Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Ontology of Medically Related Social Entities Resource Report Resource Website |
Ontology of Medically Related Social Entities (RRID:SCR_003439) | OMRSE | controlled vocabulary, data or information resource, ontology | An ontology covering the domain of social entities that are related to health care, such as demographic information (social entities for recording gender (but not sex) and marital status, for example) and the roles of various individuals and organizations (patient, hospital, etc.) | owl, medicine, health care, demographic |
is listed by: BioPortal is listed by: OBO is listed by: Google Code is related to: Information Artifact Ontology |
Free, Available for download, Freely available | nlx_157534 | http://purl.bioontology.org/ontology/OMRSE, http://purl.obolibrary.org/obo/omrse.owl | SCR_003439 | 2026-09-19 12:50:19 | 0 | |||||||
|
Massachusetts Institute of Technology; Department of Brain and Cognitive Sciences Resource Report Resource Website |
Massachusetts Institute of Technology; Department of Brain and Cognitive Sciences (RRID:SCR_003437) | MIT BCS | data or information resource, department portal, institution, organization portal, portal | MIT's Department of Brain and Cognitive Sciences stands at the nexus of neuroscience, biology and psychology. We combine these disciplines to study specific aspects of the brain and mind including: vision, movement systems, learning and memory, neural and cognitive development, language and reasoning. Together, MIT's Department of Brain and Cognitive Sciences offers extraordinary learning opportunities for undergraduate, graduate and postdoctoral students. Because the human brain is immensely complex in many different ways at once, we pursue every level of inquiry - from molecules to cells to circuits to the mystery of the mind itself. As we study its diseases and disorders, its development and daily feats, like vision, speech, movement and memory, we also integrate methods and insights from every area of brain research. This unusual diversity of expertise fosters an intensely creative atmosphere that sparks startling collaborations. Already known for remarkable contributions to the field, our faculty members continually stretch the limits of knowledge, and bring the same passion to educating our exceptional students. A key part of the BCS mission is to offer its graduate and undergraduate students an educational experience of the highest quality. Our graduate students benefit from the impressive range of our program, and from the ability to participate in research projects with faculty members who are leaders in their fields. The department's undergraduate program, which includes both neuroscience and cognitive science, is one of the fastest-growing majors at MIT. | has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; | Free, Freely available | nif-0000-01995 | https://bcs.mit.edu/ | http://web.mit.edu/bcs/ | SCR_003437 | Massachusetts Institute of Technology; Department of Brain Cognitive Sciences, MIT Dept. of Brain and Cognitive Sciences, MIT Brain and Cognitive Sciences, MIT Department of Brain and Cognitive Sciences | 2026-09-19 12:50:20 | 0 | ||||||
|
ToupView Resource Report Resource Website 10+ mentions |
ToupView (RRID:SCR_017998) | data acquisition software, data processing software, image acquisition software, image processing software, software application, software resource | Software tool that controls microscope camera by Touptek Photomics. Provides functions to fully control camera and present video stream processed by Ultra FineTM color engine at high speed, which includes dedicated pipeline to process raw data into realistic scene. Compatible with ToupCam full series of digital cameras. With authorized license, ToupView software could be used with other cameras which support Twain or DirectShow interface. Used in field of medical microscopic imaging, industrial detection, machine vision, astronomical observation, etc. | Control, microscope, camera, Touptek Photomics, video stream, raw data, imaging | Restricted | SCR_017998 | 2026-09-19 12:53:45 | 13 | |||||||||||
|
Leica: Biosystems RM2265 Fully Automated Rotary Microtome Resource Report Resource Website 10+ mentions |
