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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Precisionary: Compresstome VF-700 Resource Report Resource Website 1+ mentions |
Precisionary: Compresstome VF-700 (RRID:SCR_018409) | instrument resource | Vibrotome by Precisionary Instruments designed for cutting fixed tissue slices for histology studies. Offers two point stabilization of blade holder to eliminate unwanted chatter marks on surfaces of tissue slice. Fully automated to section fixed tissues with thickness range of 4 um to 2000 um with adjustable precision of 1 um. | Precisionary Instrument, cutting fixed tissue, tissue slice, histology, two point stabilization blade holder, instrument, equipment | Restricted | https://nbtltd.com/wp-content/uploads/2019/11/compresstome-vf-700-0z-user-manual_final.pdf | SCR_018409 | Compresstome VF-700-0Z | 2026-09-19 12:53:51 | 1 | |||||||||
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Database of Immune Cell Epigenomes Resource Report Resource Website 50+ mentions |
Database of Immune Cell Epigenomes (RRID:SCR_018259) | DICE | data access protocol, data or information resource, database, software resource, web service | Database of Immune Cell Expression, Expression quantitative trait loci (eQTLs) and Epigenomics. Collection of identified cis-eQTLs for 12,254 unique genes, which represent 61% of all protein-coding genes expressed in human cell types. Datasets to help reveal effects of disease risk associated genetic polymorphisms on specific immune cell types, providing mechanistic insights into how they might influence pathogenesis. | Data set, immune cell expression, expression quantitative trait loci, epigenomics, data, cis-eQLC, gene, protein coding gene, human cell type, genetic polymorphism disease, immune cell, pathogenesis | has parent organization: La Jolla Institute for Immunology | NCRR S10 RR027366; NIAID R24 AI108564; NIH Office of the Director S10 OD016262; William K. Bowes Jr Foundation |
PMID:30449622 | Free, Freely available | SCR_018259 | Database of Immune Cell Expression, Expression quantitative trait loci (eQTLs) and Epigenomics | 2026-09-19 12:53:49 | 73 | ||||||
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Olympus: VS120 microscope Resource Report Resource Website 10+ mentions |
Olympus: VS120 microscope (RRID:SCR_018411) | instrument resource | VS120 Virtual Slide Microscope. Part of slide loader system for manually loading standard slides by Olympus. | Microscope, Virtual Slide Microscopy, Instrument operator, slide loader system, loading standard slide, Olympus, instrument, equipment, USEDit | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018411.pdf | Model_Number_VS120 | https://health.usf.edu/-/media/Files/Medicine/Core/Olympus-VS120-QS-E.ashx | SCR_018411 | Olympus VS120, VS120 Virtual Slide Microscope | 2026-09-19 12:53:51 | 15 | |||||||
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Biolucida Resource Report Resource Website 1+ mentions |
Biolucida (RRID:SCR_018256) | data analysis software, data management software, data processing software, data storage software, software application, software resource | Enables visualization, storage and sharing of large image data. Cloud based system by MBF Bioscience to help with data from 2D and 3D slide scanners, confocal Z-stacks, lightsheet whole brain images. System for data storage and management, data analysis and visualization. Data is stored in secure and permanent way. Available also is free application named Biolucida Viewer, for viewing public images or images shared by collaborators owning Biolucida. | biolucida, big data, image, Microscopy, whole slide images, virtual images, cloud, visualization, data storage, data analysis | is used by: SPARC Portal | DOI:10.1002/cne.23329 | Restricted | http://wiley.biolucida.net/link/ | SCR_018256 | , Micro File Plus, MicroFile+, MicroFile | 2026-09-19 12:53:49 | 6 | |||||||
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https://www.thermofisher.com/order/catalog/product/4366073#/4366073 Resource Report Resource Website |
https://www.thermofisher.com/order/catalog/product/4366073#/4366073 (RRID:SCR_018377) | Mastermix reagent | SCR_018377 | 2026-09-19 12:53:51 | 0 | ||||||||||||||
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SymPy Resource Report Resource Website 10+ mentions |
SymPy (RRID:SCR_018417) | software library, software resource, software toolkit | Software Python library for symbolic mathematics. It aims to become full featured computer algebra system (CAS) while keeping code as simple as possible in order to be comprehensible and easily extensible. | Python, Python library, symbolic mathematics, computer algebra system, bio.tools |
is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:SymPy | https://bio.tools/SymPy | SCR_018417 | 2026-09-19 12:53:51 | 10 | ||||||||
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multcomp Resource Report Resource Website 10+ mentions |
multcomp (RRID:SCR_018255) | data analysis software, data analytics software, data processing software, software application, software resource | Software R package for simultaneous inference in general parametric models. Offers interface to perform multiple comparisons in general context. Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models. | Simultaneous inference, parametric model, simultaneous test, confidence interval, linear hypotheses, survival model | is listed by: CRAN | Free, Freely available | http://multcomp.r-forge.r-project.org/ | SCR_018255 | 2026-09-19 12:53:49 | 26 | |||||||||
