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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Dataset processing Resource Report Resource Website |
Dataset processing (RRID:SCR_010303) | ONL-DP | controlled vocabulary, data or information resource, ontology | Ontology that is a module of the OntoNeuroLOG ontology, that covers the domain of Datasets and the processing of datasets developed in the context of the NeuroLOG project, a french project aiming at integrating distributed heterogeous resources in neuroimaging. It includes a detailed taxonomy of datasets in the area of neuroimaging (and especially MR imaging) as well as a taxonomy of medical image processing. | owl neuroimaging, mri | is listed by: BioPortal | French National Research Agency ANR-06-TLOG-024 | nlx_157382 | SCR_010303 | 2026-09-05 06:26:38 | 0 | ||||||||
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BRENDA Tissue and Enzyme Source Ontology Resource Report Resource Website 1+ mentions |
BRENDA Tissue and Enzyme Source Ontology (RRID:SCR_010031) | BTO | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary for the source of an enzyme. It comprises terms for tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms. | obo |
is used by: TISSUES is listed by: BioPortal has parent organization: BRENDA |
nlx_157323 | SCR_010031 | 2026-09-05 06:26:36 | 1 | |||||||||
|
Artificial Intelligence Rheumatology Consultant System Ontology Resource Report Resource Website |
Artificial Intelligence Rheumatology Consultant System Ontology (RRID:SCR_010274) | AI-RHEUM | controlled vocabulary, data or information resource, ontology | Ontology used for the diagnosis of rheumatologic diseases. AI/RHEUM contains findings, such as clinical signs, symptoms, laboratory test results, radiologic observations, tissue biopsy results, and intermediate diagnosis hypotheses. Findings and hypotheses, which include definitions, are used to reach diagnostic conclusions with definite, probable, or possible certainty. AI/RHEUM is used by clinicians and informatics researchers. | umls | is listed by: BioPortal | Rheumatologic disease | nlx_157320 | SCR_010274 | 2026-09-05 06:26:38 | 0 | ||||||||
|
Leukocyte Surface Marker Ontology Resource Report Resource Website |
Leukocyte Surface Marker Ontology (RRID:SCR_010275) | LSM | controlled vocabulary, data or information resource, ontology | An ontology of CD markers for lymphocyte classification in the cell ontology, and other categories of surface and secreted proteins useful for discriminating between lymphocyte subsets by flow cytometry, ELISPOT, ELISA and other assays typically used for phenotypic identification of individual lymphocytes or lymphocyte populations have been included. | obo | is listed by: BioPortal | nlx_157457 | SCR_010275 | 2026-09-05 06:26:38 | 0 | |||||||||
|
Fanconi Anemia Ontology Resource Report Resource Website |
Fanconi Anemia Ontology (RRID:SCR_010319) | IFAR | controlled vocabulary, data or information resource, ontology | An application ontology devoted to the standardized recording of data related to Fanconi Anemia (FA). This ontology was created using an OWL file provided by Dr. Ada Hamish (and Francois Schiettecatte) at the Centers for Mendelian Genetics, with their permission. Their original ontology can be found at: http://phenodb.net/help/features. Modifications were made using HPO, OMIM, NCI, and SNOMED. Novel classes pertaining to FA were added and defined as appropriate. | owl | is listed by: BioPortal | Fanconi Anemia | nlx_157403 | http://lab.rockefeller.edu/smogorzewska/ifar/ | SCR_010319 | 2026-09-05 06:26:39 | 0 | |||||||
|
Electrocardiography Ontology Resource Report Resource Website |
Electrocardiography Ontology (RRID:SCR_010313) | ECG | controlled vocabulary, data or information resource, ontology | Ontology for describing electrocardiograms, their capture method(s) and their waveforms. | owl |
is listed by: BioPortal has parent organization: CardioVascular Research Grid (CVRG) |
nlx_157394 | SCR_010313 | ECG Ontology | 2026-09-05 06:26:38 | 0 | ||||||||
|
Cellular microscopy phenotype ontology Resource Report Resource Website |
