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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Cancer Center Tissue Bank - Fudan University Resource Report Resource Website |
Cancer Center Tissue Bank - Fudan University (RRID:SCR_004596) | ITB | biomaterial supply resource, material resource, tissue bank | The Institutional Tissue Bank (ITB) of Fudan University Shanghai Cancer Center was established in 2006 with the goal of serving as a central repository for human tissue samples for cancer research and possible personalized medicine for the institution. The Institutional Research Board oversees the fulfilling of informed consent of each patient whose samples are collected. The ITB''s collection procedures meet the global quality standards and provide high quality tissue samples. The quality control for morphology, RNA, DNA and protein has been set up to ensure the sample quality. Routine frozen section from tissue aliquot is made for every piece of sample to ensure the component of tumor tissue and the pathological feature is the same as the diagnosed tumor. Agilent 2100 Bioanalyzer was used to provide RNA and DNA quality parameters. The Tissue Bank occupies 500 m2, with sufficient space for sample preparation and storage, data registration, data tracking/access, related equipments and monitor system. Variant samples including blood, tumor tissue, and body fluids are collected and serve as alternative permanent patient tissue records. Annotation of collected samples is captured through linking the medical record and pathological report system to tissue bank software. Frequent tumor types such as lung cancer, breast cancer, gastric cancer, urological tumors, gynecological tumors and esophageal cancers, head & neck cancers, as well as infrequent cancer types such as malignant soft tissue sarcomas, pancreatic cancer, gall bladder cancer, and other rare cancers are all collected and stored. Tumor tissues are stored with matched normal tissues. Serum and plasma are isolated from coagulation plus and coagulation minus blood samples. White blood cells are stored as well. Tissues are stored both in RNALater at -20 degrees C and -80 degrees C after snap frozen. Samples have been increased from 4,000 in 2008 to 10,783 in 2009. To the end of September 2010, over 30,000 samples has been processed and stored in our tissue bank. As planned, 50,000 samples will be stored dynamically. Over 50 funded projects have used the samples from our tissue bank. Productive papers have been published in the past years by using the samples. More and more projects will be approved to get research resources from tissue bank in the future. The tissue bank of FUSCC has been designated as the key subject and successful model by Shanghai municipal government. | blood, tumor tissue, body fluids, cancer, normal tissue, serum, plasma, white blood cells, snap frozen, lung cancer, breast cancer, gastric cancer, urological tumor, gynecological tumor, esophageal cancer, head cancer, neck cancer, malignant soft tissue sarcomas, pancreatic cancer, gall bladder cancer, rare cancer, matched normal tissue |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Fudan University; Shanghai; China |
Cancer, Lung cancer, Breast cancer, Gastric cancer, Urological tumor, Gynecological tumor, Esophageal cancer, Head cancer, Neck cancer, Malignant soft tissue sarcomas, Pancreatic cancer, Gall bladder cancer, Rare cancer, Matched normal tissue | nlx_59788 | http://www.shca.org.cn/eng/content.asp?ArticleID=63 | SCR_004596 | SciCrunch Registry | Tissue bank of FUSCC, Institutional Tissue Bank of Fudan University Shanghai Cancer Center, ITB of FUSCC | 2026-10-17 01:32:46 | 0 | ||||||
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Fox Chase Biosample Repository Core Facility Resource Report Resource Website |
Fox Chase Biosample Repository Core Facility (RRID:SCR_004746) | FCCC BRCF | biomaterial supply resource, material resource, tissue bank | Fox Chase has developed a facility dedicated to the collection and distribution of human subject biosamples and supporting personal and family cancer history data. In response to announcement (CA-00-025; P30 CA06927S2), the Fox Chase Cancer Center''s Biosample Repository (BR) and Tumor Bank Facility (TBF) is making blood specimens (i.e., whole blood, plasma, platelet-rich plasma, platelet homogenates, red blood cells, leukocytes, lymphoblastoid cell lines, and DNA isolated from leukocytes) and tumor tissues (i.e., multi-tissue microarrays and tumor DNAs) collected by our facilities available for research. Request for blood and tissue will be reviewed by a panel of scientists and ranked. Priority will be given to those investigators with current NIGH/NCI funding, but will be made available as recommended by the internal and external advisory committees. * Blood Inventory: Plasma, Serum, Whole Blood, Lymphocytes, DNA * Tissue Inventory: Tumor and Normal Adjacent Tissue, Fresh-Frozen, Formalin-Fixed Paraffin-Embedded Tissue, OCT Embedded Tissue, Ethanol-fixed Tissue | blood, whole blood, serum, lymphocyte, plasma, platelet-rich plasma, platelet homogenates, red blood cell, leukocyte, lymphoblastoid cell line, dna, tumor tissue, normal adjacent tissue, multi-tissue microarray, tumor dna, fresh-frozen, formalin-fixed paraffin-embedded, oct embedded, ethanol-fixed, cancer, control, tumor |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Fox Chase Cancer Center |
