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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
California National Primate Research Center
 
Resource Report
Resource Website
10+ mentions
California National Primate Research Center (RRID:SCR_006426) CNPRC data or information resource, organization portal, portal Center for investigators studying human health and disease, offering the opportunity to assess the causes of disease, and new treatment methods in nonhuman primate models that closely recapitulate humans. Its mission is to provide interdisciplinary programs in biomedical research on significant human health-related problems in which nonhuman primates are the models of choice. NPRC, NPRC Consortium, ORIP, drug, genetic, animal, biology, cause, cell, cynamolous, developmental, disease, health, human, immunology, model, nonhuman primate, physiology, primate, procedure, psychology, reproductive, surgery, surgical, therapy, titi, treatment, veterinarian, virology is listed by: Biositemaps
is listed by: National Primate Research Center Consortium
has parent organization: University of California at Davis; California; USA
is parent organization of: California National Primate Research Center Analytical and Resource Core
NCRR P51 RR000169;
NIH Office of the Director P51 OD011107;
NIH Office of the Director U42 OD010990
Free, Freely available, nif-0000-24356 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models http://www.cnprc.ucdavis.edu SCR_006426 2026-08-29 11:28:44 21
Human Brain Atlas
 
Resource Report
Resource Website
1+ mentions
Human Brain Atlas (RRID:SCR_006131) Human Brain Atlas atlas, data or information resource, video resource A labeled three-dimensional atlas of the human brain created from MRI images. In conjunction are presented anatomically labeled stained sections that correspond to the three-dimensional MRI images. The stained sections are from a different brain than the one which was scanned for the MRI images. Also available the major anatomical features of the human hypothalamus, axial sections stained for cell bodies or for nerve fibers, at six rostro-caudal levels of the human brain stem; images and Quicktime movies. The MRI subject was a 22-year-old adult male. Differing techniques used to study the anatomy of the human brain all have their advantages and disadvantages. Magnetic resonance imaging (MRI) allows for the three-dimensional viewing of the brain and structures, precise spatial relationships and some differentiation between types of tissue, however, the image resolution is somewhat limited. Stained sections, on the other hand, offer excellent resolution and the ability to see individual nuclei (cell stain) or fiber tracts (myelin stain), however, there are often spatial distortions inherent in the staining process. The nomenclature used is from Paxinos G, and Watson C. 1998. The Rat Brain in Stereotaxic Coordinates, 4th ed. Academic Press. San Diego, CA. 256 pp human, adult, mri, fiber stain, anatomy, normal, neuroanatomy, nissl stain, image, brainstem, cell body, nerve fiber, brain, coronal, sagittal, horizontal, 3d model, montage, weil, hypothalamus is used by: NIF Data Federation
has parent organization: Michigan State University; Michigan; USA
NSF IBN 0131267;
NSF 0131826;
NSF 0131028
Copyrighted, Public, Request that you secure their permission, Acknowledgement required nif-0000-00088 SCR_006131 MSU Brain Biodiversity Bank - Human Brain Atlas, Michigan State University Brain Biodiversity Bank - Human Brain Atlas 2026-08-29 11:28:37 3
Colorado Assessment Tests - Card Sort
 
Resource Report
Resource Website
Colorado Assessment Tests - Card Sort (RRID:SCR_007331) data processing software, software application, software resource THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 16, 2013. CATs Card Sort is a free, general purpose card sorting program which allows the user to design sorting tasks similar to those described by Vigotsky (1934), Weigel (1941), and Grant and Berg (1948). Card sorting tasks have been shown to be particularly sensitive to frontal lobe dysfunction, but have also shown sensitivity to motor disorders, schizophrenia, chronic alcoholism, aging, and attention deficit disorder. The CATs Card Sort package provides extensive flexibility in the development of stimulus cards, allowing the experimenter to define the relevant dimensions of cards in terms of figures, letters or words, figure/letter/word color, card color, figure/letter numerosity, and a user defined dimension. Considerable flexibility is also provided in designing lists of to be sorted cards, sort criteria, and the criteria for sort classification shift. The package also provides limited analysis capabilities as described by Grant and Berg (1948). However, as with all CATs packages raw data can be copied to the clipboard in a format acceptable for import into commonly available spreadsheets such as Excel allowing the user to design analysis routines appropriate to their needs. frontal lobe, alcoholism, attention deficit disorder, card sorting task, disfunctional, human, motor disorder, schizophrenia has parent organization: University of Colorado; Colorado Springs; USA Aging THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-00210 SCR_007331 Card Sort 2026-08-29 11:28:46 0
B Cell Interactome
 