Cellular microscopy phenotype ontology (RRID:SCR_010282) | CMPO | controlled vocabulary, data or information resource, ontology | A species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations. CMPO is an application ontology developed in OWL that contains precomposed phenotypes descriptions that are defined using the Gene Ontology (GO) and the Phenotype Trait Ontology (PATO). | owl, phenotype | is listed by: BioPortal | nlx_157357 | https://github.com/EBISPOT/CMPO | SCR_010282 | 2026-09-05 06:26:38 | 0 | ||||||||
|
ABA Adult Mouse Brain Ontology Resource Report Resource Website |
ABA Adult Mouse Brain Ontology (RRID:SCR_010286) | ABA-AMB | controlled vocabulary, data or information resource, ontology | Allen Brain Atlas P56 Mouse Ontology | owl |
is listed by: BioPortal has parent organization: Allen Institute for Brain Science |
nlx_157311 | SCR_010286 | Allen Brain Atlas (ABA) Adult Mouse Brain Ontology, Allen Brain Atlas Adult Mouse Brain Ontology | 2026-09-05 06:26:38 | 0 | ||||||||
|
AEO Resource Report Resource Website |
AEO (RRID:SCR_010287) | AEO | controlled vocabulary, data or information resource, ontology | An ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology, to about 200 classes using the is_a relationship; it thus provides a detailed type classification for tissues. The new classes were chosen for their use in categorizing the major vertebrate and invertebrate anatomy ontologies at a granularity adequate for tissues of a single cell type. The ontology should be useful in increasing the amount of knowledge in anatomy ontologies, facilitating annotation and enabling interoperability across anatomy ontologies | obo |
is listed by: BioPortal has parent organization: OBO |
nlx_157312 | http://purl.bioontology.org/ontology/AEO | SCR_010287 | Anatomical Entity Ontology, Ontology of Anatomical Entities - AEO | 2026-09-05 06:26:38 | 0 | |||||||
|
African Traditional Medicine Ontology Resource Report Resource Website |
African Traditional Medicine Ontology (RRID:SCR_010288) | ATMO | controlled vocabulary, data or information resource, ontology | Ontology that describes the actors'' function (healer, fetishist or soothsayer); the different types of proposed process treatment, the symptom''s roles and the disease consideration. | obo | is listed by: BioPortal | nlx_157313 | SCR_010288 | 2026-09-05 06:26:38 | 0 | |||||||||
|
Biomedical Research Integrated Domain Group Model Resource Report Resource Website |
Biomedical Research Integrated Domain Group Model (RRID:SCR_010265) | BRIDG | controlled vocabulary, data or information resource, ontology | An instance of a Domain Analysis Model (DAM) with the goal of producing a shared view of the dynamic and static semantics for the domain of protocol-driven research and its associated regulatory artifacts. This domain of interest is further defined as: Protocol-driven research and its associated regulatory artifacts: i.e. the data, organization, resources, rules, and processes involved in the formal assessment of the utility, impact, or other pharmacological, physiological, or psychological effects of a drug, procedure, process, or device on a human, animal, or other subject or substance plus all associated regulatory artifacts required for or derived from this effort, including data specifically associated with post-marketing adverse event reporting. The Biomedical Research Integrated Domain Group (BRIDG) Model is a collaborative effort engaging stakeholders from the Clinical Data Interchange Standards Consortium (CDISC), the HL7 Regulated Clinical Research Information Management Technical Committee (RCRIM TC), the National Cancer Institute (NCI) and its Cancer Biomedical Informatics Grid (caBIG??), and the US Food and Drug Administration (FDA). Source repository: https://ncisvn.nci.nih.gov/WebSVN/listing.php?repname=bridg-model&path=%2Ftrunk%2FModel+-+OWL%2F& | owl |
is listed by: BioPortal has parent organization: National Cancer Institute |
nlx_157336 | http://www.bridgmodel.org/ | SCR_010265 | BRIDG Model | 2026-09-05 06:26:38 | 0 | |||||||
|
Vertebrate Homologous Organ Group Ontology Resource Report Resource Website |
Vertebrate Homologous Organ Group Ontology (RRID:SCR_010444) | VHOG | controlled vocabulary, data or information resource, ontology | A multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. The mapping to species-specific anatomical ontologies is provided as a separated file: http://bgee.unil.ch/download/organ_association_vHOG.txt This mapping represents homology-strict relationships, in the sense of HOM:0000007 historical homology. Each mapping has been manually reviewed, and theye provide confidence codes and references when available. | obo | is listed by: BioPortal | nlx_157623 | SCR_010444 | 2026-09-05 06:26:42 | 0 | |||||||||
