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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Generation R Pediatric MRI Resources Resource Report Resource Website 10+ mentions |
Generation R Pediatric MRI Resources (RRID:SCR_014114) | data or information resource, image collection | An MRI resource which provides age-appropriate images of children. It includes an average, age-appropriate T1-weighted image, constructed from 130 typically developing children ages 6-to-10 and a set of 32 resting-state ICA components. These components were generated from 494 typically developing children, ages 6-to-10 years old, using the MELODIC ICA tool, bootstrapped with 1000 resamples. Both of these resources are described in detail in a manuscript submitted for publication. | image collection, mri, children, ti weighted | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | SCR_014114 | 2026-09-12 12:58:12 | 15 | |||||||||||
|
Northwestern University Schizophrenia Data and Software Tool (NUSDAST) Resource Report Resource Website |
Northwestern University Schizophrenia Data and Software Tool (NUSDAST) (RRID:SCR_014153) | NUSDAT | data or information resource, database, image collection | A repository of schizophrenia neuroimaging data collected from over 450 individuals with schizophrenia, healthy controls and their respective siblings, most with 2-year longitudinal follow-up. The data include neuroimaging data, cognitive data, clinical data, and genetic data. | database, neuroimaging, clinical, cognitive, genetic, schizophrenia, longitudinal |
uses: CAWorks is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Northwestern University; Illinois; USA |
Schizophrenia | NIMH 1R01 MH084803; NIMH 1U01 MH097435; NIMH P50 MH071616; NIMH R01 MH056584; NCRR P41 RR15241; NIGMS U24 GM104203; NIH Bio-Informatics Research Network Coordinating Center |
Available to the research community | SCR_014153 | Northwestern University Schizophrenia Data and Software Tool | 2026-09-12 12:58:13 | 0 | ||||||
|
NiiStat Resource Report Resource Website 50+ mentions |
NiiStat (RRID:SCR_014152) | data analysis software, data processing software, software application, software resource, source code | A set of Matlab scripts for analyzing neuroimaging data from clinical populations. The NiiStat tools are designed to correlate behavioral data (task performance) with brain imaging data. | matlab script, source code, data analysis, neuroimaging data, clinical population |
uses: MATLAB is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Medical University of South Carolina; South Carolina; USA |
Available to the research community | http://www.nitrc.org/plugins/mwiki/index.php/niistat:MainPage | SCR_014152 | 2026-09-12 12:58:13 | 88 | |||||||||
|
PsyGeNET Resource Report Resource Website 10+ mentions |
PsyGeNET (RRID:SCR_014406) | data analysis software, data or information resource, data processing software, database, software application, software resource | Knowledge platform on psychiatric disorders and their genes. Resource for exploratory analysis of psychiatric diseases and their associated genes. PsyGeNET is composed of database and set of analysis tools and is the result of the integration of information from DisGeNET and data extracted from the literature by text mining, followed by curation by domain experts. | psychiatric disease, associated gene, database, analysis tool, bio.tools |
is used by: DisGeNET is listed by: Debian is listed by: bio.tools |
Psychiatric disorder | DOI:10.1093/bioinformatics/btv301 | Available for the research community | biotools:psygenet2r | https://bio.tools/psygenet2r | SCR_014406 | Psychiatric disorders Gene association NETwork, Psychiatric disorders Gene association Network | 2026-09-12 12:58:16 | 11 | |||||
|
Lifestyle Interventions for Expectant Moms (LIFE-Moms) Resource Report Resource Website |
Lifestyle Interventions for Expectant Moms (LIFE-Moms) (RRID:SCR_014376) | LIFE-Moms | data or information resource, organization portal, portal, resource | A consortium whose overall goal is to identify effective behavioral and lifestyle interventions that will improve weight, glycemic control and other pregnancy-related outcomes in obese and overweight pregnant women, and determine whether these interventions reduce obesity and metabolic abnormalities in their children. The study/consortium is comprised of seven clinical centers, with each clinical center conducting its own trial. Additional information on the consortium and individual trials is located in the Consortium Summaries tab. | pregnant, pregnancy, obesity, metabolic abnormality, behavioral intervention, lifestyle intervention, clinical trial |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources |
Obesity | NIDDK ; NHLBI ; NICHD ; National Center for Complementary and Integrative Health ; Office of Research on Womens Health ; Office of Behavioral and Social Sciences Research |
Synopses available, Users may access trial data at clinicaltrial.gov | http://www.niddk.nih.gov/research-funding/research-resources/Pages/default.aspx | SCR_014376 | Lifestyle Interventions for Expectant Moms | 2026-09-12 12:58:16 | 0 | |||||
|
GUID Tool Resource Report Resource Website 1+ mentions |
