | computation, imaging, medicine, research, publication | is listed by: Eagle I | nlx_156146 | http://harvard.eagle-i.net/i/0000012c-745f-93d3-c437-ff0b80000000 | SCR_000869 | 2026-08-29 11:20:31 | 0 | ||||||||
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NeuroVigil Resource Report Resource Website |
NeuroVigil (RRID:SCR_000866) | commercial organization | Commercial company that produces simple EEG measurement devices compatible with phones.Develops proprietary non invasive brain monitors and advanced machine learning algorithms to detect constellation of biomarkers of pathologies in asymptomatic individuals, such as people with neurodegeneration, adverse drug side effects or brain cancer, and to ascertain intent including individuals who cannot otherwise communicate. | brainwaves, brain waves, eeg | nlx_15581 | SCR_000866 | NeuroVigil: Revolutionizing Brain Analysis | 2026-08-29 11:20:37 | 0 | ||||||||||
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CryptoBase Resource Report Resource Website 1+ mentions |
CryptoBase (RRID:SCR_000780) | software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented July 19, 2016. This site is built and maintained by the Madhani Lab, Dept. of Biochemistry and Biophysics at the University of California, San Francisco | has parent organization: University of California at San Francisco; California; USA | Herb and Marion Sandler Foundation | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30395 | http://archive.is/YgVX4 | SCR_000780 | 2026-08-29 11:20:31 | 2 | ||||||||
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FileMaker Resource Report Resource Website 50+ mentions |
FileMaker (RRID:SCR_000783) | software resource | A database software for managing, analyzing and sharing information across multiple devices and people, both online and offline. | file, maker, information, sharing, analyze, sync, devices, windows, apple, ios, FASEB list | Restricted | nif-0000-30436 | SCR_000783 | FileMaker | 2026-08-29 11:20:31 | 65 | |||||||||
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GlycoWorkbench Resource Report Resource Website 1+ mentions |
GlycoWorkbench (RRID:SCR_000782) | software resource | A suite of software tools designed for the rapid drawing of glycan structures and for assisting the process of structure determination from mass spectrometry data. | rapid drawing of glycan structures |
is listed by: OMICtools has parent organization: Google Code |
PMID:23109548 | Free, Available for download, Freely available | OMICS_05691 | SCR_000782 | 2026-08-29 11:20:48 | 6 | ||||||||
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Medscape Education - Medscape CME/CE Resource Report Resource Website |
Medscape Education - Medscape CME/CE (RRID:SCR_000936) | continuing medical education, data or information resource, portal, topical portal, training resource | A portal with listings of continuing medical education opportunities such as radiology, pediatrics, and HIV/AIDS specializations. | education, medical, continuing, portal, information | Public | nlx_91735 | SCR_000936 | MedscapeCME, Medscape Education Medscape CME/CE, Medscape CME/CE | 2026-08-29 11:20:32 | 0 | |||||||||
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Google Project Hosting Resource Report Resource Website 1+ mentions |
Google Project Hosting (RRID:SCR_000811) | Google Project Hosting | data or information resource, organization portal, portal, software application, software development environment, software development tool, software repository, software resource, source code | Project Hosting on Google Code provides a free collaborative development environment for open source projects. | project |
has parent organization: Google Code is parent organization of: Biopieces is parent organization of: PIDO - Primary Immunodeficiency Disease Ontology is parent organization of: OWLTools is parent organization of: Neuroglancer |
Open unspecified license | nlx_149266 | SCR_000811 | Project Hosting on Google Code | 2026-08-29 11:20:37 | 1 | |||||||
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American Federation for Aging Research Resource Report Resource Website 1+ mentions |
American Federation for Aging Research (RRID:SCR_000806) | AFAR | non profit organization | A non-profit organization that supports the advance of healthy aging through biomedical research. | funding resource, healthy aging, late adult human, biotechnology | Aging | Crossref funder ID: 100005366, Wikidata: Q4743745, nlx_144115, grid.427612.4, ISNI: 0000 0001 0395 8845 | https://ror.org/000r61a05 | SCR_000806 | 2026-08-29 11:20:31 | 5 | ||||||||
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Yandell Lab Portal Resource Report Resource Website |
