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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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PSORT II Resource Report Resource Website 10+ mentions |
PSORT II (RRID:SCR_018772) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web tool for prediction of protein sorting signals and localization sites in amino acid sequencies. Recommended for animal/yeast sequences. Analyzes input sequence by applying stored rules for various sequence features of known protein sorting signals to report possiblity for input protein to be localized at each candidate site with additional information. | Protein sorting signal prediction, protein localization site, localization site prediction, amino acid sequence, sequence analysis, protein sorting signal | is related to: Psort | Free, Freely available | https://psort.hgc.jp/, https://www.psort.org/ | SCR_018772 | prediction of protein sorting signals and localization sites in amino acid sequencies, psort2, psort II | 2026-09-12 12:59:05 | 49 | ||||||||
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Beckman Coulter: Life Sciences MoFlo Astrios EQ Cell Sorter Resource Report Resource Website 10+ mentions |
Beckman Coulter: Life Sciences MoFlo Astrios EQ Cell Sorter (RRID:SCR_018893) | instrument resource | High speed flow cytometry sorter. | Beckman Coulter, MoFlo Astrios, cell sorter, high speed cell sorter, instrument, equipment | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_018893.pdf | https://bec-techdocs-prod.s3.us-west-2.amazonaws.com/techdoc/files/ifu/en/B22986EB.pdf?AWSAccessKeyId=ASIA2KJI7HMZ2LIVGGKQ&Expires=1714677977&Signature=NUhKRS0AmHkKA8B0w8HjLbJKEwA%3D&x-amz-security-token=IQoJb3JpZ2luX2VjEAoaCXVzLXdlc3QtMiJHMEUCIEx6nFrj%2FnqQlzHXnA3IEIEojJvZpacwr6mpjViWWJTgAiEAzf0qI2V844ONFBygXgWQGvW3sp6U15S4zbvNTu8elbMq%2BgIIYxAEGgw3MDkyOTI0MDc2MDMiDKy2KN600BLxzSXZ9CrXArQAhXoDa7HakRWxTvFeJnE7Y6XRHdaq3Opce4UsXYCd9ifVecXBHIa%2FMl6SmmJn%2Ff6YB8lPieTfcZ2AGsJvsq61KpgLzz0mDDZmZ%2BJ6SQ8JBkKLaX9ldL%2FgZT3%2FJjjTnjldGXuAnXEcE5guzvUAsZKClU%2FNd82fAzcw0qojPzaS8kREVxW6gieieMNfqMk80NKwhNOfPiu%2FZZ%2F0CRk47wtO7zRb75Wngh%2BKrudOC4lMRnXSmyg1jDWbdm7X8wxJJkTaqtsnwtdjW3t0Q08G3OPPQF8JukVrva3A1JhCWx0d1lzB3ysc3wNE5TAtSvxdWldGyHvABiAthK84dHaAFhE4dYespF0MyB1zdQrB6GQUcT7MWG2p%2BATXd%2FWMku5Yw%2Ba4D1PpP1z89SwFp8LrcYQJmnoNk6JgfTBofY7wRs4H5mn3AOk8aEXcdqMt%2FEUP5Y2woAGtgC8wkJ7PsQY6ngEOXPlGjJzzEpvu4oBQzCGRY9JUbk5514ZEYBhZz5%2FClFdDzI84cDMvcbC28pPRLHy6Lb07ciE%2FhMZtS1JmFrxAlCud78kMh%2BOfBs6HczpQu9KZuc9LSykM8SNL0J5VY9pL%2F7zMi7zjW8NzDpakoxZDxBKF9R4sMS17sUPCSt2959DkY5zQwHi33G%2B6YWTsj4%2BIpyHsCAi9sG6ESJ%2F8pA%3D%3D | SCR_018893 | MoFlo Astrios Cell Sorter | 2026-09-12 12:59:07 | 13 | ||||||||
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DoubletFinder Resource Report Resource Website 1000+ mentions |
DoubletFinder (RRID:SCR_018771) | data analysis software, data processing software, software application, software resource | Software R package that predicts doublets in single cell RNA sequencing data. Doublet detection in single cell RNA sequencing data using artificial nearest neighbors. Identifies doublets using only gene expression data. | Doublet detection in single cell RNA, single cell RNA, doublet detection, RNA sequencing data, gene expression data, artificial nearest neighbors |
is related to: Seurat has parent organization: University of California at San Francisco; California; USA |
Damon Runyon Cancer Research Foundation ; Department of Defense Breast Cancer Research Program ; NICHD DP2 HD080351; NSF Science and Technology Center ; NSF MCB 1330864; UCSF Center for Cellular Construction |
PMID:30954475 | Free, Available for download, Freely available | SCR_018771 | 2026-09-12 12:59:05 | 1250 | ||||||||
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Plexon: 16 channel V-Probe Resource Report Resource Website 1+ mentions |
Plexon: 16 channel V-Probe (RRID:SCR_018784) | instrument resource | Linear electrode array used for intracranial electrophysiological recordings. V-Probe is multi-use, multi-site, linear electrode with recording sites positioned on side of sharpened, symmetric cone by Plexon Inc. Minimizes trauma to brain tissue upon insertion. Durable, highly customizable, and often used in acute research with medium to large animals. | Linear electrode, V-Probe, intracranial electrophysiological recording, Plexon Inc., minimizes trauma, brain tissue, insertion, customizable, animal research, instrument, equipment | is listed by: USEDit | Restricted | https://plexon.com/wp-content/uploads/2020/01/Probe-Technical-Guide.pdf | SCR_018784 | 2026-09-12 12:59:06 | 8 | |||||||||
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AsPredicted Resource Report Resource Website 100+ mentions |
