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https://precisionary.com/wp-content/uploads/2018/06/Compresstome-VF-700-0Z-User-Manual_FINAL.pdf
Vibrotome by Precisionary Instruments designed for cutting fixed tissue slices for histology studies. Offers two point stabilization of blade holder to eliminate unwanted chatter marks on surfaces of tissue slice. Fully automated to section fixed tissues with thickness range of 4 um to 2000 um with adjustable precision of 1 um.
Proper citation: Precisionary: Compresstome VF-700 (RRID:SCR_018409) Copy
Database of Immune Cell Expression, Expression quantitative trait loci (eQTLs) and Epigenomics. Collection of identified cis-eQTLs for 12,254 unique genes, which represent 61% of all protein-coding genes expressed in human cell types. Datasets to help reveal effects of disease risk associated genetic polymorphisms on specific immune cell types, providing mechanistic insights into how they might influence pathogenesis.
Proper citation: Database of Immune Cell Epigenomes (RRID:SCR_018259) Copy
https://www.olympus-lifescience.com/en/microscopes/virtual/vs120/
VS120 Virtual Slide Microscope. Part of slide loader system for manually loading standard slides by Olympus.
Proper citation: Olympus: VS120 microscope (RRID:SCR_018411) Copy
https://www.mbfbioscience.com/biolucida
Enables visualization, storage and sharing of large image data. Cloud based system by MBF Bioscience to help with data from 2D and 3D slide scanners, confocal Z-stacks, lightsheet whole brain images. System for data storage and management, data analysis and visualization. Data is stored in secure and permanent way. Available also is free application named Biolucida Viewer, for viewing public images or images shared by collaborators owning Biolucida.
Proper citation: Biolucida (RRID:SCR_018256) Copy
https://www.thermofisher.com/order/catalog/product/4366073#/4366073
Mastermix reagent
Proper citation: https://www.thermofisher.com/order/catalog/product/4366073#/4366073 (RRID:SCR_018377) Copy
https://www.sympy.org/en/index.html
Software Python library for symbolic mathematics. It aims to become full featured computer algebra system (CAS) while keeping code as simple as possible in order to be comprehensible and easily extensible.
Proper citation: SymPy (RRID:SCR_018417) Copy
https://CRAN.R-project.org/package=multcomp
Software R package for simultaneous inference in general parametric models. Offers interface to perform multiple comparisons in general context. Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models.
Proper citation: multcomp (RRID:SCR_018255) Copy
https://glycocheck.com/health-score-technology/
Microvascular health measurement system that measures endothelial glycocalyx layer of vessels by MicroVascular Health Solutions. Software automatically identifies measurable micro vessels, below 30 µm thickness, during acquisition by contrast between RBC and background. After acquisition, software undergoes series of quality checks to measure vascular segments that are of good quality. Video microscope is placed under tongue, showing live movement of red blood cells as they travel through micro vessels.
Proper citation: GlycoCalyx: GlycoCheck (RRID:SCR_018254) Copy
https://pypi.org/project/pyflakes/
Software tool to check Python source files for errors. Passive checker of Python programs Used to analyze programs and detect various errors. Works by parsing source file, not importing it, so it is safe to use on modules with side effects.
Proper citation: Pyflakes (RRID:SCR_018422) Copy
https://github.com/smortezah/smashpp
Software tool to find and visualize rearrangements in DNA sequences.
Proper citation: smashpp (RRID:SCR_018307) Copy
https://www.fh-co.com/product/metal-microelectrodes/
A platinum/iridium electrode use for stimulating tissue samples. Manufactured by FHC Neural microTargeting Worldwide.
Proper citation: FHC: Platinum/Iridium microelectrode (RRID:SCR_018426) Copy
http://diana.imis.athena-innovation.gr/DianaTools
Collection of tools to provide algorithms, databases and software for interpreting and archiving data in systematic framework ranging from analysis of expression regulation from deep sequencing data, annotation of miRNA regulatory elements and targets to interpretation of role of ncRNAs in various diseases and pathways. Includes target prediction algorithms microT v4 and microT-CDS, databases of experimentally verified miRNA targets on coding and non-coding RNAs like TarBase v7.0 and LncBase, and software capable of identifying potentially altered molecular pathways by expression of single or multiple miRNAs , mirPath. Provides Web Server (v5.0) to support series of workflows enabling users to perform miRNA analyses.
Proper citation: DIANA Tools (RRID:SCR_018425) Copy
Web service for prediction of SUMOylation sites and SUMO-interaction motifs in proteins by CUCKOO Workgroup.
Proper citation: GPS-SUMO (RRID:SCR_018261) Copy
https://www.flidea.tech/flic-support
R Code used to analyze FLIC data. Functions are provided to examine interactions with food for single well and food choice experiments when fly makes physical contact with liquid food.
Proper citation: R scripts for FLIC data analysis (RRID:SCR_018386) Copy
Portal for information about moderation of social science papers. Home for SocArXiv. Blog and information center. Site hosts announcements of news and developments related to archive, as well as essays that reflect views of listed authors.
Proper citation: SocOpen (RRID:SCR_018384) Copy
Database to facilitate genomic and genetic data distribution, analysis, mining and integration for cucurbits. To store, mine, analyze, integrate and disseminate Cucurbitaceae family datasets and to provide central portal for cucurbit research and breeding community. Central portal for comparative and functional genomics of cucurbit crops.
Proper citation: CuGenDB (RRID:SCR_018401) Copy
https://www.planmeca.com/software/
Software tool as 3D imaging software. Flexible and intuitive all-in-one dental software platform. Provides set of tools to meet imaging needs by any dental facility.
Proper citation: Planmeca Romexis (RRID:SCR_018403) Copy
Web tool for graphical illustrations for biological systems by BioRender. Used for articles and presentations. Collection of pre made icons and templates from life science fields for scientific illustrations. Customized icons possible on request.
Proper citation: Biorender (RRID:SCR_018361) Copy
Web tool implementing positional gene enrichment analysis of gene sets for high resolution identification of over represented chromosomal regions.
Proper citation: Positional Gene Enrichment (RRID:SCR_018360) Copy
https://sedfitsedphat.nibib.nih.gov/software/default.aspx
Software tool for analytical ultracentrifugation developed by Dynamics of Macromolecular Assembly group of Laboratory of Cellular Imaging and Macromolecular Biophysics, National Institute of Biomedical Imaging and Bioengineering, NIH. Used for biophysical analysis of macromolecular assembly.
Proper citation: SEDFIT (RRID:SCR_018365) Copy
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