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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Simple Behavior Analysis project Resource Report Resource Website |
Simple Behavior Analysis project (RRID:SCR_021411) | data or information resource, portal, project portal | University of Washington project SimBA for analysis of complex social behaviors.Used for automated behavioral scoring. Includes open source software toolkit for computer classification of complex social behaviors in experimental animals. Uses data from popular open source tracking tools in combination with small amount of behavioral annotations to create supervised machine learning classifiers that can then rapidly and accurately score behaviors across different background settings and lighting conditions. | Complex social behaviors classifications, supervised behavioral classifiers development, score behaviors across different background settings, OpenBehavior |
is listed by: OpenBehavior is related to: Simple Behavior Analysis has parent organization: University of Washington; Seattle; USA |
DOI:10.1101/2020.04.19.049452 | Free, Freely available | SCR_021411 | Simple Behavior Analysis, SimBA | 2026-09-03 05:01:10 | 0 | ||||||||
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ezTrack project Resource Report Resource Website |
ezTrack project (RRID:SCR_021418) | data or information resource, portal, project portal | Project related to behavior analysis.Mt.Sinai scientist developed open source video analysis pipeline for investigation of animal behavior.Used to track location, motion, and freezing of animal. | Track animal location, track motion, track animal freezing, OpenBehavior |
is listed by: OpenBehavior is related to: ezTrack has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
DOI:10.1038/s41598-019-56408-9 | Free, Freely available | SCR_021418 | ezTrack | 2026-09-03 05:00:28 | 0 | ||||||||
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DeepLabCut Project Resource Report Resource Website 50+ mentions |
DeepLabCut Project (RRID:SCR_021398) | data or information resource, portal, project portal | Project for markerless pose estimation of user defined body parts with deep learning. | OpenBehavior, animal pose estimation, markerless pose estimation, body parts, multi-animal pose estimation, B-SoID, Stytra, Kinemouse Wheel |
lists: DeepLabCut is listed by: OpenBehavior is related to: Anipose |
DOI:10.1038/s41593-018-0209-y | Free, Available for download, Freely Available | https://github.com/DeepLabCut/DeepLabCut | SCR_021398 | 2026-09-03 05:00:27 | 56 | ||||||||
|
Pyper project Resource Report Resource Website |
Pyper project (RRID:SCR_021431) | data or information resource, portal, project portal | Project related to motion tracking of specimen in open field. Provides software tool for motion tracking.Used to track path of object of interest in live feed from camera or recorded video. Used to track rodents in open field maze as well as retina of mice.New version of Pyper allows to customise image processing to track different kind of objects. | Motion tracking, open field, track path of object, live feed from camera, live feed recorded video, track rodents, open field maze, OpenBehavior |
is listed by: OpenBehavior is related to: Pyper |
Free, Freely available | SCR_021431 | Pyper | 2026-09-03 05:00:28 | 0 | |||||||||
|
FaceMap project Resource Report Resource Website |
FaceMap project (RRID:SCR_021428) | data or information resource, portal, project portal | Project related to videographic processing of head fixed rodent behaviors. Provides software toolbox for unsupervised video analysis of rodent behavior. | Unsupervised video analysis, rodent behavior, videographic processing, head fixed rodent behavior, head fixed rodent, OpenBehavior |
is listed by: OpenBehavior is related to: FaceMap |
DOI:10.1101/306019 | Free, Freely available | SCR_021428 | FaceMap | 2026-09-03 05:00:27 | 0 | ||||||||
|
ZebraTrack project Resource Report Resource Website |
ZebraTrack project (RRID:SCR_021429) | data or information resource, portal, project portal | Project related to distraction free behavioral acquisition. Provides imaging setup for distraction free behavioral acquisition with automated tracking using open source ImageJ software and workflow for extraction of behavioral endpoints of zebrafish. Used for online tracking of larval zebrafish at high framerates.Provides user interface to run experiments as well as flexible design to allow definition of arbitrary open- and closed- loop experiments. | Track freely swimming larval zebrafish, realtime larval zebrafish swimming, larval zebrafish tracking, distraction free behavioral acquisition, behavior measurement, freely moving, OpenBehavior | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2016.07.004 | Free, Freely available | SCR_021429 | ZebraTrack | 2026-09-03 05:00:39 | 0 | ||||||||
|
neurotic project Resource Report Resource Website |
neurotic project (RRID:SCR_021403) | data or information resource, portal, project portal | Project about synchronizing video and neural signals. Provides software Python toolbox for interactive characterization in neuroscience.Software tool used to review and annotate signal data synchronized with video, performs simple initial analyses including signal filtering and spike detection, supports variety of file formats. | Anotate electrophysiology data, interactive characterization, neural data and video, signal data, signal filtering, spike detection, OpenBehavior |