Cancer, Control | Public: In response to announcement (CA-00-025; P30 CA06927S2), The Fox Chase Cancer Center''s Biosample Repository (BR) and Tumor Bank Facility (TBF) is making blood specimens and tumor tissues collected by our facilities available for research. Priority will be given to those investigators with current NIGH/NCI funding, But will be made available as recommended by the internal and external advisory committees. | nlx_75230 | SCR_004746 | SciCrunch Registry | Fox Chase Cancer Center Biosample Repository Core Facility, Fox Chase BRCF, Fox Chase Cancer Center Biosample Repository, Fox Chase Tumor Bank, FCCC Biosample Repository Core Facility | 2026-10-17 01:32:47 | 0 | ||||||
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Case Comprehensive Cancer Center Biorepository and Tissue Processing Core Facility Resource Report Resource Website |
Case Comprehensive Cancer Center Biorepository and Tissue Processing Core Facility (RRID:SCR_004382) | BTPC | biomaterial supply resource, material resource, tissue bank | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. The Case Comprehensive Cancer Center''s Biorepository and Tissue Processing Core Facility (BTPC) serves two primary functions: 1. To build an inventory of remnant human tissues, blood and other body fluids (collectively termed biospecimens) targeted towards cancer and other medical research, for later assignment to investigators; and 2. To provide long term, controlled storage of biospecimens for specific researchers. These samples are for research purposes only and may not be used for clinical diagnosis or implantation into humans. Clinical information relating to the samples and donors are collected and maintained in a secure database. Samples and data are de-identified or de-linked before release to the researcher unless he/she has specific IRB approval to gain access to this information. Remnant biospecimens are prospectively collected from surgical procedures, autopsies and clinical laboratories for the BTPC by the Human Tissue Procurement Facility (HTPF), which operates under UH-IRB Protocol 01-02-45. Blood and bone marrow specimens are collected for the BTPC by the Hematopoietic Stem Cell Core Facility (HSCC), which operates under UH-IRB Protocol 09-90-195. The Division of Surgical Pathology at University Hospitals Case Medical Center (UHCMC) has clinical archives of paraffin blocks that can be made available through the BTPC for retrospective research studies under the approval of the Vice Chair for Clinical Affairs at UHCMC. Surgical Pathologists associated with the BTPC are responsible for determining which blocks can be made available and how much material can be removed from the blocks. Types of Tissue Available * Malignant, benign, diseased, normal and normal human tissues * Normal adjacent tissues available paired with tumor specimens in many cases * Tissues are collected from over 50 anatomic sites * Frozen specimens, OCT-embedded and paraffin-embedded tissues * Large array of paraffin-embedded specimens from clinical archives of paraffin blocks and QC research blocks maintained by the HTPF * Peripheral blood and bone marrow samples from initial visits and follow-up procedures are processed to obtain serum and cell fractions for storage * No samples are collected from individuals with known infectious illnesses * Fetal biospecimens are not collected due to state and local statutes | tissue, blood, body fluid, bone marrow, stem cell, serum, cell fraction, paraffin block, clinical data, malignant tissue, benign tissue, diseased tissue, normal tissue, cancer, control, research, frozen, oct-embedded, paraffin-embedded, tumor, paraffin, oct |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Case Western Reserve University Case Comprehensive Cancer Center |
Cancer, Control, Tumor | NCI P30 CA43703 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_39515 | http://cancer.case.edu/sharedresources/biorepository/ | SCR_004382 | SciCrunch Registry | Case Western Biorepository, Case Western Reserve University: Biorepository and Tissue Processing Core Facility, CWRU BTPC, Biorepository and Tissue Processing Core Facility of the Case Comprehensive Cancer Center, Case BTPC, Case Comprehensive Cancer Center Biorepository Tissue Processing Core Facility, Case CCC BTPC, Case Comprehensive Cancer Center Biorepository and Tissue Processing Core Facility, Biorepository Tissue Processing Core Facility, Case Western Biorepository and Tissue Processing Core Facility, CWRU CCC Biorepository Tissue Processing Core Facility, Case CCC Biorepository Tissue Processing Core Facility | 2026-10-17 01:32:57 | 0 | ||||