Leica: Biosystems RM2265 Fully Automated Rotary Microtome (RRID:SCR_018041) | instrument resource | Automated rotary microtome that sections tissue samples. Specimen feed system with zero-backlash and maintenance-free cross roller guides and stepper motor operated coarse feed system are located in dust-proof plastic housing. Equipped with safety handwheel with handle that can be centered, as well as mechanical handwheel lock. In manual operation retraction can be adjusted. In motorized operation retraction value varies with selected sectioning speed. | ABRF, automated microtome, tissue sample sectioning, Leica, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018041.pdf | Model_Number_2265 | https://www.biomarker.hu/sites/default/files/katalogus-fajlok/95.11560_rev_b_brochure_rm2265_en.pdf | SCR_018041 | Leica RM2265 automated microtome | 2026-09-19 12:53:46 | 10 | |||||||
|
Leica: RM2125 RTS Manual Microtome Resource Report Resource Website 1+ mentions |
Leica: RM2125 RTS Manual Microtome (RRID:SCR_018040) | instrument resource | Manual rotary microtome that sections tissue samples. Features include precise feed mechanism, powerBase that ensures stable operation for vibration-free sectioning, advanced knife holder and specimen clamp securely align cutting edge to block, user-selectable coarse feed wheel turn direction and retraction functions, hand wheel, in-built safety guards and rounded shape with arm rests for fatigue-free sectioning,quick-exchange specimen clamp and orientation system for object head allow rapid set up for any block, and two trim steps. | ABRF, paraffin microtome, manual rotary, tissue sample sectionin g, Leica, instrument, equipment | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018040.pdf | Model_Number_RM2125 | https://www.leicabiosystems.com/sites/default/files/media_product-download/2022-01/Leica_RM2125RTS_IFU_2v9M_en.pdf | SCR_018040 | RM 2125 paraffin microtome | 2026-09-19 12:53:46 | 4 | |||||||
|
Thermo Fisher: Applied Biosystems: 3130 Genetic Analyzer Resource Report Resource Website 1+ mentions |
Thermo Fisher: Applied Biosystems: 3130 Genetic Analyzer (RRID:SCR_018046) | instrument resource | Genetic analyzer can run sequencing and fragment analysis applications including microsatellite analysis, AFLP, LOH, SNP validation, and SNP screening. Maintenance time is reduced by eliminating manual syringe washing and filling with automated polymer delivery. Can increase data quality for sequencing and fragment analysis applications by longer read length, and higher resolution with shorter run times. Uses 96- or 384-well plates with four capillary array. | ABRF, genetic analyzer, 4 capillary electrophoresis, DNA sequencer, microsatellite analysis, AFLP, LOH, SNP validation, SNP screening, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018046.pdf | Model_Number_3130 | https://assets.thermofisher.com/TFS-Assets/LSG/manuals/4477796.PDF | SCR_018046 | Applied Biosystems 3130 (4-capillary) Genetic Analyzer, Genetic Analyzer (4 capillary) | 2026-09-19 12:53:46 | 3 | |||||||
|
GE: Biacore 3000 Real Time Biomolecular Interaction Analyzer Resource Report Resource Website 1+ mentions |
GE: Biacore 3000 Real Time Biomolecular Interaction Analyzer (RRID:SCR_018044) | instrument resource | Biacore 3000 processing unit is an established, label-free system for detailed studies of biomolecular interactions. The system delivers comprehensive characterization of the interaction, answers questions about the rate constants, affinity, specificity, and determines the active concentration of components. The ability to recover and transfer interaction partners directly to MALDI targets for identification and further characterization makes the system highly applicable to fast identification of unknown interactants. | ABRF, Real Time Biomolecular Interaction Analyzer, GE Healthcare, instrument, equipment | is listed by: USEDit | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018044.pdf | SCR_019676, SCR_018577, Model_Number_Biacore 3000 | https://www.ibps.sorbonne-universite.fr/ressources/documents/1/2276, Brochure-Biacore-3000.pdf | https://www.gelifesciences.com/en/us/shop/biacore-3000-goldseal-p-02795 | SCR_018044 | BIACORE 3000 GOLDSEAL, BiaCore 3000 Surface Plasmon Resonance | 2026-09-19 12:53:46 | 5 | |||||
|
Agilent: 2100 Bioanalyzer Instrument Resource Report Resource Website 100+ mentions |
Agilent: 2100 Bioanalyzer Instrument (RRID:SCR_018043) | instrument resource | Bioanalyzer system is automated electrophoresis tool that provides an analytical evaluation of various samples types in many workflows, including next generation sequencing NGS, gene expression, biopharmaceutical, and gene editing research. Digital data is provided in timely manner and delivers assessment of sizing, quantitation, integrity and purity from DNA, RNA, and proteins. Minimal sample volumes are required for accurate result, and data may be exported in many different formats. | ABRF, bioanalyzer, electrophoresis, DNA, RNA, protein, data analysis, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018043.pdf | SCR_019389, Model_Number_2100 Bioanalyzer | https://www.agilent.com/cs/library/usermanuals/public/2100_Bioanalyzer_Expert_USR.pdf | SCR_018043 | Agilent 2100 Bioanalyzer, , 2100 Bioanalyzer (Agilent Technologies) | 2026-09-19 12:53:46 | 221 | |||||||