is listed by: OpenBehavior is related to: neurotic |
DOI:10.1523/eneuro.0085-20.2020 | Free, Freely available | SCR_021403 | neurotic, NEUROTIC, NEUROscience Tool for Interactive Characterization | 2026-09-03 05:00:05 | 0 | ||||||||
|
DeepFly3D project Resource Report Resource Website |
DeepFly3D project (RRID:SCR_021400) | data or information resource, portal, project portal | Project related to deep learning based pose estimator for studying how neural circuits control limbed behaviors in tethered Drosophila. Includes Deep Fly image annotation tool for pose estimation and to permit further correction of 2D pose estimates, which are automatically converted to 3D pose. | Image annotation, pose tracking, pose estimation, motor circuit, behavioral measure, accurate 3D pose estimation, OpenBehavior |
is listed by: OpenBehavior is related to: DeepFly3D |
DOI:10.7554/elife.48571 | Free, Freely available | SCR_021400 | DeepFly3D | 2026-09-03 05:00:38 | 0 | ||||||||
|
Live Mouse Tracker analysis Resource Report Resource Website 1+ mentions |
Live Mouse Tracker analysis (RRID:SCR_021505) | LMT analysis | software resource, software toolkit | Software package for Live Mouse Tracker analysis. lmt-analysis provides all analysis tools needed to extract information from tracking performed by live mouse tracker. | Live Mouse Tracker, Live Mouse Tracker data analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Live Mouse Tracker project is related to: Live Mouse Tracker Toolkit Analysis |
PMID:31110290 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/live-mouse-tracker/ | SCR_021505 | , lmt-analysis, live mouse tracker analysis, LMT analysis | 2026-09-03 05:01:11 | 3 | ||||||
|
Camera Control project Resource Report Resource Website |
Camera Control project (RRID:SCR_021569) | data or information resource, portal, project portal, software resource | Portal provides Python based camera software GUI developed by Harvard University scientists. Open source software package that allows video to be recorded in sync with behavior. Python API to record video system timestamps from Imaging Source USB cameras. | Camera software, Python API, record video system timestamps, Imaging Source USB cameras, OpenBehavior |
is listed by: OpenBehavior is related to: Camera Control has parent organization: Harvard University; Cambridge; United States |
Free, Freely available | SCR_021569 | Camera Control | 2026-09-03 05:00:30 | 0 | |||||||||
|
FreemoVR project Resource Report Resource Website 1+ mentions |
FreemoVR project (RRID:SCR_021551) | data or information resource, portal, project portal | Portal related to virtual reality for freely moving animals.Provides virtual reality system set up for unrestrained animals.System developed by University of Frieburg scientists. This Virtual Reality system can be used with number of different species including mice, zebrafish, and Drosophila. | Virtual reality system, unrestrained animals, behavior, brain function, OpenBehavior |
is listed by: OpenBehavior is related to: FreemoVR has parent organization: University of Freiburg; Baden-Wurttemberg; Germany |
DOI:10.1038/nmeth.4399 | Free, Freely available | SCR_021551 | FreemoVR | 2026-09-03 05:00:29 | 2 | ||||||||
|
Automated Rodent Tracker Resource Report Resource Website |
Automated Rodent Tracker (RRID:SCR_021510) | ART | data processing software, software application, software resource | Software tool to automatically track rodent position and movement.Used to track head movements, body movements and also aspects of body size. It is able to identify certain behaviours from video footage too, such as rotations, moving forwards, interacting with objects and staying still. | Track rodent position, track movement, track head movements, track body movements, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Rodent Tracker project |
DOI:10.1016/j.jneumeth.2017.04.006 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/automated-rodent-tracker-art/ | SCR_021510 | 2026-09-03 05:00:07 | 0 | |||||||
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Dual port Lick Detector project Resource Report Resource Website |
Dual port Lick Detector project (RRID:SCR_021454) | data or information resource, instrument resource, portal, project portal | Project related to measuring licking behavior in mice.System includes device used for both real time measurement and manipulation of licking behavior in head fixed mice. System provides distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector. | Building lick detector files, lick detector, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Dual Port Lick Detector |
DOI:10.1152/jn.00500.2018 | Free, Freely available | SCR_021454 | Dual port Lick Detector | 2026-09-03 04:58:33 | 0 | ||||||||
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Cerebro Wireless Optogenetic System project Resource Report Resource Website |
