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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Automated Home-Cage Functional Imaging project Resource Report Resource Website |
Automated Home-Cage Functional Imaging project (RRID:SCR_021567) | data or information resource, instrument resource, portal, project portal | Portal provides automated system for mesoscopic functional imaging that allows subjects to self initiate head fixation and imaging within home cage. Developed by University of British Columbia scientists. System for automated head fixation within mouse home cages. | Instrument, mesoscopic functional imaging, self initiate head fixation, imaging within home cage, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home-Cage Functional Imaging has parent organization: University of British Columbia; British Columbia; Canada |
DOI:10.1038/ncomms11611 | Free, Freely available | SCR_021567 | Automated Home-Cage Functional Imaging system | 2026-09-03 04:57:24 | 0 | ||||||||
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Touchscreen Cognition Resource Report Resource Website |
Touchscreen Cognition (RRID:SCR_021550) | data or information resource, instrument resource, portal, project portal | Project related to cognitive testing method for rodents.Provides touchscreen operant platform for testing learning and memory in rats and mice.Includes device chambers that can be used to measure rodent behavior.Not open source device. | Cognitive testing, rodent, touchscreen operant platform, learning testing, memory testing, rat, mice, device chamber, measure rodent behavior, OpenBehavior | is listed by: OpenBehavior | Free, Freely available | SCR_021550 | 2026-09-03 04:57:13 | 0 | ||||||||||
|
ACRoBaT Resource Report Resource Website |
ACRoBaT (RRID:SCR_021546) | data or information resource, instrument resource, portal, project portal | Project related to studying motor behavior. University of Washington in Seattle scientists have developed and published their device for training rats to perform modified center out task. | Instrument, automated device, training rats, perform modified center out task, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of Washington; Seattle; USA |
DOI:10.1016/j.bbr.2017.11.031 | Free, Freely available | SCR_021546 | Automated Center out Rodent Behavioral Trainer | 2026-09-03 04:57:20 | 0 | ||||||||
|
Visual stimulator with customizable light spectra Resource Report Resource Website 1+ mentions |
Visual stimulator with customizable light spectra (RRID:SCR_021545) | data or information resource, instrument resource, portal, project portal | Project related to visual neuroscience.Provides spatial visual stimulator with arbitrary spectrum of light for visual neuroscientists.Open source, low cost visual stimulator which can be customized with up to 6 chromatic channels. Spectrum of light can be arbitrary and customizable to be adapted to different animal models based on their visual spectrum. Device details, including parts list and information for custom python library for generating visual stimuli (QDSpy), can be found in eLife publication. | Instrument, Visual stimulator, spatial visual stimulator, spectrum of light, visual neuroscience, OpenBehavior | is listed by: OpenBehavior | DOI:10.7554/elife.48779 | Commercially available | SCR_021545 | 2026-09-03 04:57:14 | 1 | |||||||||
|
LinCoM Resource Report Resource Website |
LinCoM (RRID:SCR_021519) | data analysis software, data processing software, software application, software resource, software toolkit | Software MATLAB package for linearization of place fields in complex mazes.Graph theoretic approach for production of linear place fields in complex mazes. Used for producing linear place fields for hippocampal cells during behavior in complex mazes.Specifically designed to deal with mazes with one or more decision points (e.g., T-maze, W-maze, double T-maze, radial maze, plus maze, etc). | Place fields linearization, complex mazes, producing linear place fields, hippocampal cells, complex mazes behavior, OpenBehavior |
is listed by: OpenBehavior is related to: LinCoM project |
DOI:10.1101/2020.08.17.253849 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/lincom/ | SCR_021519 | Linear place fields in Complex Mazes | 2026-09-03 04:57:28 | 0 | |||||||
|
Pypreclin Resource Report Resource Website 1+ mentions |
Pypreclin (RRID:SCR_021526) | data processing software, image processing software, software application, software resource | Software Python tool to processes raw macaque fMRI images using algorithms embedded in automatic pipeline. | Raw macaque fMRI images, fMRI images, macaque images, Python, OpenBehavior |
is listed by: OpenBehavior is related to: Pypreclin project |
DOI:10.1016/j.neuroimage.2019.116353 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/pypreclin/ | SCR_021526 | 2026-09-03 04:57:22 | 8 | ||||||||
|
Oculomatic Resource Report Resource Website |