Resource Report
Resource Website
1+ mentions
B Cell Interactome (RRID:SCR_008655) BCI data or information resource, database, model A network of protein-protein, protein-DNA and modulatory interactions in human B cells. The network contains known interactions (reported in public databases) and predicted interactions by a Bayesian evidence integration framework which integrates a variety of generic and context specific experimental clues about protein-protein and protein-DNA interactions with inferences from different reverse engineering algorithms, such as GeneWays and ARACNE. Modulatory interactions are predicted by the MINDY, an algorithm for the prediction of modulators of transcriptional interactions (please refer to the publication section for more information). The BCI can be downloaded as one tab delimited file containing the complete network (BCI.txt) with each type of interaction explicitly defined. expression, generic, bayesian, b cell, dna, human, interaction, interactome, modulatory, protein, transcriptional is related to: ARACNE
has parent organization: Columbia University; New York; USA
PMID:18277385 Available for download nif-0000-33034 SCR_008655 2026-08-29 11:28:45 1
Visual Statistics Group
 
Resource Report
Resource Website
100+ mentions
Visual Statistics Group (RRID:SCR_008317) data or information resource, organization portal, portal The general goal is to achieve a deeper understanding of natural image statistics because from this knowledge it should be possible to explain the behavior of the visual cortex and propose new alternatives in a number of applications in image processing and computer vision in which the basic problem is the choice of an appropriate signal representation. The range of basic and applied topics in which we are currently working include: * Mathematical models of human vision * Statistical image models * Image distortion metrics * Image coding * Motion estimation * Video coding * Image restoration * Color representation behavior, color, cortex, human, mathematical, natural, statistic, visual, image nif-0000-24683 SCR_008317 VISTA 2026-08-29 11:28:48 447
ICBM 152 Nonlinear atlases version 2009
 
Resource Report
Resource Website
100+ mentions
ICBM 152 Nonlinear atlases version 2009 (RRID:SCR_008796) atlas, data or information resource, reference atlas Unbiased standard magnetic resonance imaging template brain volume for normal population. These volumes were created using data from ICBM project. 6 different templates are available: * ICBM 2009a Nonlinear Symmetric - template which includes T1w,T2w,PDw modalities, also T2 relaxometry (T2 values calculated for each subject using single dual echo PD/T2 scan), and tissue probabilities maps. Also included lobe atlas used for ANIMAL+INSECT segmentation, brain mask, eye mask and face mask. Intensity inhomogeneity was performed using N3 version 1.10.1. * ICBM 2009a Nonlinear Asymmetric template - template which includes T1w,T2w,PDw modalities, and tissue probabilities maps. Intensity inhomogeneity was performed using N3 version 1.10.1. Also included brain mask, eye mask and face mask. * ICBM 2009b Nonlinear Symmetric - template which includes only T1w,T2w and PDw modalities. * ICBM 2009b Nonlinear Asymmetric - template which includes only T1w,T2w and PDw modalities. * ICBM 2009c Nonlinear Symmetric - template which includes T1w,T2w,PDw modalities, and tissue probabilities maps. Also included lobe atlas used for ANIMAL+INSECT segmentation, brain mask, eye mask and face mask. Intensity inhomogeneity was performed using N3 version 1.11. Sampling is different from 2009a template. * ICBM 2009c Nonlinear Asymmetric template - template which includes T1w,T2w,PDw modalities, and tissue probabilities maps. Intensity inhomogeneity was performed using N3 version 1.11 Also included brain mask, eye mask and face mask.Sampling is different from 2009a template. All templates are describing the same anatomy, but sampling is different. Also, different versions of N3 algorithm produces slightly different tissue probability maps. Tools for using these atlases can be found in the Software section. Viewing the multiple atlas volumes online requires Java browser support. You may also download the templates - see licensing information. magnetic resonance imaging, brain, human, normal is related to: MINC/Atlases
is related to: bic-mni-models
has parent organization: McConnell Brain Imaging Center
nlx_144297 SCR_008796 , BIC ICBM 152 Nonlinear atlases version 2009 2026-08-29 11:28:51 278
NIHPD Objective 1 atlases (4.5 - 18.5y)
 