AsPredicted (RRID:SCR_018789) | data or information resource, portal, topical portal | Website for study pre-registration. Defines minimum required criteria for pre-registration and allows authors to pre-register their study. It is standardized pre-registration that requires only what is necessary to separate exploratory from confirmatory analyses. | Study pre-registration, publish paper, evaluation, minimum required criteria, author study pre-registration, standardized pre-registration | has parent organization: University of Pennsylvania; Philadelphia; USA | Restricted | SCR_018789 | 2026-09-12 12:59:06 | 165 | ||||||||||
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Plexon: 16-channel digital headstage Resource Report Resource Website |
Plexon: 16-channel digital headstage (RRID:SCR_018783) | instrument resource | Headstage that attaches to 16-channel linear electrode arrays by Plexon Inc. Digitizes analog voltage signals and outputs them to data acquisition systems. | Headstage, digital headstage, 16 channel linear electrode arrays, Plexon Inc., voltage signal, instrument, equipment | is listed by: USEDit | Restricted | https://plexon.com/wp-content/uploads/2020/01/Digital-Headstage-Technical-Guide.pdf | SCR_018783 | Plexon 16-channel digital headstage (Generation 2) | 2026-09-12 12:59:06 | 0 | ||||||||
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AlgPred Resource Report Resource Website 50+ mentions |
AlgPred (RRID:SCR_018780) | data access protocol, service resource, software resource, web service | Web tool for prediction of allergens based on similarity of known epitope with any region of protein. Used for prediction of allergenic proteins and mapping of IgE epitopes. | Allergen prediction, allergenic protein, allergenic protein prediction, IgE epitopes mapping, epitope, protein region, prediction, bio.tools |
is listed by: Debian is listed by: bio.tools |
Council of Scientific and Industrial Research | PMID:16844994 | Free, Freely available | biotools:algpred | https://webs.iiitd.edu.in/raghava/algpred/submission.html, https://bio.tools/algpred | SCR_018780 | 2026-09-12 12:59:06 | 94 | ||||||
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FunGene Resource Report Resource Website 50+ mentions |
FunGene (RRID:SCR_018749) | analysis service resource, data or information resource, data repository, database, production service resource, service resource, software resource, software toolkit, storage service resource | Functional gene pipeline and repository. Functional gene repository provides collections of genes in interactive platform, while functional gene pipeline offers suite of tools for functional gene amplicon processing and analysis. Together they enable key steps in functional gene based microbial community analysis, from target selection and primer analysis to amplicon processing and ecological discovery. | Gene processing, microbial ecology, functional genes, amplification primers, phylogeny, biogeochemical cycles, amplicon analysis, ecological discovery, microbial community | has parent organization: Michigan State University; Michigan; USA | NIDDK UH3 DK083993; NIEHS ; NIEHS P42 ES004911; Office of Science U.S. Department of Energy ; USDA National Institute of Food and Agriculture |
PMID:24101916 | Free, Freely available | SCR_018749 | FunGene Pipeline | 2026-09-12 12:59:05 | 58 | |||||||
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syngo DynaCT Resource Report Resource Website |
syngo DynaCT (RRID:SCR_018902) | 3d visualization software, data processing software, data visualization software, software application, software resource | Software tool to construct 3D models of soft tissue using CT-like cross sectional imaging. | 3D model, soft tissue, soft tissue 3D model, 3D model construction, cross sectional imaging | Restricted | SCR_018902 | Siemens Healthineers syngo DynaCT | 2026-09-12 12:59:07 | 0 | ||||||||||
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RatsPub Resource Report Resource Website |
RatsPub (RRID:SCR_018905) | data access protocol, software application, software resource, text-mining software, web service | Web service that conducts comprehensive literature mining to identify roles of genes in addiction. Searches PubMed to find abstracts containing genes of interest and list of curated addiction related keywords. | Literature mining, addiction gene, PubMed abstract, gene, addiction, addiction relationship, neurogenetics | NIDA P30 DA044223; NIDA U01 DA047638 |
Free, Freely available | https://github.com/chen42/ratspub | SCR_018905 | rats.pub, Rats.pub, Relationship with Addiction Through Searches of PubMed | 2026-09-12 12:59:07 | 0 | ||||||||
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ABCD-ReproNim Course Resource Report Resource Website |
