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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Animal Models Core Resource Report Resource Website |
Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Animal Models Core (RRID:SCR_015396) | access service resource, core facility, resource, service resource | Core that assists in mouse line generation by both oocyte micro-injection and by embryonic stem cell gene targeting technologies. It also establishes breeding colonies of cystic fibrosis mice, and genotypes and provides these to UAB investigators and furnishes electrophysiology tests of CFTR activation, including murine nasal potential difference assays and intestinal short circuit current measurements. | animal models, mouse model, mice colonies, cystic fibrosis research, cystic fibrosis model |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Alabama at Birmingham School of Medicine; Alabama; USA has parent organization: Gregory Fleming James Cystic Fibrosis Research Center is organization facet of: Gregory Fleming James Cystic Fibrosis Research Center |
Cystic Fibrosis | NIDDK P30DK072482; Cystic Fibrosis Foundation |
Available to the research community | SCR_015396 | 2026-09-05 06:34:06 | 0 | ||||||||
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MMPC-University of California Davis Energy Balance Exercise and Behavior Core Resource Report Resource Website 1+ mentions |
MMPC-University of California Davis Energy Balance Exercise and Behavior Core (RRID:SCR_015364) | access service resource, core facility, resource, service resource | Core that provides investigators with services to accurately measure the major components of energy balance in their mouse models and tests that allow investigators to examine physiological factors that may influence food intake or energy expenditure. | energy balance, exercise and behavior, obesity |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of California at Davis; California; USA has parent organization: National Mouse Metabolic Phenotyping Centers has parent organization: MMPC-University of California Davis is organization facet of: MMPC-University of California Davis |
Obesity, Diabetes, metabolic disease | NIDDK DK092993 | Available to the research community | SCR_015364 | 2026-09-05 06:34:06 | 6 | ||||||||
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MMPC-University of Massachusetts Medical School Metabolism Core Resource Report Resource Website |
MMPC-University of Massachusetts Medical School Metabolism Core (RRID:SCR_015369) | access service resource, core facility, resource, service resource | Core that conducts specialized and non-invasive metabolic experiments to measure insulin sensitivity, glucose/lipid/protein metabolism, pancreatic beta-cell function, body composition and energy balance. Its services include access to hyperglycemic clamps to assess insulin secretion and pancreatic beta cell function in awake mice and exercise studiesl with acute, chronic endurance, and exhaustive exercise protocols and using in-house cage wheels. | metabolism core, body composition, energy balance, exercise studies |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Massachusetts Medical School; Massachusetts; USA has parent organization: National Mouse Metabolic Phenotyping Centers has parent organization: University of Massachusetts Medical School Metabolic Disease Research Center Core Facility is organization facet of: University of Massachusetts Medical School Metabolic Disease Research Center Core Facility |
NIDDK UC2-DK093000 | Available to the research community | SCR_015369 | 2026-09-05 06:34:06 | 0 | |||||||||
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MMPC-University of California Davis Microbiome and Host Response Core Resource Report Resource Website 1+ mentions |
MMPC-University of California Davis Microbiome and Host Response Core (RRID:SCR_015361) | access service resource, core facility, resource, service resource | Core that offers measurement of gut permeability, plasma lipopolysaccharide binding protein (LBP) assay, and inflammatory profiling. | gut, microbiome, host response, digestion |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of California at Davis; California; USA has parent organization: National Mouse Metabolic Phenotyping Centers has parent organization: MMPC-University of California Davis is organization facet of: MMPC-University of California Davis |
NIDDK DK092993 | Available to the research community | SCR_015361 | 2026-09-05 06:34:06 | 9 | |||||||||
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University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Immunology Core Resource Report Resource Website |
University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Immunology Core (RRID:SCR_015409) | access service resource, core facility, resource, service resource | Core facility which provides a variety of assay services to evaluate cell-mediated and humoral responses to in animal models of gene therapies. | cell assay, assay service, gene therapy, animal model |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA has parent organization: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis is organization facet of: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis |
Cystic Fibrosis | NIDDK P30DK047757 | Available to the research community | SCR_015409 | 2026-09-05 06:34:06 | 0 | ||||||||
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MMPC-University of Michigan Medical School Microvascular Complications Core Resource Report Resource Website |
MMPC-University of Michigan Medical School Microvascular Complications Core (RRID:SCR_015376) | access service resource, core facility, resource, service resource | Core which provides a complete range of microvascular phenotyping of murine models of diabetes, obesity and metabolic disease, including validated, reproducible and standardized phenotyping of the three major microvascular complications: diabetic polyneuropathy, nephropathy and retinopathy. | microvascular complications, dpn, dr, dn |
is listed by: NIDDK Information Network (dkNET) has parent organization: National Mouse Metabolic Phenotyping Centers has parent organization: University of Michigan; Ann Arbor; USA has parent organization: MMPC-University of Michigan Medical School is organization facet of: MMPC-University of Michigan Medical School |
NIDDK U2C-DK110768 | Available to the research community | SCR_015376 | 2026-09-05 06:34:06 | 0 | |||||||||
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MMPC-Vanderbilt University School of Medicine Metabolic Regulation Core Resource Report Resource Website |
MMPC-Vanderbilt University School of Medicine Metabolic Regulation Core (RRID:SCR_015377) | access service resource, core facility, resource, service resource | Core whose services include determining the components of energy balance with high precision and time resolution, providing robust imaging technology to monitor the dynamics of cellular process, and providing innovative mouse bariatric surgery models with application to basic and translational research. | pathophysiology, in vivo, metabolic core, metabolic imaging |
is listed by: NIDDK Information Network (dkNET) has parent organization: National Mouse Metabolic Phenotyping Centers has parent organization: MMPC-Vanderbilt University School of Medicine is organization facet of: MMPC-Vanderbilt University School of Medicine |
NIDDK U24 DK059637 | Available to the research community | SCR_015377 | 2026-09-05 06:34:06 | 0 | |||||||||
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MMPC-University of Massachusetts Medical School Humanized Mouse Cell Transplantation and Assessment Core Resource Report Resource Website |
MMPC-University of Massachusetts Medical School Humanized Mouse Cell Transplantation and Assessment Core (RRID:SCR_015372) | access service resource, core facility, resource, service resource | Core which provides humanized mice that enable clinically relevant in vivo studies of human cells, tissues, and immune system without putting patients at risk and expert in vivo functional analysis of transplanted human islets and stem cell-derived b-cells in immunodeficient mice that are highly valuable to the mouse research community. | mouse cell transportation, humanized mouse, cell assessment |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Massachusetts Medical School; Massachusetts; USA has parent organization: National Mouse Metabolic Phenotyping Centers has parent organization: University of Massachusetts Medical School Metabolic Disease Research Center Core Facility is organization facet of: University of Massachusetts Medical School Metabolic Disease Research Center Core Facility |
NIDDK UC2-DK093000 | Available to the research community | SCR_015372 | 2026-09-05 06:34:06 | 0 | |||||||||
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MMPC-University of Massachusetts Medical School Islet Core Resource Report Resource Website |
MMPC-University of Massachusetts Medical School Islet Core (RRID:SCR_015370) | access service resource, core facility, resource, service resource | Core which provides comprehensive in vivo, ex vivo, and in vitro analysis of pancreatic function and islet structure. Its services include mouse pancreas preparation for histological experiments, surgical isolation of mouse islets, and islet structural analysis. | islet, insulin, pancreatic function, islet structure |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Massachusetts Medical School; Massachusetts; USA has parent organization: National Mouse Metabolic Phenotyping Centers has parent organization: University of Massachusetts Medical School Metabolic Disease Research Center Core Facility is organization facet of: University of Massachusetts Medical School Metabolic Disease Research Center Core Facility |
NIDDK UC2-DK093000 | Available to the research community | SCR_015370 | 2026-09-05 06:34:06 | 0 | |||||||||
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University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Animal Metabolism Phenotyping Core Resource Report Resource Website 1+ mentions |