Resource Report
Resource Website
10+ mentions
NIHPD Objective 1 atlases (4.5 - 18.5y) (RRID:SCR_008794) NIHPD Objective 1 atlases (4.518.5y) atlas, data or information resource, reference atlas An unbiased standard magnetic resonance imaging template brain volume for pediatric data from the 4.5 to 18.5y age range. These volumes were created using data from 324 children enrolled in the NIH-funded MRI study of normal brain development (Almli et al., 2007, Evans and Group 2006). Tools for using these atlases can be found in the Software section. To view the atlases online, click on the appropriate JIV2 link in the Download section. You can download templates constructed for different age ranges. For each age range you will get an average T1w, T2w, PDw maps normalized between 0 and 100 and tissue probability maps, with values between 0 and 1. Also each age range includes a binary brain mask. pediatric, human, mri, brain, child, young human has parent organization: McConnell Brain Imaging Center Normal brain development, Aging PMID:20656036 nlx_144295 SCR_008794 BIC NIHPD Objective 1 atlases (4.518.5y), McConnell Brain Imaging Center NIHPD Objective 1 atlases (4.518.5y) 2026-08-29 11:28:39 11
UBC National Core for Neuroethics
 
Resource Report
Resource Website
UBC National Core for Neuroethics (RRID:SCR_008063) data or information resource, job resource, organization portal, portal It is an interdisciplinary research group dedicated to tackling the ethical, legal, policy and social implications of frontier technological developments in the neurosciences. Our objective is to align innovations in the brain sciences with societal, cultural and individual human values through high impact research, education and outreach. The Core''s major research projects are focused on high impact, high visibility areas including the use of drugs and devices for neuroenhancement, ethics in neurodegenerative disease and regenerative medicine research, international and cross-cultural challenges in brain research, neuroimaging in the private sector, and the ethics of personalized medicine, among others. Members of the Core also lead initiatives aside from their research projects. Sponsors: This Core is supported by the University of Brititsh Columbia. drug, education, ethic, ethical, brain, brain science, human, implication, legal, neurodegenerative disease, neuroenhancement, neuroethics, neuroscience, outreach, policy, regenerative medicine, social, technological development, neuroimaging has parent organization: University of British Columbia; British Columbia; Canada nif-0000-10478 SCR_008063 University of British Columbia, UBC Neuroethics, National Core for Neuroethics 2026-08-29 11:28:44 0
Network-based Prediction of Human Tissue-specific Metabolism
 
Resource Report
Resource Website
1+ mentions
Network-based Prediction of Human Tissue-specific Metabolism (RRID:SCR_007392) data or information resource, data set THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. Network visualizations in which the expression and predicted flux data are projected over the global human network. These network visualizations are accessible through the supplemental website using the publicly available Cytoscape software (Cline, Smoot et al. 2007). Since many high degree nodes exist in the network, special layouts are required to produce network visualizations that are readily interpretable. To this end we produced network visualizations in which hub nodes are repeated multiple times and hence layouts with a small number of edge crossings can be generated. Contains entries for brain compartments and brain pathways. molecular neuroanatomy resource, brain, pathway, tissue-specific metabolism, human, network-based prediction, cytoscape 2.5, tissue-specific metabolic behavior, network visualization, high degree nodes, hub nodes, currency metabolites, cellular-compartments, cellular compartment, metabolite, cytoplasm, extracellular, lysosome, mitochondrion, nucleus, endoplasmic, peroxisome, metabolic flux is related to: Cytoscape
has parent organization: Tel Aviv University; Ramat Aviv; Israel
THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-00431 SCR_007392 Network-based Prediction of Human Tissue-specific Metabolism 2026-08-29 11:31:54 1
1000 Genomes Project and AWS
 