ABCD-ReproNim Course (RRID:SCR_018911) | data or information resource, knowledge environment resource, portal, training resource | Course provides training for reproducible analyses of Adolescent Brain Cognitive Development Study data. Designed to provide comprehensive background to ABCD study while delivering hands on instruction on reproducible ReproNim workflows and outcomes. | Adolescent Brain Cognitive Development Study data analysis, reproducible analysis, ABCD study data analysis, reprReproNim workflow instruction |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: ReproNim: A Center for Reproducible Neuroimaging Computation |
Free, Freely available | SCR_018911 | Adolescent Brain Cognitive Development ReproNim Course | 2026-09-12 12:59:07 | 0 | |||||||||
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NanoGalaxy Resource Report Resource Website 10+ mentions |
NanoGalaxy (RRID:SCR_018912) | data access protocol, data analysis software, data processing software, data visualization software, software application, software resource, software toolkit, web service | Webserver to process, analyse and visualize Oxford Nanopore Technologies (ONT) data and similar long-reads technologies. Collection of best practice and popular ONT-oriented tools are integrated in this custom Galaxy instance. | European Galaxy Project, Oxford Nanopore Technologies, Oxford Nanopore Technologies data, data analysis, long reads technology, ONT oriented tools collection, custom Galaxy instance, , Galaxy, Nanopore, bio.tools |
is listed by: bio.tools is listed by: Debian is related to: Galaxy is related to: University of Freiburg; Baden-Wurttemberg; Germany |
Free, Freely available | biotools:nanogalaxy | https://galaxyproject.org/use/nanogalaxy/, https://bio.tools/nanogalaxy | SCR_018912 | 2026-09-12 12:59:07 | 10 | ||||||||
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BadMedicine Resource Report Resource Website 1+ mentions |
BadMedicine (RRID:SCR_018879) | code testing framework, software application, software development tool, software library, software resource, software toolkit | Software library and command line tool for generating realistic looking synthetic Electronic Health Records data for testing purposes. | Electronic Health Record, electronic health record data generation, health data, testing health data, bio.tools |
is listed by: bio.tools is listed by: Debian |
Free, Freely available | biotools:badmedicine | https://bio.tools/badmedicine | SCR_018879 | 2026-09-12 12:59:06 | 1 | ||||||||
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robvis Resource Report Resource Website 100+ mentions |
robvis (RRID:SCR_018755) | robvis | software resource, software toolkit, web application | Software R package and web app, which facilitates rapid production of publication quality risk of bias assessment figures. Used to produce high quality figures that summarize the risk-of-bias assessments performed as part of systematic review or research synthesis project. | Risk of bias assessment, publication figure, publication quality figure, figure production, systematic review, research synthesis project | is related to: Shiny | University Hospitals Bristol NHS Foundation Trust ; University of Bristol |
DOI:10.1002/jrsm.1411 | Free, Freely available | SCR_018755 | Risk Of Bias VISualization | 2026-09-12 12:59:05 | 100 | ||||||
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Zeiss: Axio Imager 2 Resource Report Resource Website 10+ mentions |
Zeiss: Axio Imager 2 (RRID:SCR_018876) | instrument resource | Axio Imager 2 resolves samples from tissue sections in pathology to brain specimens in neuroscience to multi dyed FISH specimens. Works with ZEN imaging software. | Upright microscope, Zeiss, imaging microscope, instrument, equipment, upright microscope platform, |
is used by: Icahn School of Medicine at Mount Sinai Microscopy and Advanced Bioimaging Core Facility is related to: Zeiss: Axio Imager M2 is related to: Zeiss: Axio Imager Z2m system |
https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018876.pdf | SCR_018856 | https://www.zeiss.com/microscopy/us/products/light-microscopes/axio-imager-2-for-biology.html | SCR_018876 | Axio Imager 2 | 2026-09-12 12:59:06 | 41 | |||||||
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T2DSystems Resource Report Resource Website 1+ mentions |
T2DSystems (RRID:SCR_018913) | consortium, data or information resource, disease-related portal, organization portal, portal, project portal, topical portal | Project to bridge gap between in vitro human islet studies and clinical studies in human subjects. Used to integrate cellular and medical research data, collected by partners, with computational modelling to identify pathophysiological mechanisms and markers of spectrum of biological and cellular processes involved in pancreatic beta cell failure leading to impaired glucose tolerance and T2D. | Human islet study, cellular data, medical data, diabetes, pancreatic beta cell failure, impaired glucose tolerance, type 2 diabetes, glucose tolerance | is related to: TIGER Data Portal | Type 2 Diabetes | EU Horizon 2020 | Restricted | SCR_018913 | Type 2 Diabetes Systems, T2DSystems | 2026-09-12 12:59:07 | 1 | |||||||