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Biobank of Hospital Clinic - IDIBAPS Resource Report Resource Website 1+ mentions |
Biobank of Hospital Clinic - IDIBAPS (RRID:SCR_004530) | biomaterial supply resource, material resource, tissue bank | A biobank of repositories which works to obtain, store, manage and distribute large collections of human biological samples of phenotypes and diseases of marked interest for researchers. The biobank sample collection is made up of three extensive repositories. The Neurological Tissue Biobank is a nervous tissue repository (brain and spinal cord) created from donations from cadavers with or without neurological conditions. It helps facilitate research in neurological illnesses. The Tumour Biobank and Anatomical Pathologies Collections is a repository of tumorous tissue and samples from cancer patients. The Blood and Fluid Biobank is a repository which contains samples of metabolic, inflammatory bowel, hepatic, digestive and maternal and foetal diseases, among others. It houses a large range of samples of scientific interest, primarily DNA, serum and plasma. | biobank, neurological, nervous tissue, tumorous tissue, cancer, blood, serum, plasma, dna, standardized biobanking, biomaterial supply resource | is listed by: One Mind Biospecimen Bank Listing | Neurological disease, Alzheimer's disease, Creutzfeldt-Jakob syndrome, Parkinson's disease, Lewy Body disease, Amyotrophic lateral sclerosis, Huntington's disease, Tumor, Cancer, Metabolic disease, Inflammatory bowel disease, Hepatic disease, Digestive disease, Maternal disease, Fetal disease, Autoimmune Liver disease, Cholestasis, Fragile X syndrome, Genetic mental retardation, Monogenetic dementia, Acute coronary syndrome, Human immunodeficiency virus | Available to the scientific community, Sample requests are reviewed to ensure that the best possible use is made of the samples, Requests are made through an online form, Users will be contacted to go over the terms and conditions for collaboration | nlx_51631 | SCR_004530 | SciCrunch Registry | Hospital Clinic Barcelona - IDIBAPS biobank, Biobank of Hospital Clinic Barcelona IDIBAPS | 2026-10-17 01:33:56 | 2 | |||||||
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Loma Linda University Cancer Center Biospecimen Laboratory Resource Report Resource Website 1+ mentions |
Loma Linda University Cancer Center Biospecimen Laboratory (RRID:SCR_004767) | LLU Cancer Center Biospecimen Laboratory | biomaterial supply resource, material resource, tissue bank | The Loma Linda University Cancer Center Biospecimen Laboratory provides specimens for researchers as they search for the causes of cancer, and look for new means of prevention and treatment. The specimens include tissues, blood products (blood cell, plasma and serum) and bone marrow cells. Researchers interested in gaining access to the Biospecimen Laboratory''s samples should email Dr. Saied Mirshahidi, requesting access. The number and types of samples we have available for research can be viewed, http://www.llu.edu/catissuesummary/. Use the Biospecimen Laboratory Tissue Request Form to request specimens for research studies. |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Loma Linda University; California; USA |
Cancer | nlx_76868 | SCR_004767 | SciCrunch Registry | 2026-10-17 01:32:48 | 1 | |||||||||
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Hackensack University Tissue Bank Resource Report Resource Website |
Hackensack University Tissue Bank (RRID:SCR_004956) | JTCC Tissue Bank | biomaterial supply resource, material resource, tissue bank | The Tissue Bank stores tissue, blood, and bone marrow samples that have been taken from patients who have given their consent after they have undergone biopsies, surgery, or other procedures for cancer at the John Theurer Cancer Center. Our scientists use these samples to analyze and study multiple types of human cancer, with a goal toward learning more about how cancer develops, developing innovative new treatments, and determining how well a treatment is working. Our Tissue Bank is overseen by our program and medical director, Andre Goy, M.D., M.S., who is also deputy director of the Cancer Center and chief of the Division of Lymphoma; and our scientific director, K. Stephen Suh, Ph.D. Currently, 30 percent of our Tissue Bank team members work in our clinics, and 70 percent of our team works ����?��������??behind the scenes,����?��������?? conducting important scientific research without meeting patients. | tissue, blood, bone marrow, cancer, tumor |