GUID Tool (RRID:SCR_014530) | data access protocol, software resource, web service | A customized software application that generates a Global Unique Identifier for each study participant. The GUID is a universal subject ID that allows researchers to share data specific to a study participant without exposing personally identifiable information (PII). The GUID has been approved by the NIH Office of General Counsel. | web service, universal subject id | is hosted by: NIMH Data Archive | For use when collaborating and sharing information | SCR_014530 | 2026-09-12 12:58:18 | 3 | ||||||||||
|
LANDMark BioBanks Resource Report Resource Website 1+ mentions |
LANDMark BioBanks (RRID:SCR_014534) | biobank, biospecimen repository, data or information resource, data set, material storage repository, service resource, storage service resource | A repository of human tissue samples collected during the LANDMark study (Longitudinal Assessment of Neuropathy in Diabetes using novel ophthalmic markers). The LANDMark Biobank longitudinal dataset contains blood and tissue (skin) samples and matching detailed phenotypic data of three microvascluar complications of type 1 diabetes: neuropathy, nephropathy and retinopathy. | biospecimen repository, data set, type 1 diabetes, biobank, human tissue, landmark study, longitudinal data set, blood, skin, neuropathy, nephropathy, retinopathy | is listed by: NIDDK Information Network (dkNET) | Type 1 diabetes, Diabetes | Available to the research community, Apply to the Tissue Access Committee to access tissue samples | SCR_014534 | 2026-09-12 12:58:18 | 2 | |||||||||
|
Cell Line Authentication Testing Resource Report Resource Website 1+ mentions |
Cell Line Authentication Testing (RRID:SCR_014504) | CLA | quality control testing; authentication testing | A material analysis service of the commercial organization Genetica DNA Laboratories which provides authentication of human cancer cell lines, stem cell lines and xenografts utilizing STR DNA technology. | str profiling, cell line authentication, genetica, cancer cell line, stem cell line, xenograft | is related to: Genetica DNA Laboratories | PMID:20614197 | Available to the research community, Commercial | SCR_014504 | Genetica DNA Laboratories Cell Line Authentication, cell line identification testing; cell authentication | 2026-09-12 12:58:17 | 4 | |||||||
|
BRAINS Imagebank Resource Report Resource Website 10+ mentions |
BRAINS Imagebank (RRID:SCR_014576) | data or information resource, database, image collection | A searchable collection of anonymised images and associated clinical data. It includes normal individuals at all ages (from prenatal to old age). The image bank contains integrated data sets already collected as part of research studies which include control subjects. New data is added as they become available. | database, image collection, brain, normal, control, human, integrated data set | is hosted by: University of Edinburgh; Scotland; United Kingdom | Registration required | SCR_014576 | Brain Images of Normal Subjects (BRAINS) Imagebank, Brain Images of Normal Subjects Imagebank | 2026-09-12 12:58:18 | 12 | |||||||||
|
iBRAIN Resource Report Resource Website 1+ mentions |
iBRAIN (RRID:SCR_014691) | group | Brain research group affiliated with the Nanjing University of Aeronautics and Astronautics (NUAA) in China. The main research interests of iBRAIN include developing methods in machine learning, data mining, neural computation, and related areas for decoding brain functions or recognizing brain disease. Research related code and datasets can be found on the main site. | brain, human brain, brain disease, brain research, group, brain research group, machine learning, data mining, neural computation | Brain disease | Public | SCR_014691 | Intelligence BRain Analysis through Images and Networks (iBRAIN), Intelligence BRain Analysis through Images and Networks, Intelligence Brain Analysis Through Images and Networks | 2026-09-12 12:58:20 | 6 | |||||||||
|
Annmap Resource Report Resource Website 1+ mentions |
Annmap (RRID:SCR_011783) | Annmap | data or information resource, database, software resource | A genome browser that includes mappings between genomic features and Affymetrix microarrays. Associated with annmap is: * a Bioconductor package, annmap that provides programmatic access to the underlying MySQL database tables (which are freely available for download on this site) * xmapbridge, a Bioconductor package that outputs numeric data in a form suitable for presentation in the browser. This is supported by XMapBridge, a Java client that sits on the local desktop and performs the graph rendering for the browser. | is listed by: OMICtools | Cancer Research UK ; Cancer Research UK Manchester Institute |
OMICS_00900 | SCR_011783 | 2026-09-12 12:57:39 | 6 | |||||||||
|
Vestische Children and Youth Clinic Dates; North Rhine-Westphalia; Germany Resource Report Resource Website |
Vestische Children and Youth Clinic Dates; North Rhine-Westphalia; Germany (RRID:SCR_011759) | hospital |
is related to: EMIF has parent organization: Witten/Herdecke University; North Rhine-Westphalia; Germany |
SCR_011759 | Vestische Kinder- und Jugendklinik Datteln, Vestische Children and Youth Clinic Dates | 2026-09-12 12:57:39 | 0 | ||||||||||||
|
TFClass Resource Report Resource Website 10+ mentions |