Resource Report
Resource Website
5000+ mentions
1000 Genomes Project and AWS (RRID:SCR_008801) 1000 Genomes Project and AWS data or information resource, data set A dataset containing the full genomic sequence of 1,700 individuals, freely available for research use. The 1000 Genomes Project is an international research effort coordinated by a consortium of 75 companies and organizations to establish the most detailed catalogue of human genetic variation. The project has grown to 200 terabytes of genomic data including DNA sequenced from more than 1,700 individuals that researchers can now access on AWS for use in disease research free of charge. The dataset containing the full genomic sequence of 1,700 individuals is now available to all via Amazon S3. The data can be found at: http://s3.amazonaws.com/1000genomes The 1000 Genomes Project aims to include the genomes of more than 2,662 individuals from 26 populations around the world, and the NIH will continue to add the remaining genome samples to the data collection this year. Public Data Sets on AWS provide a centralized repository of public data hosted on Amazon Simple Storage Service (Amazon S3). The data can be seamlessly accessed from AWS services such Amazon Elastic Compute Cloud (Amazon EC2) and Amazon Elastic MapReduce (Amazon EMR), which provide organizations with the highly scalable compute resources needed to take advantage of these large data collections. AWS is storing the public data sets at no charge to the community. Researchers pay only for the additional AWS resources they need for further processing or analysis of the data. All 200 TB of the latest 1000 Genomes Project data is available in a publicly available Amazon S3 bucket. You can access the data via simple HTTP requests, or take advantage of the AWS SDKs in languages such as Ruby, Java, Python, .NET and PHP. Researchers can use the Amazon EC2 utility computing service to dive into this data without the usual capital investment required to work with data at this scale. AWS also provides a number of orchestration and automation services to help teams make their research available to others to remix and reuse. Making the data available via a bucket in Amazon S3 also means that customers can crunch the information using Hadoop via Amazon Elastic MapReduce, and take advantage of the growing collection of tools for running bioinformatics job flows, such as CloudBurst and Crossbow. genomic data, genome, cloud computing, cloud, human, gene, genetic variation, research, dna is used by: HmtVar
is related to: Broad Institute Genomics Platform
has parent organization: Amazon Web Services
nlx_144340 SCR_008801 1000 Genomes Project and Amazon Web Services, 000 Genomes Project Amazon Web Services, 1000 Genomes Project AWS 2026-08-29 11:31:58 7076
National Institutes of Health Stem Cell Tables
 
Resource Report
Resource Website
National Institutes of Health Stem Cell Tables (RRID:SCR_008359) NIH Stem Cells data or information resource, data set Data tables providing an overview of information about stem cells that have been derived from mice and humans. The tables summarize published research that characterizes cells that are capable of developing into cells of multiple germ layers (i.e., multipotent or pluripotent) or that can generate the differentiated cell types of another tissue (i.e., plasticity) such as a bone marrow cell becoming a neuronal cell. The tables do not include information about cells considered progenitor or precursor cells or those that can proliferate without the demonstrated ability to generate cell types of other tissues. The tables list the tissue from which the cells were derived, the types of cells that developed, the conditions under which differentiation occurred, the methods by which the cells were characterized, and the primary references for the information. ectoderm, endoderm, adipocyte, astrocyte, bone marrow, brain, cardiac, chondrocyte, differentiation, germ layer, hematopoietic stem cell, human, liver, mesenchymal stem cell, mesoderm, mouse, muscle, neuron, neuronal, osteoblast, pancreas, plasticity, platelet, red blood cell, skeletal, skin, spinal cord, neural stem cell, tenocyte, tissue, white blood cell, stem cell, multipotent stem cell, pluripotent stem cell, embryonic stem cell, embryonic primordial germ cell, primordial germ cell, neural progenitor cell, mesenchymal progenitor cell has parent organization: National Institutes of Health NIH nif-0000-25459 http://stemcells.nih.gov/info/scireport/appendixD.asp SCR_008359 2026-08-29 11:31:54 0
Beth Israel Deaconess Medical Center Genomics Proteomics Bioinformatics and Systems Biology Center
 
Resource Report
Resource Website
Beth Israel Deaconess Medical Center Genomics Proteomics Bioinformatics and Systems Biology Center (RRID:SCR_009668) BIDMC Genomics, Proteomics, Bioinformatics and Systems Biology Center access service resource, core facility, service resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 27, 2023. Core provides services: RT PCR service, Gene expression profiling service, Proteomics analysis service, Bioinformatics and Systems Biology analyses, Next Generation Sequencing Service, Affymetrix Human and Mouse Gene 2.0 ST Arrays and 2.1 ST Arrayplates. Core proteomics facility for the Dana-Farber/Harvard Cancer Center. Workflows and algorithms for analysis of next-generation sequencing data including RNA-Seq, ChIP-Seq, Epigenetics-Seq and DNA seq, Comprehensive workflow for analysis of Microbiome sequencing data, Integrated systems biology analysis of transcriptome, miRNA, epigenome, metabolomics and proteomics data. Pipelines: MALDI Tissue imaging and targeted quantitative proteomics. RT PCR, transcriptome, epigenome, metabolomics, profiling, assay, protein, expression, pathway, data, bioinformatics, analysis, next, generation, sequencing, human, mouse, array, tissue, imaging is listed by: Eagle I
is related to: Beth Israel Deaconess Medical Center Labs and Facilities
is related to: Harvard University Labs and Facilities
has parent organization: Harvard University; Cambridge; Massachusetts
THIS RESOURCE IS NO LONGER IN SERVICE nlx_156126 http://www.bidmcgenomics.org/ SCR_009668 Beth Israel Deaconess Medical Center, BIDMC 2026-08-29 11:32:18 0
Laboratory of Neuro Imaging
 