Yandell Lab Portal (RRID:SCR_000807) | data analysis software, data or information resource, data processing software, laboratory portal, organization portal, portal, software application, software resource | Sequenced genomes contain a treasure trove of information about how genes function and evolve. Getting at this information, however, is challenging and requires novel approaches that combine computer science and experimental molecular biology. My lab works at the intersection of both domains, and research in our group can be summarized as follows: generate hypotheses concerning gene function and evolution by computational means, and then test these hypotheses at the bench. This is easier said than done, as serious barriers still exist to using sequenced genomes and their annotations as starting points for experimental work. Some of these barriers lie in the computational domain, others in the experimental. Though challenging, overcoming these barriers offers exciting training opportunities in both computer science and molecular genetics, especially for those seeking a future at the intersection of both fields. Ongoing projects in the lab are centered on genome annotation and comparative genomics; exploring the relationships between sequence variation and human disease; and high-throughput biological image analysis. Current software tools available: VAAST (the Variant Annotation, Analysis & Search Tool) is a probabilistic search tool for identifying damaged genes and their disease-causing variants in personal genome sequences. VAAST builds upon existing amino acid substitution (AAS) and aggregative approaches to variant prioritization, combining elements of both into a single unified likelihood-framework that allows users to identify damaged genes and deleterious variants with greater accuracy, and in an easy-to-use fashion. VAAST can score both coding and non-coding variants, evaluating the cumulative impact of both types of variants simultaneously. VAAST can identify rare variants causing rare genetic diseases, and it can also use both rare and common variants to identify genes responsible for common diseases. VAAST thus has a much greater scope of use than any existing methodology. MAKER 2 (updated 01-16-2012) MAKER is a portable and easily configurable genome annotation pipeline. It's purpose is to allow smaller eukaryotic and prokaryotic genomeprojects to independently annotate their genomes and to create genome databases. MAKER identifies repeats, aligns ESTs and proteins to a genome, produces ab-initio gene predictions and automatically synthesizes these data into gene annotations having evidence-based quality values. MAKER is also easily trainable: outputs of preliminary runs can be used to automatically retrain its gene prediction algorithm, producing higher quality gene-models on seusequent runs. MAKER's inputs are minimal and its ouputs can be directly loaded into a GMOD database. They can also be viewed in the Apollo genome browser; this feature of MAKER provides an easy means to annotate, view and edit individual contigs and BACs without the overhead of a database. MAKER should prove especially useful for emerging model organism projects with minimal bioinformatics expertise and computer resources. RepeatRunner RepeatRunner is a CGL-based program that integrates RepeatMasker with BLASTX to provide a comprehensive means of identifying repetitive elements. Because RepeatMasker identifies repeats by means of similarity to a nucleotide library of known repeats, it often fails to identify highly divergent repeats and divergent portions of repeats, especially near repeat edges. To remedy this problem, RepeatRunner uses BLASTX to search a database of repeat encoded proteins (reverse transcriptases, gag, env, etc...). Because protein homologies can be detected across larger phylogenetic distances than nucleotide similarities, this BLASTX search allows RepeatRunner to identify divergent protein coding portions of retro-elements and retro-viruses not detected by RepeatMasker. RepeatRunner merges its BLASTX and RepeatMasker results to produce a single, comprehensive XML-based output. It also masks the input sequence appropriately. In practice RepeatRunner has been shown to greatly improve the efficacy of repeat identifcation. RepeatRunner can also be used in conjunction with PILER-DF - a program designed to identify novel repeats - and RepeatMasker to produce a comprehensive system for repeat identification, characterization, and masking in the newly sequenced genomes. CGL CGL is a software library designed to facilitate the use of genome annotations as substrates for computation and experimentation; we call it CGL, an acronym for Comparitive Genomics Library, and pronounce it Seagull. The purpose of CGL is to provide an informatics infrastructure for a laboratory, department, or research institute engaged in the large-scale analysis of genomes and their annotations. | software, gene, genome annotation, human |
has parent organization: University of Utah; Utah; USA is parent organization of: VAAST |
PMID:21700766 PMID:21700266 PMID:21325948 PMID:21347285 |
nlx_144364 | SCR_000807 | 2026-08-29 11:20:37 | 0 | |||||||||
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Open Biosystems Resource Report Resource Website 10+ mentions |
Open Biosystems (RRID:SCR_000808) | instrument manufacture, material service resource, production service resource, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. Open Biosystems offers products that span Genomics, RNAi and Antibodies. Building on the rapid sharing model that is at the core of the Human Genome Project, Open Biosystems collaborates with some of the most innovative life science investigators working today. We partner with them to bring to market new productsthey have often pioneered the new resources in their own lab, and we prepare it for widespread use and then provide access to the research community. Delivery of genetic content is our most recent technological breakthrough. Recently, we brought to market the Tranz-vector system, the safest human-based lentiviral delivery technology. Further supplementing our already strong line of RNA interference (RNAi) and complementary DNA (cDNA) products, this technology provides investigators