is listed by: One Mind Biospecimen Bank Listing has parent organization: John Theurer Cancer Center |
Cancer | Private: Our scientists use these samples to analyze and study multiple types of human cancer, With a goal toward learning more about how cancer develops, Developing innovative new treatments, And determining how well a treatment is working. | nlx_92521 | http://humccancer.org/spotlight/tissue-bank | SCR_004956 | SciCrunch Registry | HUMC Tissue Bank, John Theurer Cancer Center Tissue Bank | 2026-10-17 01:32:49 | 0 | |||||
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St. Gallen Lung Biopsy Biobank Resource Report Resource Website 1+ mentions |
St. Gallen Lung Biopsy Biobank (RRID:SCR_004971) | SGLBB | biomaterial supply resource, material resource, tissue bank | St. Gallen Lung Biopsy Biobank is a tissue and blood sample collation (biobank) of all patients willing to give informed consent, who are undergoing bronchoscopy and/or surgical lung resection in their diagnostic pathway for any pulmonary disease. The special feature of the proposed biobank is the collection of endobronchial biopsies, blood, and molecularly defined cell populations from tumor tissue in a quality suitable for mRNA and other protein expression techniques, which is not possible by standard biobanks. | tissue, blood, tumor tissue, cell, cancer, lung disease, lung cancer, pulmonary disease, tumor, lung tumor | is listed by: One Mind Biospecimen Bank Listing | Cancer, Lung disease, Lung cancer, Pulmonary disease, Lung tumor | nlx_143987 | SCR_004971 | SciCrunch Registry | St. Gallen Lung Biopsy Biobank - An interdisciplinary collaboration in pulmonary medicine | 2026-10-17 01:32:50 | 1 | |||||||
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NCI-Frederick Resource Report Resource Website 1+ mentions |
NCI-Frederick (RRID:SCR_004880) | FNLCR | access service resource, core facility, service resource | A federally funded research and development center dedicated to biomedical research. NCI-Frederick partners with university, government, and corporate scientists to speed the translation of laboratory research into new diagnostic tests and treatments for cancer and HIV/AIDS. NCI-Frederick is comprised of more than 2,800 government- and contractor-employed biomedical researchers, laboratory technicians, and support staff and several cancer research centers. The FNLCR provides quick response capabilities and meets special long-term research and development needs for NCI that cannot be met as effectively by existing in-house or contractor resources. | cancer, aids, research, treatment, technology |
has parent organization: National Cancer Institute is parent organization of: DAVID is parent organization of: NCI Mouse Repository is parent organization of: Database for Annotation Visualization and Integrated Discovery is parent organization of: Retroviral Tagged Cancer Gene Database is parent organization of: Cancer Imaging Archive (TCIA) is parent organization of: AVIA |
Cancer | NIH | Available to the research community | Wikidata: Q28405614, nlx_155984, ISNI: 0000 0004 0535 8394, grid.418021.e, nlx_85397, SCR_011245 | https://ror.org/03v6m3209 | http://www.ncifcrf.gov/ | SCR_004880 | SciCrunch Registry | NCI Frederick National Laboratory for Cancer Research, Frederick National Laboratory for Cancer Research, Frederick National Lab | 2026-10-17 01:34:00 | 2 | |||
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University of Texas Tumor Bank Resource Report Resource Website |
University of Texas Tumor Bank (RRID:SCR_005048) | UTMB SCCCB Human Tumor Bank Core | biomaterial supply resource, material resource, tissue bank | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 2, 2016. | tissue, tumor tissue, dna, rna, frozen, paraffin, fresh, cancer, tumor |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Texas Medical Branch at Galveston |
Cancer, Tumor | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_99346 | SCR_005048 | SciCrunch Registry | UTMB Human Tumor Bank Core, University of Texas Medical Branch Human Tumor Bank Core, UTMB Tumor Bank, UTMB Sealy Center for Cancer Cell Biology Human Tumor Bank Core, SCCCB Human Tumor Bank Core | 2026-10-17 01:32:50 | 0 | ||||||
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Oncotator Resource Report Resource Website 100+ mentions |
Oncotator (RRID:SCR_005183) | Oncotator | analysis service resource, data analysis service, production service resource, service resource | A tool for annotating human genomic point mutations and indels with data relevant to cancer researchers. Genomic Annotations, Protein Annotations, and Cancer Annotations are aggregated from many resources. A standalone version of Oncotator is being developed. | annotate, genomic, point mutation, indel, mutation, genome, protein, variant |