TFClass (RRID:SCR_012018) | TFClass | controlled vocabulary, data or information resource, database, ontology | Database that classifies human transcription factors based on the characteristics of their DNA-binding domains. It comprises six levels (superclasses, classes, families, subfamilies, genera and factor species), two of which are optional (subfamilies and factor species). The full classification can also be obtained as html document and as ontology in obo-format., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | transcription factor, dna-binding domain, obo | is listed by: OMICtools | BMBF ; European Union FP7 LipidomicNet 202272; European Union FP7 SysCol 258236; DFG FKZ0315890B |
PMID:23180794 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01864 | SCR_012018 | Classification of Human Transcription Factors | 2026-09-12 12:57:43 | 13 | |||||
|
BioSeek Resource Report Resource Website 1+ mentions |
BioSeek (RRID:SCR_012224) | BioSeek | access service resource, commercial organization, core facility, service resource | BioSeek is a drug discovery services company that applies human primary cell assays and predictive disease models to the discovery and development of human therapeutics and safer chemicals. BioSeek improves the success rate of drug discovery and development by integrating human biology from the earliest stages of drug discovery onward through its unique BioMAP??????? platform. Our mission is to accelerate drug compound validation and enable our clients to take safer and more effective products into the market. | is listed by: ScienceExchange | SciEx_10852 | SCR_012224 | 2026-09-12 12:57:46 | 7 | ||||||||||
|
Clinical Trials in Organ Transplantation in Children (CTOT-C) Resource Report Resource Website 1+ mentions |
Clinical Trials in Organ Transplantation in Children (CTOT-C) (RRID:SCR_015860) | CTOT-C | consortium, data or information resource, organization portal, portal, project portal | Project portal for a cooperative research program sponsored by the National Institute of Allergy and Infectious Diseases (NIAID). CTOT-C is an investigative consortium for conducting clinical and associated mechanistic studies that will lead to improved outcomes for pediatric heart, lung, or kidney transplant recipients. | heart, kidney, lung, pediatric, cooperative research program, niaid, clinical study, mechanistic study, transplant |
is listed by: NIDDK Information Network (dkNET) is related to: Clinical Trials in Organ Transplantation (CTOT) |
NIAID UM2 AI117870 | Public, Available to the scientific community | SCR_015860 | NIAID Clinical Trials in Organ Transplantation in Children, Clinical Trials in Organ Transplantation in Children, NIAID CTOT-C | 2026-09-12 12:58:31 | 1 | |||||||
|
m6ASNP: Annotation of genetic variants by m6A function Resource Report Resource Website 1+ mentions |
m6ASNP: Annotation of genetic variants by m6A function (RRID:SCR_016048) | data access protocol, data analysis software, data processing software, data visualization software, software application, software resource, web service | Web server implemented in JAVA and PHP for annotating genetic variants by m6A function. It predicts and annotates N6-methyladenosine (m6A) alterations from genetic variants data such as germline SNPs or cancer somatic mutations. It employs two accurate prediction models for human and mouse using Random Forest algorithm. It conducts a statistical analysis for all the predicted m6A alterations. Provides statistical diagrams and a genome browser to visualize the topology characteristics of predicted m6A alterations. | N6-methyladenosine (m6A), variant annotation, effect prediction, random forest, miclip, m6a, mutant | China Postdoctoral Science Foundation 2017M622864; Fundamental Research Funds for the Central Universities No. 17lgpy106; Guangdong Natural Science Foundation 2014TQ01R387; National Key Research and Development Program 2017YFA0106700; National Natural Science Foundation of China 31771462 |
PMID:29617790 DOI:10.1093/gigascience/giy035 |
Free, Available for download, Freely available | https://github.com/RenLabBioinformatics/m6ASNP | SCR_016048 | m6ASNP | 2026-09-12 12:58:34 | 3 | |||||||
|
Localite TMS Navigator Resource Report Resource Website 1+ mentions |
Localite TMS Navigator (RRID:SCR_016126) | resource | An instrument. Navigation system for transcranial magnetic stimulation (TMS). | hardware, instrument, equipment, tms, neuroimaging, neuroscience, neurology, transcranial, magnetic, stimulation | SCR_016126 | 2026-09-12 12:58:35 | 4 | ||||||||||||
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University of California San Diego - University of California Los Angeles Diabetes Research Center Resource Report Resource Website |
University of California San Diego - University of California Los Angeles Diabetes Research Center (RRID:SCR_015100) | access service resource, data or information resource, disease-related portal, portal, resource, service resource, topical portal | Research center across five institutions for clinical research in diabetes. Collaborators include UC San Diego's School of Medicine, Salk Institute, Cedars-Sinai Medical Center, UC Los Angeles' School of Medicine, and LA Biomedical Research Center. | diabetes research, research collaboration, research network, metabolic research, southern california |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Diabetes Research Centers is parent organization of: University of California San Diego - University of California Los Angeles Diabetes Research Center Human Genetics Core Facility is parent organization of: University of California San Diego - University