with superior delivery capabilities for high-quality cellular screening. The combination or our unique Tranz-vector system and whole genome RNAi and cDNA content enables our customers to perform drug target validation on a large scale. With our genomics resources, Open Biosystems provides the content investigators utilize to unlock the functions of human genes and their relationships to normal and disease development. We offer the most complete gene library in the industry. This novel library consists of several full length cDNA and open reading frame collections. Most prominently among these is the Mammalian Gene Collection (MGC), the industry's gold standard gene catalog. The discovery of RNA interference has revolutionized the way investigators approach the studies of gene expression, regulation and interactions, particularly as it relates to drug development. Our collaboration with Drs. Greg Hannon (CSHL) and Steve Elledge (Harvard) has led the way in the evolution of the short hairpin RNA (shRNA) technologies to provide the life science community with whole genome resources for human, mouse and rat with a multitude of technology and delivery advantages. | open reading frame, cdna, antibody, commercial |
is related to: BMAP cDNA Resources is related to: Mammalian Gene Collection |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144444 | SCR_000808 | Open Biosystems - RNAi Gene Expression Antibodies | 2026-08-29 11:20:49 | 10 | ||||||||
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aTag Generator Resource Report Resource Website |
aTag Generator (RRID:SCR_000801) | aTag, aTags, | software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 13, 2012. Snippets of HTML that capture the information that is most important in a machine-readable, interlinked format, making it easier to see the big picture. aTags work with any Web text and can store and connect any textual element that is highlighted in a browser. The structure of the embedded RDF/OWL is decidedly simple: a very short piece of human-readable text that is "tagged" with relevant ontological entities. An aTag generator can be easily added to any web browser and allows researchers to quickly generate aTags out of key statements from web pages, such as PubMed abstracts. The resulting aTags can be embedded anywhere on the web, for example on blogs, wikis, or biomedical databases. aTag demonstrates how the resulting statements that are distributed over the web can be searched, visualized and aggregated with Semantic Web / Linked Data tools, and discusses how aTags can be used to answer practically relevant biomedical questions even though their structure is very simple. aTags are based on Semantic Web standards and Linked Data practices. Specifically, they make use of RDFa, the SIOC vocabulary and various domain ontologies and taxonomies that are available in RDF/OWL format. The autocomplete functionality is based on Apache Solr. Reference: Simple, ontology-based representation of biomedical statements through fine-granular entity tagging and new web standards Matthias Samwald and Holger Stenzhorn. Bio-Ontologies 2009., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | semantic mark up, ontology, semantic tagging |
is listed by: FORCE11 has parent organization: Digital Enterprise Research Institute |
Konrad Lorenz Institute for Evolution and Cognition Research; Altenberg; Austria ; Science Foundation Ireland SFI/08/CE/I1380 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-37038 | SCR_000801 | associative tags, associated tags | 2026-08-29 11:20:31 | 0 | ||||||
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Ecole Normale Superieure; Paris; France Resource Report Resource Website |
Ecole Normale Superieure; Paris; France (RRID:SCR_000960) | ENS | university | A higher education institute for advanced undergraduate and graduate studies in France. The institute has fourteen teaching and research departments that span the humanities and sciences. | france, french, undergraduate, graduate |
is parent organization of: Brian Simulator is parent organization of: yMGV - Yeast microarray global viewer |
grid.5607.4, ISNI: 121105547, nlx_73418, Crossref funder ID: 100007649, Wikidata: Q83259 | https://ror.org/05a0dhs15 | SCR_000960 | Ecole Normale Superieure, �cole Normale Sup�rieure | 2026-08-29 11:20:39 | 0 | |||||||
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Catholic University of the Sacred Heart; Milan; Italy Resource Report Resource Website 100+ mentions |
Catholic University of the Sacred Heart; Milan; Italy (RRID:SCR_000958) | UCSC | university | An Italian private research university that offers undergraduate, graduate and postdoctoral level degrees in both Italian and English. | italy, private, research, undergraduate, graduate, english, italian | is related to: PharmaCog | ISNI:0000 0001 0941 3192, Wikidata:Q229022, nlx_158321, grid.8142.f, Crossref funder ID:501100005743 | https://ror.org/03h7r5v07 | SCR_000958 | Catholic University of the Sacred Heart, Universita Cattolica del Sacro Cuore, Universit� Cattolica del Sacro Cuore, Universit� Cattolica, Universita Cattolica | 2026-08-29 11:20:33 | 154 | |||||||
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Keyose Resource Report Resource Website |
Keyose (RRID:SCR_000798) | software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on March 5, 2014. Keyose is a project designed and led by a family physician. We are not IT focused, but health-care focused. Technology is just a tool, not our purpose. | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-31988 | http://www.keyose.com | SCR_000798 | Keyose | 2026-08-29 11:20:36 | 0 | |||||||||