Oculomatic (RRID:SCR_021525) | data acquisition software, data processing software, software application, software resource | Software tool for high speed eye tracking for Point Gray USB3.0 cameras.Oculomatic software tracks eye position within acquired image frame at frame rate dictated by image sensor. | High speed eye tracking, Point Gray USB3.0 camera, Oculomatic Eye Tracking system, track eye movements, OpenBehavior |
is listed by: OpenBehavior is related to: Oculomatic Eye Tracking project |
DOI:10.1016/j.jneumeth.2016.06.016 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/oculomatic-eye-tracking/ | SCR_021525 | Oculomatic eye tracking | 2026-09-03 04:57:13 | 0 | |||||||
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Pathfinder Resource Report Resource Website 100+ mentions |
Pathfinder (RRID:SCR_021520) | data analysis software, data processing software, software application, software resource | Open source software for analyzing spatial navigation search strategies. | Analyzing spatial navigation search strategies, spatial navigation, search strategies, OpenBehavior |
is listed by: OpenBehavior is related to: Pathfinder project |
DOI:10.1101/715961 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/pathfinder/ | SCR_021520 | 2026-09-03 04:57:18 | 295 | ||||||||
|
Wave Surfer Resource Report Resource Website 50+ mentions |
Wave Surfer (RRID:SCR_021529) | data acquisition software, data analysis software, data processing software, software application, software resource | Open source software application for neurophysiology data acquisition and analysis. Program is based in MatLab, and evolved from earlier open source software package called Ephus. | neurophysiology data acquisition, neurophysiology data analysis, neurophysiology data, MATLAB, OpenBehavior |
is listed by: OpenBehavior is related to: Wave Surfer project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/wave-surfer/ | SCR_021529 | 2026-09-03 04:57:12 | 53 | |||||||||
|
Spike Forest project Resource Report Resource Website |
Spike Forest project (RRID:SCR_021472) | data or information resource, portal, project portal | Project related to neural data analysis. Provides open-source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website. | Validating automated neural spike sorters, electrophysiological recordings, spike sorting codes, spike sorting analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Spike Forest |
DOI:10.7554/elife.55167 | Free, Freely available | SCR_021472 | Spike Forest | 2026-09-03 05:00:15 | 0 | ||||||||
|
Pypreclin project Resource Report Resource Website |
Pypreclin project (RRID:SCR_021473) | data or information resource, portal, project portal | Project related to preprocessing of images. Provieds software Python tool to processes raw macaque fMRI images using algorithms embedded in automatic pipeline. | Raw macaque fMRI images, fMRI images, macaque images, Python, OpenBehavior |
is listed by: OpenBehavior is related to: Pypreclin |
DOI:10.1016/j.neuroimage.2019.116353 | Free, Freely available | SCR_021473 | Pypreclin | 2026-09-03 05:00:29 | 0 | ||||||||
|
MNE Scan project Resource Report Resource Website |
MNE Scan project (RRID:SCR_021470) | data or information resource, portal, project portal | Project related to real time acquisition and processing of electrophysiological data.Provides software tool for acquisition and processing of electrophysiological data. | Electrophysiological data processing, medical regulatory requirements, build standalone applications, MEG data acquisition, MEG data processing, EEG data acquisition, MEG data acquisition, OpenBehavior |
is listed by: OpenBehavior is related to: MNE Scan |
DOI:10.1016/j.jneumeth.2018.03.020 | Free, Freely available | SCR_021470 | MNE Scan | 2026-09-03 05:00:28 | 0 | ||||||||
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3DTracker project Resource Report Resource Website |
3DTracker project (RRID:SCR_021440) | data or information resource, portal, project portal | Project related to markerless computerized behavioral analysis for laboratory animals.Provides open source 3D video based behavioral analysis system for neuroscience. System includes open source software tool for 3D-video based markerless computerized behavioral analysis. | 3D video, computerized behavioral analysis, laboratory animals, reconstruct 3D image, animal image, 3D image, estimate animal 3D pose, behavior measurement, freely moving, head fixed, OpenBehavior |
is listed by: OpenBehavior is related to: 3DTracker |
Free, Freely available | SCR_021440 | 3DTracker | 2026-09-03 05:00:06 | 0 | |||||||||
|
LinCoM project Resource Report Resource Website |
LinCoM project (RRID:SCR_021438) | data or information resource, portal, project portal | Project related to animal behavior in complex mazes.Provides software MATLAB package for linearization of place fields in complex mazes. | Place fields linearization, complex mazes, producing linear place fields, hippocampal cells, complex mazes behavior, OpenBehavior |
is listed by: OpenBehavior is related to: LinCoM |