is listed by: OMICtools has parent organization: Broad Institute |
Cancer | OMICS_00178 | SCR_005183 | SciCrunch Registry | 2026-10-17 01:33:05 | 223 | ||||||||
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Mouse Tumor Biology Database Resource Report Resource Website 1+ mentions |
Mouse Tumor Biology Database (RRID:SCR_006517) | MTB | data or information resource, database | Database supports use of mouse model system for human cancer by providing comprehensive resource for data and information on various tumor models. | endogenous, knock out mouse, hybrid, inbred mouse strain, induced, mouse, mutant, pathology, tumor, gene, organ, strain, genetics, pathology, image, gene expression |
is related to: Mouse Genome Informatics (MGI) has parent organization: Jackson Laboratory |
Cancer, Tumor, Hereditary cancer | NCI CA089713 | PMID:18432250 PMID:21282667 |
The community can contribute to this resource, Acknowledgement requested, For research and educational purposes, Non-commercial, Without the prior express written permission | nif-0000-03163, SCR_017516 | http://tumor.informatics.jax.org/mtbwi/index.do | SCR_006517 | SciCrunch Registry | MGI: MTB Database, Mouse Tumor Biology (MTB) Database, MTB Database, MTB: Mouse Tumor Biology Database | 2026-10-17 01:34:15 | 9 | |||
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HIstome: The Histone Infobase Resource Report Resource Website 1+ mentions |
HIstome: The Histone Infobase (RRID:SCR_006972) | HIstome | data or information resource, database | Database of human histone variants, sites of their post-translational modifications and various histone modifying enzymes. The database covers 5 types of histones, 8 types of their post-translational modifications and 13 classes of modifying enzymes. Many data fields are hyperlinked to other databases (e.g. UnprotKB/Swiss-Prot, HGNC, OMIM, Unigene etc.). Additionally, this database also provides sequences of promoter regions (-700 TSS +300) for all gene entries. These sequences were extracted from the UCSC genome browser. Sites of post-translational modifications of histones were manually searched from PubMed listed literature. Current version contains information for about ~50 histone proteins and ~150 histone modifying enzymes. HIstome is a combined effort of researchers from two institutions, Advanced Center for Treatment, Research and Education in Cancer (ACTREC), Navi Mumbai and Center of Excellence in Epigenetics (CoEE), Indian Institute of Science Education and Research (IISER), Pune. | histone, protein, enzyme, modifying enzyme, post-translational modification, variant, promoter region, gene, epigenetic regulation, india, bio.tools |
is listed by: re3data.org is listed by: Debian is listed by: bio.tools has parent organization: ACTREC - Advanced Centre for Treatment Research and Education in Cancer |
Cancer | ACTREuropean Union - Advanced Centre for Treatment Research and Education in Cancer ; Government of India |
PMID:22140112 | Free, Public, Acknowledgement requested | biotools:histome, r3d100010977, nlx_151419 | http://www.actrec.gov.in/histome/, https://bio.tools/histome, https://doi.org/10.17616/R3RD0R | http://www.histome.net/ | SCR_006972 | SciCrunch Registry | 2026-10-17 01:33:06 | 1 | |||
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NCI Breast and Colon Cancer Family Registries Resource Report Resource Website 1+ mentions |
NCI Breast and Colon Cancer Family Registries (RRID:SCR_006664) | Breast and Colon CFR | biomaterial supply resource, material resource, tissue bank | The Breast Cancer Family Registry (Breast CFR) and the Colon Cancer Family Registry (Colon CFR) were established by the National Cancer Institute (NCI) as a unique resource for investigators to use in conducting studies on the genetics and molecular epidemiology of breast and colon cancer. Known collectively as the CFRs, they share a central goal: the translation of research to the clinical and prevention settings for the benefit of Registry participants and the general public. The CFRs are particularly interested in: * Identifying and characterizing cancer susceptibility genes; * Defining gene-gene and gene-environment interactions in cancer etiology; and * Exploring the translational, preventive, and behavioral implications of research findings. The CFRs do not provide funding for studies; however, researchers can apply to access CFR data and biospecimens contributed by thousands of families from across the spectrum of risk for these cancers and from population-based or relative controls. Special features of the CFRs include: * Population-based and clinic-based ascertainment; * Systematic collection of validated family history; * Epidemiologic risk factor , clinical, and followup data; * Biospecimens (including tumor blocks and Epstein-Barr virus (EBV)-transformed cell lines); * Ongoing molecular characterization of the participating families; and * A combined informatics center. | breast, colon, breast cancer, colon cancer, biospecimen, tumor block, epstein-barr virus-transformed cell line, cell line, cancer, tumor |