|
Amplipex: KJE-1001 amplifier Resource Report Resource Website 1+ mentions |
Amplipex: KJE-1001 amplifier (RRID:SCR_018017) | instrument resource | Multiplexed biosignal amplifier used to record neural signal by Amplipex Ltd. Related to electrophysiology experiments with multichannel extracellular recordings in freely moving rodents. | Biosignal, amplifier, record neural signal, electrophysiology, moving rodent, Amplipex Ltd | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018017.old | https://www.amplipex.com/brochures/Amplipex_KJE-1001.pdf.old | SCR_018017 | 2026-09-19 12:53:45 | 1 | |||||||||
|
syGlass Resource Report Resource Website 10+ mentions |
syGlass (RRID:SCR_017961) | data analysis software, data processing software, data visualization software, software application, software resource | Software visualization tool for direct volume rendering with no segmentation required. Enables users to view, annotate and analyze 3D data in VR. Data visualization and annotation system that allows rendering of large, volumetric data in its true, three- or four-dimensional form. | Direct, volume, rendering, no segmentation, view, analyze, annotate, 3D, data, large, volumetric, IstoVisio, Inc | Commercially available | SCR_017961 | 2026-09-19 12:53:44 | 16 | |||||||||||
|
NeuroNexus: nDrive Resource Report Resource Website 1+ mentions |
NeuroNexus: nDrive (RRID:SCR_018019) | instrument resource | Microdrive for chronic implantation of neural probe by NeuroNexus. | Microdrive, chronic implantation, neural probe, NeuroNexus, animal surgery, equipment, instrument | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018019.pdf | https://www.neuronexus.com/files/accessories/IST_nDrive_Manual.pdf | SCR_018019 | 2026-09-19 12:53:45 | 1 | |||||||||
|
TCGAbiolinks Resource Report Resource Website 100+ mentions |
TCGAbiolinks (RRID:SCR_017683) | data analysis software, data processing software, software application, software resource | Software R Bioconductor package for integrative analysis with TCGA data.TCGAbiolinks is able to access National Cancer Institute Genomic Data Commons thorough its GDC Application Programming Interface to search, download and prepare relevant data for analysis in R. | Integrative, analysis, TCGA data, cancer, genome, atlas, genomic, analysis, expression, methylated, region, survival plot, phenotype, tumor, epigenomic, alteration, clinical, molecular, retrival | BridgeIRIS ; GENGISCAN ; INNOVIRIS ; Region de Bruxelles Capitale ; Brussels ; Belgium ; São Paulo Research Foundation |
PMID:26704973 DOI:10.12688/f1000research.8923.2 |
Free, Available for download, Freely available | https://github.com/BioinformaticsFMRP/TCGAbiolinks | SCR_017683 | Cancer Genome Atlas (TCGA) biolinks | 2026-09-19 12:53:44 | 112 | |||||||
|
Adobe Photoshop Lightroom Resource Report Resource Website 1+ mentions |
Adobe Photoshop Lightroom (RRID:SCR_018012) | data processing software, image processing software, software application, software resource | Camera raw data processing software. Cloud-based service to edit, organize, store, and share photos across any device. | Data, processing, editing, organizing, storing, sharing, photograph, image | is related to: Adobe Photoshop | Restricted | SCR_018012 | 2026-09-19 12:53:45 | 3 | ||||||||||
|
ISB Cancer Genomics Cloud Resource Report Resource Website 10+ mentions |
ISB Cancer Genomics Cloud (RRID:SCR_017681) | ISB-CGC | data repository, service resource, software resource, storage service resource, web application | Web tool as flexible cloud-based platform for cancer genomics research. Platform that serves as large-scale repository and provides computational infrastructure necessary to carry out cancer genomics research at unprecedented scales. ISB-CGC is providing access to TCGA data and computation on Google Cloud Platform. | Cancer, genomics, repository, data | National Cancer Institute ; National Institutes of Health |
PMID:29092928 | Restricted | SCR_017681 | ISB Cancer Genomics Cloud, Institute for Systems Biology Cancer Genomics Cloud | 2026-09-19 12:53:44 | 11 | |||||||
|
SonarCloud Vulnerable Code Prospector for C Resource Report Resource Website |