of California Los Angeles Diabetes Research Center Targeted Pathway Analysis Core Facility is parent organization of: University of California San Diego - University of California Los Angeles Diabetes Research Center Genomics and Epigenetics Core Facility is parent organization of: University of California San Diego - University of California Los Angeles Diabetes Research Center Transgenic and Knockout Mouse Core Facility is parent organization of: University of California San Diego - University of California Los Angeles Diabetes Research Center Metabolic and Molecular Physiology Core Facility has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center Transgenic and Knockout Mouse Core Facility has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center Metabolic and Molecular Physiology Core Facility has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center Genomics and Epigenetics Core Facility has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center Human Genetics Core Facility has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center Targeted Pathway Analysis Core Facility is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK P30DK063491 | Available to the research community | http://derc.ucsd.edu/index.html | SCR_015100 | 2026-09-12 12:58:25 | 0 | |||||||
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University of Alabama at Birmingham Diabetes Research Center Resource Report Resource Website |
University of Alabama at Birmingham Diabetes Research Center (RRID:SCR_015107) | access service resource, data or information resource, disease-related portal, portal, resource, service resource, topical portal | Research center which operates in collaboration with the University of Alabama Birmingham Comprehensive Diabetes Center to promote excellence in diabetes research and patient care. The DRC supports the areas of animal physiology, human biology and intervention and translational research. It focuses on developing new methods to treat, prevent, and ultimately cure diabetes and its complications. | diabetes, animal physiology, human biology |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Diabetes Research Centers has parent organization: University of Alabama at Birmingham; Alabama; USA is parent organization of: University of Alabama at Birmingham Diabetes Research Center Interventions and Translation Core is parent organization of: University of Alabama at Birmingham Diabetes Research Center Administrative Core Facility is parent organization of: University of Alabama at Birmingham Diabetes Research Center Animal Physiology Core Facility is parent organization of: University of Alabama at Birmingham Diabetes Research Center Human Physiology Core Facility is parent organization of: University of Alabama at Birmingham Diabetes Research Center Bioanalytical REDOX Biology Core Facility has organization facet: University of Alabama at Birmingham Diabetes Research Center Administrative Core Facility has organization facet: University of Alabama at Birmingham Diabetes Research Center Animal Physiology Core Facility has organization facet: University of Alabama at Birmingham Diabetes Research Center Bioanalytical REDOX Biology Core Facility has organization facet: University of Alabama at Birmingham Diabetes Research Center Human Physiology Core Facility has organization facet: University of Alabama at Birmingham Diabetes Research Center Interventions and Translation Core is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK DK079626 | Available to the research community, Acknowledgement requested | SCR_015107 | 2026-09-12 12:58:25 | 0 | ||||||||
|
Michigan Diabetes Research Center Resource Report Resource Website 1+ mentions |
Michigan Diabetes Research Center (RRID:SCR_015112) | MDRC | access service resource, core facility, service resource | Multidisciplinary unit of the University of Michigan funded by the National Institute of Diabetes and Digestive and Kidney Diseases/National Institute of Health. Promotes new discoveries and enhance scientific progress through the support of basic and clinical research related to diabetes, its complications, and related disorders. Creates environment that supports innovative research; attracts and retains early stage investigators and investigators new to diabetes research; provides core services that leverage funding and unique expertise; fosters interdisciplinary collaborations; raises awareness and interest in fundamental and clinical diabetes research at their institutions, as well as locally, regionally, and nationally. | clinical diabetes research, multidisciplinary research, endocrine and metabolic disorders, |
is listed by: NIDDK Information Network (dkNET) has organization facet: Michigan Diabetes Research Center Administrative Core Facility has organization facet: Michigan Diabetes Research Center Clinical Core Facility has organization facet: Michigan Diabetes Research Center Microscopy and Image Analysis Core Facility has organization facet: Michigan Diabetes Research Center Molecular Genetics Core Facility has organization facet: Michigan Diabetes Research Center Animal Studies Core is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK P30DK020572 | Restricted | http://diabetesresearch.med.umich.edu | SCR_015112 | Michigan Diabetes Research Center (MDRC) | 2026-09-12 12:58:25 | 4 |
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