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GlycoCalyx: GlycoCheck Resource Report Resource Website 1+ mentions |
GlycoCalyx: GlycoCheck (RRID:SCR_018254) | instrument resource | Microvascular health measurement system that measures endothelial glycocalyx layer of vessels by MicroVascular Health Solutions. Software automatically identifies measurable micro vessels, below 30 µm thickness, during acquisition by contrast between RBC and background. After acquisition, software undergoes series of quality checks to measure vascular segments that are of good quality. Video microscope is placed under tongue, showing live movement of red blood cells as they travel through micro vessels. | Microvascular measurement system, endothelial glycocalyx layer, micro vessel, MicroVascular Health Solutions, video microscope, red blood cell movement, equipment, instrument | DOI:10.1371/journal.pone.0096477 | Restricted | https://glycocheck.com/wp-content/uploads/2021/12/New-GlycoCheck-Brochure.pdf | SCR_018254 | 2026-09-19 12:53:49 | 2 | |||||||||
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Pyflakes Resource Report Resource Website |
Pyflakes (RRID:SCR_018422) | data analysis software, data processing software, software application, software resource | Software tool to check Python source files for errors. Passive checker of Python programs Used to analyze programs and detect various errors. Works by parsing source file, not importing it, so it is safe to use on modules with side effects. | Python, check Python source file, check file error, analyze program, detect error | Free, Available for download, Freely available | https://github.com/PyCQA/pyflakes | SCR_018422 | pyflakes 2.2.0 | 2026-09-19 12:53:51 | 0 | |||||||||
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smashpp Resource Report Resource Website 1+ mentions |
smashpp (RRID:SCR_018307) | data analysis software, data processing software, data visualization software, software application, software resource | Software tool to find and visualize rearrangements in DNA sequences. | Find sequence rearrangement, visualize sequence rearrangement, DNA, DNA sequence, DNA sequence rearrangement, bio.tools |
is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:smashpp, BioTools:smashpp | https://bio.tools/smashpp, https://bio.tools/smashpp, https://bio.tools/smashpp | SCR_018307 | Smash++ | 2026-09-19 12:53:50 | 2 | |||||||
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FHC: Platinum/Iridium microelectrode Resource Report Resource Website 1+ mentions |
FHC: Platinum/Iridium microelectrode (RRID:SCR_018426) | instrument resource | A platinum/iridium electrode use for stimulating tissue samples. Manufactured by FHC Neural microTargeting Worldwide. | stimulating electrode, microelectrode, metal microelectrode, platinum, platinum and iridium, Pt/Ir, FHC, stimtrode, platinum/iridium electrode, Pt/Ir electrode, stimtrode, Pt/Ir stimtrode | Restricted | SCR_018426 | 2026-09-19 12:53:52 | 8 | |||||||||||
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DIANA Tools Resource Report Resource Website 10+ mentions |
DIANA Tools (RRID:SCR_018425) | algorithm resource, data or information resource, database, portal, project portal, service resource, software resource | Collection of tools to provide algorithms, databases and software for interpreting and archiving data in systematic framework ranging from analysis of expression regulation from deep sequencing data, annotation of miRNA regulatory elements and targets to interpretation of role of ncRNAs in various diseases and pathways. Includes target prediction algorithms microT v4 and microT-CDS, databases of experimentally verified miRNA targets on coding and non-coding RNAs like TarBase v7.0 and LncBase, and software capable of identifying potentially altered molecular pathways by expression of single or multiple miRNAs , mirPath. Provides Web Server (v5.0) to support series of workflows enabling users to perform miRNA analyses. | miRNA data, miRNA regulatory element, miRNA target annotation, ncRNA, target prediction algorithm, miRNA target database, miRNA analysis |
has parent organization: University of Thessaly; Thessaly; Greece provides: DIANA microT-CDS provides: DIANA-mirExTra provides: DIANA-mirPath provides: TarBase provides: TarBase |
Free, Freely available | SCR_018425 | 2026-09-19 12:53:51 | 47 | ||||||||||
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GPS-SUMO Resource Report Resource Website 1+ mentions |
GPS-SUMO (RRID:SCR_018261) | data access protocol, data or information resource, portal, service resource, software resource, web service | Web service for prediction of SUMOylation sites and SUMO-interaction motifs in proteins by CUCKOO Workgroup. | Small ubiquitin like modifier, SUMOs, sumoylation, covalently modified protein, group prediction system, site prediction, interaction motif in protein, bio.tools |
is listed by: Debian is listed by: bio.tools |
Guangdong Natural Science Funds for Distinguished Young Scholar ; International Science and Technology Cooperation Program of China ; National Basic Research Program ; National Natural Science Foundation of China ; Zhujiang Nova Program of Guangzhou |