is listed by: One Mind Biospecimen Bank Listing has parent organization: National Cancer Institute |
Breast cancer, Colon cancer, Cancer, Tumor | NCI | Public: Researchers can apply to access CFR data and biospecimens contributed by thousands of families from across the spectrum of risk for these cancers and from population-based or relative controls. | nlx_143711 | SCR_006664 | SciCrunch Registry | 2026-10-17 01:33:04 | 3 | ||||||
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ChimerDB Resource Report Resource Website 10+ mentions |
ChimerDB (RRID:SCR_007596) | data or information resource, database | Knowledgebase of fusion transcripts collected from various public resources such as the Sanger CGP, OMIM, PubMed, and Mitelman's database. It is an alignment viewer to facilitate examining reliability of fusion transcripts and inferring functional significance., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | knowledge base, fusion transcript, transcript alignment, alignment viewer | has parent organization: Ewha Womans University; Seoul; South Korea | Tumor, Cancer | Korean Ministry of Education Science and Technology ; Gwangju Institute of Science and Technology ; Korean Ministry of Science and Technology R01-2008-000-20818-0; Korean Ministry of Science and Technology 2007-03983; National Core Research Center R15-2006-020; Korean Rural Development Administration 20070401034010 |
PMID:19906715 PMID:16381848 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02659 | http://genome.ewha.ac.kr/ChimerDB/ | SCR_007596 | SciCrunch Registry | 2026-10-17 01:34:24 | 29 | |||||
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CTDatabase Resource Report Resource Website 100+ mentions |
CTDatabase (RRID:SCR_007614) | data or information resource, database | A database of information about each Cancer-Testis (CT) gene, its gene products and the immune response induced in cancer patients by these proteins. CT antigens are proteins normally expressed only in the human germ line but that are also present in a significant subset of malignant tumors. The practical importance of these proteins is that due to their restricted expression pattern they are frequently recognized by the immune system of cancer patients. Moreover, this antigenicity has raised the possibility of their being used as vaccines to actively stimulate immune responses in order to combat tumor growth. As a result worldwide research into many aspects of CT antigens is rapidly growing prompting the construction of this database as a resource for investigators involved in this area. | data set, FASEB list | is listed by: 3DVC | Cancer | nif-0000-02704 | SCR_007614 | SciCrunch Registry | CTDatabase | 2026-10-17 01:34:25 | 109 | ||||||||
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DriverDB Resource Report Resource Website 10+ mentions |
DriverDB (RRID:SCR_007736) | DriverDB | data or information resource, database | A database for cancer driver gene/mutation that incorporates a huge amount of exome-seq data, annotation databases (such as dbSNP, 1000 Genome and Cosmic), and published bioinformatics algorithms dedicated to driver gene/mutation identification. | gene, mutation |
is listed by: OMICtools has parent organization: National Yang-Ming University; Taipei; Taiwan |
Cancer | PMID:24214964 | OMICS_00268 | SCR_007736 | SciCrunch Registry | DriverDB: A database for cancer driver gene/mutation | 2026-10-17 01:33:47 | 25 | ||||||
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CanPredict Resource Report Resource Website 1+ mentions |
CanPredict (RRID:SCR_008216) | CanPredict | analysis service resource, data analysis service, production service resource, service resource | Web application that uses a combination of computational methods to identify those changes most likely to be cancer-associated. |
is listed by: OMICtools has parent organization: University of California at San Francisco; California; USA |
Cancer | OMICS_00142 | SCR_008216 | SciCrunch Registry | CanPredict: A computational tool for predicting Cancer-associated mutations | 2026-10-17 01:33:26 | 3 | ||||||||
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STRIDE Virtual Biospecimen Bank Resource Report Resource Website 10+ mentions |