University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Animal Metabolism Phenotyping Core (RRID:SCR_015465) | access service resource, core facility, resource, service resource | Core that offers technical support and expertise for measuring traits related to metabolism in mouse models of obesity and nutritionally relevant disease. It provides access to methods, equipment, and populations to support high quality and high throughput phenotyping of energy balance components in mice. | animal metabolism, animal metabolism phenotyping, mri, metabolic cages, calorimetry |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA has parent organization: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center is organization facet of: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center |
Obesity | NIDDK DK056350 | Available to the research community | SCR_015465 | 2026-09-05 06:34:07 | 1 | ||||||||
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University of Alabama at Birmingham Nutrition and Obesity Research Center Animal Models Core Resource Report Resource Website |
University of Alabama at Birmingham Nutrition and Obesity Research Center Animal Models Core (RRID:SCR_015466) | access service resource, core facility, resource, service resource | Core that provides specialized expertise in the use of animal models and instrumentation to facilitate animal research related to nutrition and obesity. | obesity animal model, nutrition animal model, animal model service |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Alabama at Birmingham; Alabama; USA has parent organization: University of Alabama at Birmingham Nutrition and Obesity Research Center is organization facet of: University of Alabama at Birmingham Nutrition and Obesity Research Center |
Obesity | NIDDK P30DK056336 | Available to the research community, Fee for service | SCR_015466 | 2026-09-05 06:34:07 | 0 | ||||||||
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UCSF Liver Center Immunology Core Resource Report Resource Website |
UCSF Liver Center Immunology Core (RRID:SCR_015596) | access service resource, core facility, service resource | Core that takes advantage of local expertise and resources to enable Center members to analyze cell populations in mouse or human livers. It performs complex analyses on small numbers of human cells, such as those obtained from liver biopsies. | immunology, single cell analysis, flow cytometry, QPCR |
is listed by: NIDDK Information Network (dkNET) has parent organization: UCSF Liver Center is organization facet of: UCSF Liver Center |
liver disease | NIDDK P30 DK026743 | Available to the research community | SCR_015596 | 2026-09-05 06:34:08 | 0 | ||||||||
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University of Chicago Digestive Diseases Research Core Center Host-Microbe Core Resource Report Resource Website 1+ mentions |
University of Chicago Digestive Diseases Research Core Center Host-Microbe Core (RRID:SCR_015603) | access service resource, core facility, service resource | Core that consists of two components: The Enteric Microbiology and The Gnotobiotic Mouse components. The Enteric Microbiology component offers novel screening and advanced technologies for compositional and functional profiling of the resident microbial communities in the gastrointestinal tract. The Gnotobiotic Mouse component enables investigators to study the effects and causal role of specific microorganisms or profiles in vivo. | host microbe, Enteric Microbiology, Gnotobiotic Mouse, inflammatory bowel diseases |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Chicago Digestive Diseases Research Core Center is organization facet of: University of Chicago Digestive Diseases Research Core Center |
digestive disease | NIDDK P30 DK042086 | Available to affiliated researchers, Available to DDRCC researchers | SCR_015603 | 2026-09-05 06:34:08 | 1 | ||||||||
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New York Obesity Nutrition Research Center Molecular Biology and Molecular Genetics Core Resource Report Resource Website |
New York Obesity Nutrition Research Center Molecular Biology and Molecular Genetics Core (RRID:SCR_015436) | access service resource, core facility, resource, service resource | Core whose goal is to assist investigators in applying the tools and technologies of molecular genetics and genomics to elucidate the molecular-genetic bases of obesity and its comorbidities. Its services include consultation on study design, analysis, and applicable molecular biological techniques and developing and making research tools and reagents. | molecular biology, molecular genetics, obesity research |
has parent organization: Columbia University; New York; USA has parent organization: New York Obesity Nutrition Research Center is organization facet of: New York Obesity Nutrition Research Center |
Obesity | NIDDK P30DK026687 | Available to the research community, Acknowledgement requested | SCR_015436 | 2026-09-05 06:34:07 | 0 | ||||||||
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Gene Weaver Resource Report Resource Website 10+ mentions |