DOI:10.1101/2020.08.17.253849 | Free, Freely available | SCR_021438 | LinCoM | 2026-09-03 05:00:28 | 0 | ||||||||
|
EthoWatcher project Resource Report Resource Website |
EthoWatcher project (RRID:SCR_021435) | data or information resource, portal, project portal | Project related to video tracking, detailed ethography, and extraction of kinematic variables from digital video files of laboratory animals.Provides computational tool developed at Federal University of Santa Catarina. | Video tracking, kinematic variables extraction. digital video files, laboratory animals, OpenBehavior |
is listed by: OpenBehavior is related to: EthoWatcher has parent organization: Federal University of Santa Catarina; Santa Catarina; Brazil |
DOI:10.1016/j.compbiomed.2011.12.002 | Free, Freely available | SCR_021435 | EthoWatcher | 2026-09-03 05:00:14 | 0 | ||||||||
|
Automated Rodent Tracker project Resource Report Resource Website |
Automated Rodent Tracker project (RRID:SCR_021432) | ART | data or information resource, portal, project portal | Project related to development of automated rodent tracking position and movement. Provides software tool to automatically track rodent.Used to track head movements, body movements and also aspects of body size.Identifies certain behaviours from video footage, such as rotations, moving forwards, interacting with objects and staying still. | Track rodent position, track movement, track head movements, track body movements, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Rodent Tracker |
DOI:10.1016/j.jneumeth.2017.04.006 | Free, Freely available | SCR_021432 | Automated Rodent Tracker | 2026-09-03 05:00:05 | 0 | |||||||
|
DeepSqueak project Resource Report Resource Website |
DeepSqueak project (RRID:SCR_021450) | data or information resource, portal, project portal | Project related to rodent social communication through repertoire of ultrasonic vocalizations. Provides deep learning based system for quantification of Ultrasonic Vocalizations.Includes software MATLAB package for high throughput USV detection, classification, and analysis. | data quantification, ultrasonic vocalizations quantification, ultrasonic vocalization, OpenBehavior |
is listed by: OpenBehavior is related to: DeepSqueak |
DOI:10.1038/s41386-018-0303-6 | Free, Freely available | SCR_021450 | DeepSqueak | 2026-09-03 05:00:29 | 0 | ||||||||
|
Rigbox project Resource Report Resource Website |
Rigbox project (RRID:SCR_021444) | data or information resource, portal, project portal | Project related to streamlining behavioral neuroscience experiments.Provides open source software MATLAB toolbox for running behavioral neuroscience experiments and managing data.Used for probing neurons and behavior. | Managing behavioral neuroscience experiments, running behavioral neuroscience experiments, managing data, acquiring experiment related data, OpenBehavior |
is listed by: OpenBehavior is related to: Rigbox |
DOI:10.1523/eneuro.0406-19.2020 | Free, Freely available | SCR_021444 | Rigbox | 2026-09-03 05:00:39 | 0 | ||||||||
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Online Animal Tracker project Resource Report Resource Website |
Online Animal Tracker project (RRID:SCR_021386) | OAT | data or information resource, portal, project portal | Project related to processing video, extracting object position information, and streaming data.Provides set of programs for processing video for behavioral research. Includes OAT software tool as real time position tracker which was developed by Massachusetts Institute of Technology scientists. | Real time animal position tracking, experimental neuroscience, real time object tracking, processing images, extracting object position information, streaming data to disk, OpenBehavior |
is listed by: OpenBehavior is related to: Online Animal Tracker has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
Free, Freely available | SCR_021386 | Online Animal Tracker | 2026-09-03 05:00:05 | 0 | ||||||||
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Behavioral Segmentation of Open-field in DeepLabCut project Resource Report Resource Website |
Behavioral Segmentation of Open-field in DeepLabCut project (RRID:SCR_021410) | B-SOiD | data or information resource, portal, project portal | Project related to unsupervised behavior analysis.Carnegie Mellon University has shared B-SOiD, open source unsupervised algorithm for discovery of spontaneous behaviors. Includes software pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users. | OpenBehavior, pairs unsupervised pattern recognition, supervised classification, behavior predictions, discovers actions, classifies actions |
is listed by: OpenBehavior is related to: Behavioral Segmentation of Open-field in DeepLabCut has parent organization: Carnegie Mellon University; Pennsylvania; USA |
DOI:10.1101/770271 | Free, Freely available | SCR_021410 | B-SOiD v2.0, Behavioral Segmentation of Open-field in DeepLabCut | 2026-09-03 05:00:27 | 0 |
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