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Diabetic Foot Consortium Resource Report Resource Website |
Diabetic Foot Consortium (RRID:SCR_018914) | DFC | consortium, data or information resource, disease-related portal, organization portal, portal, topical portal | Group of academic institutions committed to studying diabetic foot conditions, such as foot ulcers and wound healing, to develop predictive biomarkers which can be later used to create better treatment plans and improve health and quality of life for people living with diabetes. | Academic institution group, diabetic, diabetic foot, diabetic foot condition, foot ulcer, wound healing, biomarker |
is related to: Indiana University; Indiana; USA is related to: University of Pittsburgh; Pennsylvania; USA is related to: University of Miami; Florida; USA is related to: University of California at San Francisco; California; USA is related to: Stanford University; Stanford; California is related to: University of Michigan; Ann Arbor; USA |
diabetic | NIDDK | SCR_018914 | 2026-09-12 12:59:07 | 0 | ||||||||
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ScanITD Resource Report Resource Website 1+ mentions |
ScanITD (RRID:SCR_018886) | data analysis software, data processing software, sequence analysis software, software application, software resource | Open source software Python tool for detecting internal tandem duplication with variant allele frequency estimation. | Internal tandem duplication, FLT3, acute myeloid leukemia, TCGA, chimeric alignment, variant allele frequency, variant allele, frequency estimation, , bio.tools |
is listed by: Debian is listed by: bio.tools |
Acute Myeloid Leukemia | DOI:10.5524/100775 | Free, Available for download, Freely available | biotools:ScanItD | https://bio.tools/ScanITD, http://gigadb.org/dataset/100775 | SCR_018886 | Scan Internal Tandem Duplications | 2026-09-12 12:59:07 | 1 | |||||
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ROSIE Resource Report Resource Website 10+ mentions |
ROSIE (RRID:SCR_018764) | ROSIE | application programming interface, data access protocol, software resource, web application | Unified web framework for Rosetta applications. Web interface for selected Rosetta protocols. Web front end for Rosetta software suite. Provides common user interface for Rosetta protocols, stable application programming interface for developers to add additional protocols, flexible back-end to allow leveraging of computer cluster resources shared by Rosetta Commons member institutions, and centralized administration by Rosetta Commons to ensure continuous maintenance. Offers general and speedy paradigm for serverification of Rosetta applications. Lowers barriers to Rosetta use for broader biological community. | Web interface for Rosetta, Rosetta online server, Rosetta application serverification, Rosetta user interface | works with: Rosetta | Howard Hughes Medical and Institute International Student Research Fellowship ; NCI U54 CA143907; NCRR R00 RR024107; NEI PN2 EY016586; NIGMS R01 GM073151; NIGMS R01 GM07822; NIGMS R21 GM102716; NIGMS T32 GM 88118; NSF ; Taiwan Governmental Scholarship for Study Abroad |
PMID:23717507 | Restricted | https://rosie.rosettacommons.org/ | SCR_018764 | Rosetta Online Server that Includes Everyone | 2026-09-12 12:59:05 | 10 | |||||
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Chinese Glioma Genome Atlas Resource Report Resource Website 1000+ mentions |
Chinese Glioma Genome Atlas (RRID:SCR_018802) | CGGA | data or information resource, data set, database, disease-related portal, portal, topical portal | Web application for data storage and analysis to explore brain tumors datasets from Chinese cohorts. Data portal for storage and interactive exploration of multi-dimensional functional genomic data that includes primary and recurrent glioma samples from Chinese cohorts. Allows users to browse DNA mutation profile, mRNA/microRNA expression profile and methylation profile, and to do correlation and survival analysis in specific glioma subtype. | Functional genomic data, glioma samples, brain tumor datasets, Chinese cohort, whole exome sequencing data, DNA methylation data, mRNA sequencing data, microRNA microarray data, clinical data, DNA mutation profile analysis, expression profile, methylation profile, survival analysis, glioma subtype, FASEB list | Glioma | DOI:10.1101/2020.01.20.911982 | Free, Freely available | SCR_018802 | 2026-09-12 12:59:06 | 1344 |
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