Gene Weaver (RRID:SCR_003009) | analysis service resource, data analysis service, data or information resource, data repository, database, production service resource, service resource, storage service resource | Freely accessible phenotype-centered database with integrated analysis and visualization tools. It combines diverse data sets from multiple species and experiment types, and allows data sharing across collaborative groups or to public users. It was conceived of as a tool for the integration of biological functions based on the molecular processes that subserved them. From these data, an empirically derived ontology may one day be inferred. Users have found the system valuable for a wide range of applications in the arena of functional genomic data integration. | phenotype, microarray, gene, genome, functional genomics, process, pathway, function, gene set, genomic data integration, analysis, visualization |
is used by: NIF Data Federation is used by: Integrated Datasets is listed by: OMICtools is related to: Integrated Manually Extracted Annotation has parent organization: Jackson Laboratory |
Integrative Neuroscience Initiative on Alcoholism ; NIAAA R01 AA18776; NIAAA U01 AA13499; NIAAA U24 AA13513 |
PMID:22080549 PMID:19733230 |
Free, Freely available | r3d100012464, OMICS_02232, nif-0000-00517 | http://ontologicaldiscovery.org/, https://doi.org/10.17616/R3248T | SCR_003009 | GeneWeaver, GeneWeaver - A system for the integration of functional genomics experiments, Ontological Discovery Environment, GeneWeaver.org | 2026-09-05 06:29:56 | 39 | |||||
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neuromice Resource Report Resource Website |
neuromice (RRID:SCR_002993) | neuromice | biomaterial supply resource, material resource, organism supplier | THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 08, 2013. A consortium of three facilities whose purpose is to establish, characterize, and distribute novel mutant mouse models with neural and/or behavioral phenotypes, and distribute them to the worldwide research community. Interested scientists are able to obtain information about mouse lines at all three sites in a single unified database. GOALS * Increase genomic and genetic tools for functional gene identification * Provide mice with mutations that alter the nervous system or behavior * Build collaborations between geneticists and neuroscientists The consortium is made up of three mutagenesis and phenotypic screening facilities, focused on identifying alterations in nervous system function and behavior, and established by NIH. They are the Neurogenomics Project at Northwestern University, the Neuroscience Mutagenesis Facility at The Jackson Laboratory, and the Neuromutagenesis Project of the Tennessee Mouse Genome Consortium. The NIH Neurogenomics Project at Northwestern University is directed by Dr. Joseph S. Takahashi, who also acts as the Director of the Neuromice.org consortium. Chemical mutagenesis is used to induce mutations throughout the genome and combined with phenotypic screens to detect mice with mutations. In order to maximize the genomic coverage and recover both dominant and recessive mutations, a dominant G1 screen and a recessive G3 screen are utilized. Phenotypic screens focus on five primary domains: learning and memory, behavioral responses to stress, responses to psychostimulants, circadian rhythmicity, and vision. The Neuroscience Mutagenesis Facility at the Jackson Laboratory is directed by Dr. Wayne N. Frankel. The Neuroscience Mutagenesis Facility is using a three-generation backcross breeding scheme to produce homozygous mutants and will thus recover dominant, semidominant, and recessive mutations. In addition, some mutagenesis will be done in ES cells followed by two generations of breeding. Phenotypic screens focus on identifying mutations affecting: motor function, seizure threshold, hearing, vision, and neurodevelopment. The Neuromutagenesis Project of the Tennessee Mouse Genome Consortium (TMGC) involves researchers throughout the state of Tennessee, under the direction of Dr. Daniel Goldowitz, Ph.D., at the University of Tennessee Health Science Center, Memphis. TMGC also includes researchers at Oak Ridge National Laboratory, Vanderbilt University, Meharry Medical College, University of Tennessee-Knoxville, St. Jude Children's Research Hospital, and the University of Memphis. The Project is using regional mutagenesis, covering regions on chromosomes 10, 14, 15, 19, and X, thus including approximately 15 of the genome in the screened region. Phenotypic screens include: motor and sensory function, learning and memory, neurohistology, aging, alcohol response, abused drug response, visual function, and social behavior. Neuromice.org has stopped taking orders online but mutants are orderable please contact the originating center for availability and pricing details. Live targeted mutant Fragile X model mice are now available for distribution. | eye, fragile x syndrome, gene expression phenotype, geneticist, anxiety, ataxia, behavior, b-wave, cocaine, mus, musculoskeletal movement, mutant mouse strain, mutated variant site, mutation, nervous system, nervous system behavior, nervous system function, neuromuscular function, neuroscientist, phenotype, scotopic threshold response, substance-related disorder, tremor, visual perception, mutant, mouse model, neural phenotype, behavioral phenotype, neuron, mutagenesis, learning, memory, stress, psychostimulant, circadian rhythm, vision, motor function, seizure threshold, hearing, neurodevelopment, chromosome, motor function, sensory function, neurohistology, alcohol abuse, drug abuse, visual function, social behavior |
