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https://bioportal.bioontology.org/ontologies/PCL/
Collection of ontology of provisional cells determined by experimental methods.
Proper citation: Provisional Cell Ontology (RRID:SCR_018332) Copy
https://huygens.science.uva.nl/PlotTwist/
Web application for plotting and annotating continuous data. Open source web app for plotting and annotating time series data. Used to inspect data and generate publication quality visualizations. Available options for plotting include lineplot, small multiples and heatmap, summary statistics and inferential statistics.
Proper citation: PlotTwist (RRID:SCR_018331) Copy
https://github.com/BackofenLab/CRISPRcasIdentifier
Software tool providing machine learning approach for identification and classification of CRISPR-Cas systems. Combines regression and classification approaches for improving quality of input protein cassettes and predicting their subtypes.
Proper citation: CRISPRcasIdentifier (RRID:SCR_018296) Copy
https://github.com/timbitz/Whippet.jl
Software tool for analysis of Alternative Splicing events and calculation of weighted transcripts per million values TPM on gene level. RNA-seq analysis method that quantifies AS events of any complexity without loss of accuracy. Used for accurate profiling AS to find misregulation present in human diseases.
Proper citation: Whippet (RRID:SCR_018349) Copy
https://cord-19.apps.allenai.org/
Software tool as full text search engine for COVID-19 Open Research Dataset. Used to explore dataset and identify potential research efforts.
Proper citation: CORD-19 Explorer (RRID:SCR_018341) Copy
https://crowdfightcovid19.org/
Initiative from scientific community to put all available resources including highly skilled scientists at service of fight against COVID-19.
Proper citation: Crowdfight COVID-19 (RRID:SCR_018340) Copy
http://fold.weizmann.ac.il/fldbin/findex
Web tool to predict whether given protein sequence is intrinsically unfolded. Algorithm for predicting ordered and disordered regions in protein based on its primary structure amino acid sequence. Graphic web server to predict if given protein sequence is intrinsically unfolded implementing algorithm of Uversky and co-workers, which is based on average residue hydrophobicity and net charge of sequence.
Proper citation: FoldIndex (RRID:SCR_018390) Copy
https://femtonics.eu/products/
Software package for measurement control and analysis by Femtonics Ltd. Designed in MATLAB and used in field of cellular and network imaging. New version offers new scanning features and improved overall usability.
Proper citation: Measurement Control And Data Analysis Software (RRID:SCR_018309) Copy
Open source web application to create and share documents that contain live code, equations, visualizations and narrative text. Used for data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning.
Proper citation: Jupyter Notebook (RRID:SCR_018315) Copy
http://xray.bmc.uu.se/~alwyn/TAJ/Home.html
Software for visualization of macromolecular structures, atomic coordinates, and 3D intensity maps, and for building macromolecular structures.
Proper citation: O (RRID:SCR_018394) Copy
Portal to discover COVID-19 open research data on Figshare. Figshare collection of COVID-19 related research data.
Proper citation: COVID-19 research data on Figshare (RRID:SCR_018277) Copy
https://www.becker-hickl.com/products/spcm/
Software tool as instrument software for SPC- and DPC Modules by Becker and Hickl GmbH.
Proper citation: SPCM (RRID:SCR_018310) Copy
http://bioinformatics.fh-hagenberg.at/site/index.php?id=17
Software scoring system to identify peptides out of tandem mass spectrometry data using database of known proteins. Universal identification algorithm optimized for high resolution and high accuracy tandem mass spectra. Software tool as peptide and protein identification algorithm developed by Bioinformatics Research Group University of Applied Sciences Upper Austria in close cooperation with group of Karl Mechtler at IMP Vienna, Austria.
Proper citation: MS Amanda (RRID:SCR_018396) Copy
https://atcormedical.com/technology/sphygmocor-xcel/
System for measuring pulse wave velocity, pulse wave analysis by ATCOR. System for noninvasive central blood pressure waveform assessment. Provides measures of central arterial pressure waveform and pulse wave velocity as well as assessment of arterial stiffness via waveform analysis e.g. augmentation index, augmented pressure, and reflected wave magnitude.
Proper citation: ATCOR: SphygmoCor (RRID:SCR_018323) Copy
https://www.itamar-medical.com/professionals/watchpat-300-copy/
System for non-invasive vascular function assessment by Itamar Medical Ltd.
Proper citation: Itamar: EndoPat (RRID:SCR_018322) Copy
http://statistika.mfub.bg.ac.rs/interactive-dotplot/
Web-based tool to create customized interactive graphics, including univariate scatterplots, box plots, and violin plots, for comparing values of continuous variable across different study groups, visualization of subgroups or clusters of non-independent data. Web visualization tool for creating dot plots, box plots and violin plots for small sample size data sets.
Proper citation: Interactive Dotplot (RRID:SCR_018329) Copy
https://lancs.shinyapps.io/ToxBox/
Web tool for creating box plots with dot plots. Boxplot for grouped and clustered data in toxicology. Jittered boxplots for visualizing grouped and clustered data from toxicological studies together with individual raw values and indications of statistical significance.
Proper citation: Jittered Boxplots for Toxicological Data (RRID:SCR_018326) Copy
Resource to aggregate all outbreak information into single location during outbreaks of emerging diseases, such as COVID-19.
Proper citation: outbreak.info (RRID:SCR_018282) Copy
https://discourse.data-against-covid.org/t/list-of-pis-supporting-this-endeavour/124
Group of volunteer data scientists, machines learning experts, bioinformaticians and professional software developers who have joined together to offer their expertise for any data analysis problems that arise in context of ongoing coronavirus pandemic.
Proper citation: Data-Against-COVID Team (RRID:SCR_018288) Copy
Cloud resources for COVID-19 research provided by Rescale, Google Cloud, and Microsoft Azure. High performance computing resources immediately available for COVID-19 research.
Proper citation: Cloud resources for COVID-19 research (RRID:SCR_018286) Copy
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