SonarCloud Vulnerable Code Prospector for C (RRID:SCR_018011) | SVCP4C | data or information resource, data repository, data set, service resource, storage service resource | Software tool to collect vulnerable source code from open-source repositories linked to SonarCloud. Dataset repository with tagged files with BufferOverflow features associated to source code repositories publicly available. | Repository, SonarCloud, data, dataset, BufferOverflow | DOI:10.3390/app10041270 | Free, Available for download, Freely available | SCR_018011 | SonarCloud Vulnerable Code Prospector for C, SVCP4CDataset | 2026-09-19 12:53:45 | 0 | ||||||||
|
GADMA Resource Report Resource Website 1+ mentions |
GADMA (RRID:SCR_017680) | GADMA | data analysis software, data processing software, software application, software resource | Software tool to implement methods for automatic inferring joint demographic history of multiple populations from genetic data. Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data. | Inferring, demographic, history, population, genetic, data, allele, frequency, spectrum, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
DOI:10.1101/407734 | Free, Available for download, Freely available | biotools:GADMA | https://bio.tools/GADMA | SCR_017680 | Genetic Algorithm for Demographic Model Analysis | 2026-09-19 12:53:44 | 3 | |||||
|
VariantDB Resource Report Resource Website 1+ mentions |
VariantDB (RRID:SCR_018010) | analysis service resource, data or information resource, portal, production service resource, service resource | Web based interactive annotation and filtering platform that automatically annotates variants with allele frequencies, functional impact, pathogenicity predictions and pathway information. Allows filtering by all annotations, under dominant, recessive or de novo inheritance models. Flexible annotation and filtering portal for next generation sequencing data. | Annotation, filtering, portal, next generation, sequencing data, variant, allele frequency, functional impact, pathogenicity prediction, pathway information | Belgian National Fund for Scientific Research-Flanders ; Fondation Leducq |
PMID:25352915 | Restricted | http://www.biomina.be/app/variantdb/ | SCR_018010 | 2026-09-19 12:53:45 | 1 | ||||||||
|
Fusion software Resource Report Resource Website 1+ mentions |
Fusion software (RRID:SCR_017972) | data analysis software, data processing software, software application, software resource | Software for analyzing mouse behavior by Omnitech Electronics Inc. | Analyzing, mouse, behavior, Omnitech Electronics Inc. | SCR_017972 | 2026-09-19 12:53:44 | 4 | ||||||||||||
|
Wafergen: Apollo 324 NGS Library Prep Resource Report Resource Website 1+ mentions |
Wafergen: Apollo 324 NGS Library Prep (RRID:SCR_018027) | instrument resource | Compact benchtop platform that enables rapid and full walk-away automation of next generation sequencing applications. Paired with PrepX reagents, Apollo 324 line offers complete sample-toanswer solution for NGS library prep. Apollo 324 automated protocols and PrepX reagent kits combine liquid handling and proven chemistries to produce high quality libraries for all major NGS platforms. System provides complete, walkaway solution using validated protocols and chemistries that produce consistent libraries for DNA-seq, RNA-seq, and ChIP-seq applications. | ABRF, Library Preparation System, Wafergen Biosystems, next generation sequencing, DNA-seq, RNA-seq, CHIP-seq, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018027.pdf | Model_Number_324 | http://www.thunderbiosci.co.kr/wp-content/uploads/2017/07/Apollo-324_brochure.pdf | SCR_018027 | Apollo 324 NGS Library Prep System, Apollo 324 NGS Library Prep Robot | 2026-09-19 12:53:45 | 1 | |||||||
|
CRISPy-web Resource Report Resource Website 10+ mentions |
CRISPy-web (RRID:SCR_017970) | data access protocol, software resource, web service | Web tool to design sgRNAs for CRISPR applications. Web tool based on CRISPy to design sgRNAs for any user-provided microbial genome. Implemented as standalone web application for Cas9 target prediction. | Design, sgRNA, CRISP, microbial, genome, Cas9, target, prediction, data, guide, single, editing, bio.tools |
is listed by: bio.tools is listed by: Debian |
Novo Nordisk Foundation | PMID:29062934 | Free, Freely available | biotools:crispy | https://bio.tools/crispy | SCR_017970 | single guide RNA desing | 2026-09-19 12:53:44 | 28 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the NIF Resources search. From here you can search through a compilation of resources used by NIF and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that NIF has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on NIF then you can log in from here to get additional features in NIF such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into NIF you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