is listed by: One Mind Biospecimen Bank Listing is related to: JAX Neuroscience Mutagenesis Facility has parent organization: Northwestern University; Illinois; USA has parent organization: JAX Neuroscience Mutagenesis Facility |
Aging | NIH Blueprint for Neuroscience Research | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00046 | http://www.neuromice.org | SCR_002993 | neuromice.org | 2026-09-05 06:29:56 | 0 | ||||
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RAVEN Resource Report Resource Website 100+ mentions |
RAVEN (RRID:SCR_001937) | RAVEN | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | Tool to search for putative regulatory genetic variation in your favorite gene. Single nucleotide polymorphisms (SNPs) (from dbSNP and user defined) are analyzed for overlap with potential transcription factor binding sites (TFBS) and phylogenetic footprinting using UCSC phastCons scores from multiple alignments of 8 vertebrate genomes., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | transcription factor binding site, phylogenetic footprint, regulatory sequence variation, genetic variation, in silico, regulatory sequence, FASEB list |
uses: Embassy-domsearch is listed by: OMICtools has parent organization: University of British Columbia; British Columbia; Canada |
PMID:18208319 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01932 | SCR_001937 | Regulatory analysis of Variation in Enhancers, RAVEN - Regulatory analysis of Variation in ENhancers | 2026-09-05 06:29:54 | 127 | ||||||
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hmChIP Resource Report Resource Website 1+ mentions |
hmChIP (RRID:SCR_005407) | hmChIP | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | A database of genome-wide chromatin immunoprecipitation (ChIP) data in human and mouse. Currently, the database contains >2000 samples from >500 ChIP-seq and ChIP-chip experiments, representing a total of >170 proteins and >10,000,000 protein-DNA interactions (March 2014). A web server provides an interface for database query. Protein-DNA binding intensities can be retrieved from individual samples for user-provided genomic regions. The retrieved intensities can be used to cluster samples and genomic regions to facilitate exploration of combinatorial patterns, cell type dependencies, and cross-sample variability of protein-DNA interactions. | chromatin immunoprecipitation, chip-seq, chip-chip, protein, protein-dna interaction, binding intensity |
is listed by: OMICtools has parent organization: Johns Hopkins Bloomberg School of Public Health; Maryland; USA |
PMID:21450710 | The community can contribute to this resource | OMICS_00536 | SCR_005407 | 2026-09-05 06:29:58 | 5 | |||||||
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ChEA Resource Report Resource Website 100+ mentions |
ChEA (RRID:SCR_005403) | ChEA | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource, software application, software resource | Data analysis service for gene-list enrichment analysis against a manual database. It allows users to input lists of mammalian gene symbols for which the program computes over-representation of transcription factor targets from the ChIP-X database. The database integrates interaction data from ChIP-chip, ChIP-seq, ChIP-PET and DamID studies and contains 189,933 interactions, manually extracted from 87 publications, describing the binding of 92 transcription factors to 31,932 target genes. | chip, transcription factor, interaction, mrna expression, gene, target gene, command-line, chip-chip, chip-seq |
is listed by: OMICtools has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
PMID:20709693 | OMICS_00526 | SCR_005403 | ChIP Enrichment Analysis | 2026-09-05 06:29:58 | 280 | |||||||
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SOURCE Resource Report Resource Website 50+ mentions |
SOURCE (RRID:SCR_005799) | SOURCE | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | SOURCE compiles information from several publicly accessible databases, including UniGene, dbEST, UniProt Knowledgebase, GeneMap99, RHdb, GeneCards and LocusLink. GO terms associated with LocusLink entries appear in SOURCE. The mission of SOURCE is to provide a unique scientific resource that pools publicly available data commonly sought after for any clone, GenBank accession number, or gene. SOURCE is specifically designed to facilitate the analysis of large sets of data that biologists can now produce using genome-scale experimental approaches Platform: Online tool | genomic, functional annotation, ontology, gene expression, gene, genome, statistical analysis, bio.tools, FASEB list |
is listed by: Gene Ontology Tools is listed by: Debian is listed by: bio.tools is related to: Gene Ontology has parent organization: SMD |
NIGMS ; NCI CA85129-04; NIGMS GM07365 |
PMID:12519986 | Restricted | biotools:source, nlx_149287 | https://login.stanford.edu/idp/profile/SAML2/Redirect/SSO?execution=e1s1, https://bio.tools/source | SCR_005799 | 2026-09-05 06:29:59 | 69 |
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