Cerebro Wireless Optogenetic System project (RRID:SCR_021474) | data or information resource, instrument resource, portal, project portal | Project related to wireless controlled optogenetic stimulation. Provides system for wireless optogenetic stimulation developed in Karpova Lab with ability to be customized.Features Cerebro,rechargeable, battery powered wireless receiver;head implant containing optical fibers and two independent laser diodes; base station for transmitting radio signals to Cerebro, controlled by Windows computer via USB or by TTL; charging dock; and Xavier, user friendly GUI for sending and logging base station commands. | Wireless optogenetic stimulation, Janelia open source hardware, Janelia open source software, Cerebro battery powered wireless receiver, head implant, Xavier, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021474 | Cerebro Wireless Optogenetic System | 2026-09-03 04:58:15 | 0 | |||||||||
|
4 Port Nose Poke Resource Report Resource Website |
4 Port Nose Poke (RRID:SCR_021592) | data or information resource, instrument resource, portal, project portal | Portal provides open source nose poke system utilizing Arduino microcontroller, several low cost electronic components, and PVC behavioral arena. System developed by University of Basel scientists for use in behavior experiments. | Instrument, motor behavior, behavioral arena, nose poke system, Arduino microcontroller, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of Basel; Basel; Switzerland |
DOI:10.1016/j.mex.2016.04.002 | Free, Freely available | SCR_021592 | 2026-09-03 04:58:34 | 0 | |||||||||
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Open Source platform for Sensory Tasks project Resource Report Resource Website |
Open Source platform for Sensory Tasks project (RRID:SCR_021468) | data or information resource, instrument resource, portal, project portal | Project related to report animal decision in response to stimulus.Includes software tool as Arduino and Python based platform for Go or No Go sensory task to report animal decision in response to stimulus provided by University of Melbourne, Melbourne, VIC, Australia scientists. | Go or No Go sensory task, report animal decision, stimulus response, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.3389/fncel.2017.00156 | Free, Freely available | SCR_021468 | Open Source platform for Sensory Tasks | 2026-09-03 04:58:28 | 0 | ||||||||
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DeepEthogram Resource Report Resource Website 1+ mentions |
DeepEthogram (RRID:SCR_022355) | DEG | data analysis software, data processing software, software application, software resource | Software tool to extract relevant features from images and use time series of these features to classify whether given behavior is present in each frame of video recording.machine learning pipeline for supervised behavior classification from raw pixels. Performs action recognition ,automated behavior classification, over frames. Used for automated behavior classification to detect and track behavior over time. | OpenBehavior, behavioral data analysis, video analysis, offline analysis software, behavior measurement, supervised behavior classification from raw pixels | is listed by: OpenBehavior | DOI:10.7554/eLife.63377 | Free, Available for download, Freely available | https://github.com/jbohnslav/deepethogram | SCR_022355 | 2026-09-03 04:58:47 | 6 | |||||||
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MRI Compatible Microdrive Resource Report Resource Website |
MRI Compatible Microdrive (RRID:SCR_022352) | data or information resource, instrument resource, portal, project portal | MRI compatible microdrive that can precisely position electrodes without causing significant imaging artifacts. | OpenBehavior, Instrument, device, microdrive, neural signal analysis, neural recording, electrical recording, electrode precisely positioning, MRI compatible equipment | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0495-20.2021 | Free, Freely available | https://osf.io/tnpmk/ | SCR_022352 | 2026-09-03 04:58:37 | 0 | ||||||||
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DeepBhvTracking Resource Report Resource Website 1+ mentions |
DeepBhvTracking (RRID:SCR_022351) | data analysis software, data processing software, software application, software resource | Software tool as novel tracking algorithm that combines deep learning and background subtraction. | OpenBehavior, movement tracking, locomotion and environmental interaction measure, behavior tracking method for laboratory animals | is listed by: OpenBehavior | DOI:10.3389/fnbeh.2021.750894 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/deepbhvtracking/ | SCR_022351 | 2026-09-03 04:58:26 | 1 | ||||||||
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Neonatal Stereotaxic Mouse Adaptor Resource Report Resource Website |
Neonatal Stereotaxic Mouse Adaptor (RRID:SCR_022349) | data or information resource, instrument resource, portal, project portal | 3D printed device for stereotaxic viral delivery into brains of neonatal mice.Used for stable and precise stereotaxic surgery in neonatal mice. | OpenBehavior, Instrument, 3D printed device, stable and precise 3D printed device for stable and precise stereotaxic surgery in neonatal mice, stereotaxic surgery, neonatal mice | is listed by: OpenBehavior | DOI:10.2144/btn-2020-0050 | Free, Freely available | SCR_022349 | 2026-09-03 04:58:45 | 0 |
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