STRIDE Virtual Biospecimen Bank (RRID:SCR_008667) | STRIDE Biospecimen Data Repository, STRIDE Biospecimen Locator | biomaterial supply resource, material resource, tissue bank | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 7th, 2023. An online, searchable record of biospecimen attributes and storage location for the following three biobanks at Stanford: * The Bone Marrow Transplant (BMT) program * The Hematology biospecimen bank is a research sample repository focusing on blood, plasma and bone marrow, primarily from leukemia patients. * Cancer Center Pathology Core: The Stanford Comprehensive Cancer Center Tissue Bank stores research samples of both solid tumor and blood from cancer patients, with an emphasis on prostate. As of November 2009, the system contains data on 50,000 biospecimens stored in multiple banks at Stanford. An anonymous Biospecimen Locator allows Stanford researchers to search the STRIDE Virtual Biospecimen Bank for suitable samples without having to know, or expose, any protected patient-specific information. Having determined that suitable specimens exist in one of the constituent biospecimens banks, the researcher can generate a Web-based request form to obtain additional information from the appropriate bank operator(s). Access to specimens is restricted to Stanford Faculty and Staff or affiliates., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | clinical data, biospecimen, data management, blood, plasma, bone marrow, solid tumor, prostate, tumor, leukemia, cancer |
is listed by: One Mind Biospecimen Bank Listing is listed by: Biositemaps has parent organization: Stanford Translational Research Integrated Database Environment and Clinical Data Warehouse |
Leukemia, Cancer | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-33378 | SCR_008667 | SciCrunch Registry | STRIDE Anonymous Biospecimen Locator, STRIDE Anonymous Biospecimen Search Tool, STRIDE J2EE-based biospecimen registration management tracking and distribution system | 2026-10-17 01:34:03 | 17 | ||||||
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Proteomic Data Commons Resource Report Resource Website 100+ mentions |
Proteomic Data Commons (RRID:SCR_018273) | PDC | analysis service resource, data or information resource, data repository, database, production service resource, service resource, storage service resource | Portal to make cancer related proteomic datasets easily accessible to public. Facilitates multiomic integration in support of precision medicine through interoperability with other resources. Developed to advance our understanding of how proteins help to shape risk, diagnosis, development, progression, and treatment of cancer. One of several repositories within NCI Cancer Research Data Commons which enables researchers to link proteomic data with other data sets (e.g., genomic and imaging data) and to submit, collect, analyze, store, and share data throughout cancer data ecosystem. PDC provides access to highly curated and standardized biospecimen, clinical, and proteomic data, intuitive interface to filter, query, search, visualize and download data and metadata. Provides common data harmonization pipeline to uniformly analyze all PDC data and provides advanced visualization of quantitative information. Cloud based (Amazon Web Services) infrastructure facilitates interoperability with AWS based data analysis tools and platforms natively. Application programming interface (API) provides cloud-agnostic data access and allows third parties to extend functionality beyond PDC. Structured workspace that serves as private user data store and also data submission portal. Distributes controlled access data, such as patient-specific protein fasta sequence databases, with dbGaP authorization and eRA Commons authentication. | Cancer, proteomic, data, precision medicine, diagnosis, treatment, analysis, biospeciment, clinical data, metadata |
is related to: Cancer Research Data Commons has parent organization: National Cancer Institute |
cancer | Restricted | SCR_018273 | SciCrunch Registry | 2026-10-17 01:29:23 | 102 | ||||||||
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NCI Imaging Data Commons Resource Report Resource Website 1+ mentions |
NCI Imaging Data Commons (RRID:SCR_019127) | NCI IDC | data or information resource, data repository, disease-related portal, portal, service resource, storage service resource, topical portal | Portal for finding and analyzing cancer imaging data. Part of Cancer Research Data Commons to support cancer imaging research. Provides cloud based access to medical imaging data and library of analytical tools and workflows to share, analyze, and visualize multi modal imaging data from both clinical and basic cancer research studies. | Imaging Data Commons Data, cloud based data analysis, FAIR data, cancer imaging data, metadata |
uses: DICOM standard is related to: FAIRsharing is related to: Cancer Imaging Archive (TCIA) is related to: Cancer Research Data Commons |
Cancer | NIH | Free, Freely available | r3d100014074 | https://doi.org/10.17616/R31NJNCQ | SCR_019127 | SciCrunch Registry | National Cancer Institute Imaging Data Commons | 2026-10-17 01:30:18 | 9 |
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