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Australian Research Council Resource Report Resource Website 100+ mentions |
Australian Research Council (RRID:SCR_000952) | ARC | nonprofit organization | An Australian government agency that allocates research funding to academics and researchers at Australian universities. The mission of the council is to deliver policy and programs that advance Australian research, spur innovation and benefit the community. | funding, allocation, australia, research, academic, policy, public health, community, grant | is parent organization of: RAiD | ISNI: 0000 0004 0611 9213, Wikidata: Q4824612, nlx_156882, grid.413452.5, Crossref funder ID: 501100000923 | https://ror.org/05mmh0f86 | SCR_000952 | ARC | 2026-08-29 11:20:39 | 356 | |||||||
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Academia Sinica; Taipei; Taiwan Resource Report Resource Website |
Academia Sinica; Taipei; Taiwan (RRID:SCR_000950) | university | The national academy of Taiwan that supports research activities in a wide variety of disciplines, ranging from mathematical and physical sciences, to life sciences, and to humanities and social sciences. The institution plays a particularly important role in the academic field of Chinese Studies. | national, academy, research, math, physical science, life science, humanities, social science, chinese studies |
is parent organization of: HiPipe is parent organization of: FastSNP is parent organization of: Gene Ontology Browsing Utility (GOBU) is parent organization of: IGDB.NSCLC is parent organization of: CNVVdb - Copy Number Variations across Vertebrate genomes is parent organization of: Encyclopedia of Hepatocellular Carcinoma Genes Online is parent organization of: KnowPredsite |
THIS RESOURCE IS NO LONGER IN SERVICE | ISNI:0000 0001 2287 1366, Crossref funder ID:501100001869, grid.28665.3f, nlx_89460, Wikidata:Q337266 | https://ror.org/05bxb3784 | SCR_000950 | 2026-08-29 11:20:32 | 0 | ||||||||
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Brown University; Rhode Island; USA Resource Report Resource Website |
Brown University; Rhode Island; USA (RRID:SCR_000957) | university | A private, Ivy League research university in Rhode Island, USA. The university offers degrees at the undergraduate and graduate level in a wide variety of fields. | private, university, research, undergraduate, graduate |
uses: ReadCube is related to: Mnemiopsis Genome Project Portal is parent organization of: HapCompass is parent organization of: ASC is parent organization of: Laboratory for Neural Computation and Cognition is parent organization of: Basal Ganglia Model in Action is parent organization of: Mutation Annotation and Genomic Interpretation is parent organization of: Brown University Rhode Island Biobank Core Facility is parent organization of: GASVPro is parent organization of: Spliceman is parent organization of: Brown University Alpert Medical School Department of Molecular Pharmacology Physiology and Biotechnology is parent organization of: Brown University Department of Neuroscience is parent organization of: Brown Alpert Medical School; Rhode Island; USA is parent organization of: Rnnotator is parent organization of: Brown University Genomics Core Facility is parent organization of: Brown Proteomics Shared Resource Facility is parent organization of: Brown University Labs and Facilities is parent organization of: THetA is parent organization of: North East Cyberinfrastructure Consortium is parent organization of: GASV is parent organization of: Human Neocortical Neurosolver is parent organization of: Brown Alpert Medical School Women and Infants Hospital of Rhode Island Kilguss Research Institute Molecular Biology and Imaging Core Facility is parent organization of: RepEnrich is parent organization of: Brown University Clinical Laboratory Core Facility is parent organization of: Brown University Health Center of Biomedical Research Excellence on Opioids and Overdose Admin Core Facility is parent organization of: Brown University BUH-OPIOID-COBRE Community Engagement Core Facility is parent organization of: Brown University BUH-COBRE Translational and Transformative Core Facility is parent organization of: Brown University BUH-OPIOID COBRE Data and Research Methods Core Facility |
ISNI:0000 0004 1936 9094, Crossref funder ID:100006418, grid.40263.33, Wikidata:Q49114, nlx_78147 | https://ror.org/05gq02987 | SCR_000957 | Brown | 2026-08-29 11:20:53 | 0 | ||||||||
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Austrian Agency for Health and Food Safety Resource Report Resource Website |
Austrian Agency for Health and Food Safety (RRID:SCR_000955) | AGES | nonprofit organization | A company based in Austria that supports the management of federal agencies relating to public health, animal health, food safety, medical and drug safety, food security and consumer protection. They provide professional and scientific expertise. | public health, animal health, food safety, medical and drug safety, food security, consumer protection, research, austria, | grid.414107.7, ISNI: 0000 0001 2224 6253, nlx_157916 | https://ror.org/055xb4311 | http://www.ages.at/ages/en/ | SCR_000955 | Austrian Agency for Health and Food Safety (AGES) | 2026-08-29 11:20:32 | 0 |
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