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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
R/QTLDESIGN Resource Report Resource Website 1+ mentions |
R/QTLDESIGN (RRID:SCR_013424) | software application, software resource | Software application to help plan quantitative trait locus (QTL) experiments. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154598 | https://cran.r-project.org/web/packages/qtlDesign/index.html | SCR_013424 | 2026-09-12 01:02:49 | 9 | |||||||||
|
R package: psy Resource Report Resource Website 1+ mentions |
R package: psy (RRID:SCR_015660) | software resource, software toolkit | Software package implementing various statistical procedures used in psychometry. | r, r package, psychometry, statistical analysis | is listed by: CRAN | Free, Available for download, Runs on Windows, Runs on Mac OS | SCR_015660 | Package ‘psy’, psy: Various procedures used in psychometry, psy | 2026-09-12 01:02:52 | 1 | |||||||||
|
topGO Resource Report Resource Website 1000+ mentions |
topGO (RRID:SCR_014798) | software resource, software toolkit | Software package which provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied. | r, go, go graph, local similarities, software tool, software package, bio.tools |
is listed by: bio.tools is listed by: Debian is listed by: SoftCite works with: Gene Ontology is hosted by: Bioconductor |
Available for download | biotools:topgo | https://bio.tools/topgo | SCR_014798 | 2026-09-12 01:02:51 | 3080 | ||||||||
|
In-Vitro-Sholl Resource Report Resource Website |
In-Vitro-Sholl (RRID:SCR_025662) | software resource, source code | Software R analysis code for analyzing fluorescence microscopy images to determine complexity of cultured astrocytes. Sholl profile analysis based on mixed-effect models. | analyzing fluorescence microscopy images, cultured astrocytes, image, R, Sholl, Sholl profile analysis, mixed-effect models, | PMID:28104486 | Free, Available for download, Freely available, | https://github.com/adrigabzu/sholl_analysis_in_R | SCR_025662 | In vitro astrocyte sholl analysis in R | 2026-09-12 01:04:49 | 0 | ||||||||
|
mwtabR Resource Report Resource Website |
mwtabR (RRID:SCR_014677) | software resource, source code | An R package that downloads and parses mwtab data from Metabolomics Workbench studies. Downloaded files are converted into R lists. | statistical analysis, statistical analysis package, r, r package, metabolomics, parse | is listed by: Metabolomics Workbench | SCR_014677 | R Package for downloading and parsing mwTab files from the Metabolomics Workbench | 2026-09-12 01:03:47 | 0 | ||||||||||
|
ncdfFlow Resource Report Resource Website |
ncdfFlow (RRID:SCR_000009) | software resource | Software package that provides netCDF storage based methods and functions for manipulation of flow cytometry data. | software package, mac os x, unix/linux, windows, r, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor |
Free, Available for download, Freely available | OMICS_05617 | SCR_000009 | ncdfFlow: A package that provides ncdf based storage for flow cytometry data | 2026-09-12 01:06:03 | 0 | ||||||||
|
R package: nlme Resource Report Resource Website 50+ mentions |
R package: nlme (RRID:SCR_015655) | software resource, source code | Software to fit and compare Gaussian linear and nonlinear mixed-effects models. | gaussian, mixed-effects model, r, r package | is listed by: CRAN | Free, Available for download | https://cran.r-project.org/package=nlme | SCR_015655 | 2026-09-12 01:03:58 | 62 |
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