|
Veterans Health Administration National Drug File Resource Report Resource Website |
Veterans Health Administration National Drug File (RRID:SCR_010445) | VANDF, NDF | controlled vocabulary, data or information resource, ontology | Ontology that includes information on clinical drugs, drug classes, ingredients and National Drug Code (NDC) Directory codes. | umls | is listed by: BioPortal | nlx_157626 | SCR_010445 | 2026-09-05 06:26:42 | 0 | |||||||||
|
Vital Sign Ontology Resource Report Resource Website 1+ mentions |
Vital Sign Ontology (RRID:SCR_010446) | VSO | controlled vocabulary, data or information resource, ontology | An extension of the Ontology for General Medical Science (OGMS) that covers the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. VSO provides also a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements. | owl | is listed by: BioPortal | nlx_157627 | SCR_010446 | 2026-09-05 06:26:42 | 1 | |||||||||
|
WHO Adverse Reaction Terminology Resource Report Resource Website |
WHO Adverse Reaction Terminology (RRID:SCR_010447) | WHO-ART | controlled vocabulary, data or information resource | Ontology of the WHO adverse reaction terminology, 1997. | umls |
is listed by: BioPortal has parent organization: World Health Organization |
nlx_157628 | SCR_010447 | World Health Organization (WHO) Adverse Reaction Terminology, World Health Organization Adverse Reaction Terminology | 2026-09-05 06:26:42 | 0 | ||||||||
|
suicideo Resource Report Resource Website |
suicideo (RRID:SCR_010451) | SuicidO | controlled vocabulary, data or information resource, ontology | Ontology of suicidology. | owl | is listed by: BioPortal | nlx_157632 | SCR_010451 | 2026-09-05 06:26:42 | 0 | |||||||||
|
Genomic Clinical Decision Support Ontology Resource Report Resource Website |
Genomic Clinical Decision Support Ontology (RRID:SCR_010331) | GENE-CDS | controlled vocabulary, data or information resource, ontology | Ontology to unify several functionalities in a single resource, being: * A knowledge base for clinical pharmacogenomics/pharmacogenetics that can be used for question-answering (e.g., which SNPs are associated with this drug?) * A rule base for clinical decision support (e.g., inferring that a patient with a specific set of SNPs requires a lowered dose of warfarin and generating a CDS message that can be viewed by clinicians) * A tool for checking data consistency (e.g., highlighting which allele definitions in PharmGKB are overlapping, or which clinical decision support rules are matching the same group of patients) | owl | is listed by: BioPortal | nlx_157419 | SCR_010331 | Genomic CDS ontology | 2026-09-05 06:26:39 | 0 | ||||||||
|
GeoSpecies Ontology Resource Report Resource Website |
GeoSpecies Ontology (RRID:SCR_010332) | GEOSPECIES | controlled vocabulary, data or information resource, ontology | Ontology to help integrate species concepts with species occurrences, gene sequences, images, references and geographical information. See also Taxonconcept.org | owl | is listed by: BioPortal | nlx_157420 | SCR_010332 | 2026-09-05 06:26:39 | 0 | |||||||||
|
Pseudogene Resource Report Resource Website 100+ mentions |
Pseudogene (RRID:SCR_010453) | pseudo | controlled vocabulary, data or information resource, ontology | Ontology for pseudogenes including biological feature, classified type, Evidence code, and subcellular origin. | obo | is listed by: BioPortal | nlx_157640 | SCR_010453 | 2026-09-05 06:26:42 | 141 | |||||||||
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Terminology for the Description of Dynamics Resource Report Resource Website 1+ mentions |
Terminology for the Description of Dynamics (RRID:SCR_010454) | TEDDY | controlled vocabulary, data or information resource, ontology | Ontology for dynamical behaviors, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology. | Ontology for dynamical behaviors, Systems Biology, Synthetic Biology, ontology, owl, dynamical behaviors, observable dynamical phenomena, control elements, bio-models and biological systems | is listed by: BioPortal | nlx_157641 | http://purl.bioontology.org/ontology/MO | SCR_010454 | 2026-09-05 06:26:42 | 9 |
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