PMID:24880689 | Restricted | biotools:gps-sumo | http://sumosp.biocuckoo.org/online.php, https://bio.tools/gps-sumo | SCR_018261 | Group-based Prediction System -Small Ubiquitin-like MOdifiers, Small Ubiquitin-like MOdifiers sp, GPS-SUMO 2.0, SUMOsp, GPS Small Ubiquitin-like MOdifiers, Group-based Prediction System-SUMO | 2026-09-19 12:53:49 | 6 | |||||
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R scripts for FLIC data analysis Resource Report Resource Website 10+ mentions |
R scripts for FLIC data analysis (RRID:SCR_018386) | data analysis software, data processing software, software application, software resource, source code | R Code used to analyze FLIC data. Functions are provided to examine interactions with food for single well and food choice experiments when fly makes physical contact with liquid food. | Fly Liquid Food Interaction Counter, FLIC, FLIC data analysis, fly physical contact, liquid food fly interaction, data analysis | PMID:24978054 | Free, Available for download, Freely available | https://github.com/PletcherLab/FLIC_R_Code | SCR_018386 | R scripts for Fly Liquid Food Interaction Counter data analysis | 2026-09-19 12:53:51 | 14 | ||||||||
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SocOpen Resource Report Resource Website |
SocOpen (RRID:SCR_018384) | SOCOPEN | blog, data or information resource, narrative resource, portal | Portal for information about moderation of social science papers. Home for SocArXiv. Blog and information center. Site hosts announcements of news and developments related to archive, as well as essays that reflect views of listed authors. | SocArXiv, SocArXiv paper, social science paper, social science archive, reflected view essay, listed author view, social science information center | Free, Freely available | SCR_018384 | 2026-09-19 12:53:51 | 0 | ||||||||||
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CuGenDB Resource Report Resource Website 100+ mentions |
CuGenDB (RRID:SCR_018401) | CuGenDB | data or information resource, database, portal, topical portal | Database to facilitate genomic and genetic data distribution, analysis, mining and integration for cucurbits. To store, mine, analyze, integrate and disseminate Cucurbitaceae family datasets and to provide central portal for cucurbit research and breeding community. Central portal for comparative and functional genomics of cucurbit crops. | Genomic data, genetic data, cucurbit, data distribution, data analysis, data mining, data integration, dataset, comparative genomics, functional genomics, cucurbit crop, FASEB list | International Cucurbit Genomics Initiative ; US-Israel Binational Agricultural Research and Development Fund ; USDA Agricultural Research Service ; USDA National Institute of Food and Agriculture Specialty Crop Research Initiative |
PMID:30321383 | Free, Freely available | SCR_018401 | Cucurbit Genomics Database, Cucurbitaceae family Genomics Database | 2026-09-19 12:53:51 | 285 | |||||||
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Planmeca Romexis Resource Report Resource Website 1+ mentions |
Planmeca Romexis (RRID:SCR_018403) | data acquisition software, data processing software, image acquisition software, software application, software resource | Software tool as 3D imaging software. Flexible and intuitive all-in-one dental software platform. Provides set of tools to meet imaging needs by any dental facility. | 3D imaging software, dental software, 3D image, dental | Restricted | SCR_018403 | 2026-09-19 12:53:51 | 1 | |||||||||||
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Biorender Resource Report Resource Website 10000+ mentions |
Biorender (RRID:SCR_018361) | service resource, software resource, web application | Web tool for graphical illustrations for biological systems by BioRender. Used for articles and presentations. Collection of pre made icons and templates from life science fields for scientific illustrations. Customized icons possible on request. | Graphical illustration, biological system, pre made icon, pre made template, scientific illustration, customized icon | Restricted | SCR_018361 | 2026-09-19 12:53:51 | 26474 | |||||||||||
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Positional Gene Enrichment Resource Report Resource Website 1+ mentions |
Positional Gene Enrichment (RRID:SCR_018360) | PGE | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web tool implementing positional gene enrichment analysis of gene sets for high resolution identification of over represented chromosomal regions. | Fund for Scientific Research Flanders ; UGent |
PMID:18346969 | Free, Freely available | http://homes.esat.kuleuven.be/~bioiuser/pge/ | SCR_018360 | Positional Gene Enrichment, PGE analysis | 2026-09-19 12:53:50 | 1 | |||||||
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SEDFIT Resource Report Resource Website 10+ mentions |
SEDFIT (RRID:SCR_018365) | data analysis software, data processing software, software application, software resource | Software tool for analytical ultracentrifugation developed by Dynamics of Macromolecular Assembly group of Laboratory of Cellular Imaging and Macromolecular Biophysics, National Institute of Biomedical Imaging and Bioengineering, NIH. Used for biophysical analysis of macromolecular assembly. | Analytical ultracentrifugation, biophysical analysis, macromolecular assembly, data, analysis, National Institute of Biomedical Imaging and Bioengineering | is listed by: SoftCite | NIH | Free, Available for download, Freely available | SCR_018365 | SEDFIT version 14.7g | 2026-09-19 12:53:51 | 32 |
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