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http://purl.bioontology.org/ontology/HPIO

Ontology for host pathogen interactions in farmed animals

Proper citation: Host Pathogen Interactions Ontology (RRID:SCR_007647) Copy   

•   Source: SciCrunch Registry

http://www.informatics.jax.org/searches/AMA_form.shtml

Ontology that organizes anatomical structures for the adult mouse (Theiler stage 28) spatially and functionally, using ''is a'' and ''part of'' relationships. The ontology is used to describe expression data for the adult mouse and phenotype data pertinent to anatomy in standardized ways. The browser can be used to view anatomical terms and their relationships in a hierarchical display.

Proper citation: Adult Mouse Anatomy Ontology (RRID:SCR_006568) Copy   

•   Source: SciCrunch Registry

https://genenames.org

Only worldwide authority that provides standardized nomenclature, i.e. gene names and symbols (short form abbreviations), for all known human genes, and stores all approved symbols in the HGNC database. Approved human gene nomenclature. Database of gene symbols and names. Manually curated genes into groups based on shared characteristics such as homology, function or phenotype. Data for protein-coding genes, pseudogenes and non-coding RNAs.

Proper citation: HGNC (RRID:SCR_002827) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ICNP

Ontology of the international classification for nursing practice.

Proper citation: International Classification for Nursing Practice (RRID:SCR_003099) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SPD

An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).

Proper citation: Spider Ontology (RRID:SCR_003117) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/IXNO

Ontology to enable curation of chemical-gene and chemical-protein interactions for the Comparative Toxicogenomics Database (CTD), a freely available resource that aims to promote understanding and novel hypothesis development about the effects of the environment on human health.

Proper citation: Interaction Ontology (RRID:SCR_003055) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SBOL

Ontology to represent standardized graphical notation for synthetic biology.

Proper citation: Synthetic Biology Open Language Visual Ontology (RRID:SCR_001261) Copy   

•   Source: SciCrunch Registry

https://blog.phenoscape.org/2008/05/14/the-teleost-taxonomy-ontology/

An ontology of taxonomic terms (names of taxonomic groups) used in the systematics of fish, including non-teleost groups such as Chondrichthys (sharks and rays), Sarcopterygii (lungfish and coelacanths), lampreys, and hagfish. It contains (as of August 2010) over 38,500 names, and over 44,000 taxonomic synonyms. A majority of the taxonomic names and synonyms were made available from the Catalog of Fishes. In July 2010 they added nearly 15,000 common names provided by Fishbase. Additional names and synonyms are added as a result of their curation activities. The ontology is being used to facilitate annotation of phenotypes, particularly for taxa that are not covered by NCBI because no submissions of molecular data have been made. Taxonomy ontologies can also be valuable in annotating legacy data, where authors make phenotype or ecological assertions (e.g., host-parasite associations) that refer to groups that are reorganized or no longer recognized. The taxonomy ontology serves as the source of taxa for their project's use for identifying evolutionary changes that match the phenotype of a zebrafish mutant.

Proper citation: Teleost Taxonomy Ontology (RRID:SCR_001611) Copy   

•   Source: SciCrunch Registry

http://aclame.ulb.ac.be/Classification/mego.html

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Gene Ontology dedicated to the functions of mobile genetic elements. The terms defined are used to annotate phage and plasmid protein families in ACLAME. Note: The phage ontology PhiGO has now been incorporated in MeGO and can thus be accessed in MeGO version 1.0 and up.

Proper citation: MeGO (RRID:SCR_000110) Copy   

•   Source: SciCrunch Registry

http://environmentontology.org/

Community ontology for the concise, controlled description of environmental features and habitats. It provides a structured vocabulary that is designed to support the annotation of any organism or biological sample with environment descriptors. EnvO contains terms for biomes, environmental features, and environmental material.

Proper citation: EnvO (RRID:SCR_000182) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/CTONT

Ontology of clinical trial terminology.

Proper citation: Epoch Clinical Trial Ontology (RRID:SCR_000366) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/VSAO

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. An anatomy ontology covering the vertebrate skeletal system that integrates terms for skeletal cells, tissues, biological processes, organs (skeletal elements such as bones and cartilages), and subdivisions of the skeletal system.

Proper citation: Vertebrate Skeletal Anatomy Ontology (RRID:SCR_000313) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/RNPRIO

Ontology for Inventories of Clinical Data Research Networks, Patient-Powered Research Networks, and Patient Registries

Proper citation: Research Network and Patient Registry Inventory Ontology (RRID:SCR_000308) Copy   

•   Source: SciCrunch Registry

https://github.com/information-artifact-ontology/IAO

An ontology of information entities, originally driven by work by the OBI digital entity and realizable information entity branch. Please note: The ontology metrics displayed by BioPortal do not distinguish IAO-developed terms from terms imported from other ontologies.

Proper citation: Information Artifact Ontology (RRID:SCR_000477) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NIC

Ontology of nursing interventions classification.

Proper citation: Nursing Interventions Classification (RRID:SCR_000911) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ICPC2P

Ontology of the international classification of primary care -2 PLUS

Proper citation: International Classification of Primary Care - 2 PLUS (RRID:SCR_000909) Copy   

•   Source: SciCrunch Registry

http://www.stanford.edu/

Private, non profit university in Stanford, California, USA for research and undergraduate and graduate studies. Known for its academic strength, wealth, proximity to Silicon Valley, and ranking as one of the world's top universities. Particularly noted for its entrepreneurship and is one of the most successful universities in attracting funding for start-ups.

Proper citation: Stanford University; Stanford; California (RRID:SCR_011538) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ADO

An open, public ontology representing relevant knowledge on Alzheimer's disease.

Proper citation: Alzheimer's disease ontology (RRID:SCR_010289) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/FAO

A structured controlled vocabulary for the anatomy of fungi.

Proper citation: Fungal Gross Anatomy Ontology (RRID:SCR_010322) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/EHDAA

A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just ''heart'' really means ''heart (CS 9-20)''. Timing details will be added to the abstract version of the ontology in a future release.

Proper citation: Human Developmental Anatomy Ontology abstract version 1 (RRID:SCR_010323) Copy   

•   Source: SciCrunch Registry