Resource Report
Resource Website
50+ mentions
Laboratory of Neuro Imaging (RRID:SCR_001922) LONI biomedical technology resource center, training resource Biomedical technology resource center specializing in novel approaches and tools for neuroimaging. It develops novel strategies to investigate brain structure and function in their full multidimensional complexity. There is a rapidly growing need for brain models comprehensive enough to represent brain structure and function as they change across time in large populations, in different disease states, across imaging modalities, across age and sex, and even across species. International networks of collaborators are provided with a diverse array of tools to create, analyze, visualize, and interact with models of the brain. A major focus of these collaborations is to develop four-dimensional brain models that track and analyze complex patterns of dynamically changing brain structure in development and disease, expanding investigations of brain structure-function relations to four dimensions. anatomic, animal, brain, brain function, brain structure, cerebral metabolism, human, mapping, neurobiological, software, neuroimaging, fmri, mri, neuroimaging, software, brain mapping, computational software, magnetic resonance is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: Wavelet Analysis of Image Registration
is related to: Sub-Volume Thresholding Analysis
is related to: jViewbox
is related to: MultiPhase-SEG
is related to: LONI Java Image I/O Plugins
is related to: DualSurfaceMin
is related to: Charged Fluid Model for Brain Image Segmentation
is related to: MINC/Atlases
has parent organization: University of Southern California Keck School of Medicine; California; USA
is parent organization of: Center for Computational Biology at UCLA
is parent organization of: LONI Visualization Tool
is parent organization of: International Consortium for Brain Mapping
is parent organization of: LONI Provenance Editor
is parent organization of: TetraMetrix
is parent organization of: Synchronized Histological Image Viewing Architecture
is parent organization of: LONI ShapeViewer
is parent organization of: LONI ShapeTools
is parent organization of: FFT Library
is parent organization of: Mouse BIRN Atlasing Toolkit
is parent organization of: MGH-USC Human Connectome Project
is parent organization of: Mouse Connectome Project
is parent organization of: LONI Inspector
is parent organization of: Parkinson's Progression Markers Initiative
is parent organization of: BrainSolution
is parent organization of: BrainGraph Editor
is parent organization of: INVIZIAN
is parent organization of: LONI Brain Parser
is parent organization of: LONI De-identification Debablet
is parent organization of: iTools
is parent organization of: Pipeline Neuroimaging VirtualEnvironment
is parent organization of: MultiTracer
is parent organization of: International Consortium for Brain Mapping
NCRR 5 P41 RR013642 LONI Software License nif-0000-10494 http://www.nitrc.org/projects/loni http://loni.ucla.edu/ SCR_001922 UCLA Laboratory of Neuro Imaging, Laboratory of Neuroimaging, UCLA LONI, USC Laboratory of Neuro Imaging 2026-08-29 11:31:47 65
XTRACT
 
Resource Report
Resource Website
1+ mentions
XTRACT (RRID:SCR_024933) software application, software resource Software command line tool for automated tractography. Standardised protocols for automated tractography in human and macaque brain. automated tractography, tractography, human, macaque, brain is a plug in for: FSL Biotechnology and Biological Sciences Research Council ;
Human Connectome Project ;
Marie Skłodowska-Curie Individual Fellowship Grant ;
McDonnell Center for Systems Neuroscience at Washington University ;
Medical Research Council PhD Studentship UK ;
MRC Career Development Fellowship UK ;
Netherlands Organization for Scientific Research NWO Netherlands ;
NIH ;
NIMH 1U54MH091657;
Sir Henry Dale Wellcome Trust Fellowship UK ;
UK Biobank Resource ;
UK Engineering and Physical Sciences Research Council ;
Wellcome Trust Collaborative Award UK ;
Wellcome Trust grant UK ;
Wellcome Trust
PMID:32407993 Free, Freely available SCR_024933 2026-08-29 11:33:37 4
BIDMC Transcranial Magnetic Stimulation Core
 
Resource Report
Resource Website
BIDMC Transcranial Magnetic Stimulation Core (RRID:SCR_011022) BIDMC TMS Core access service resource, core facility, service resource At the Berenson-Allen Center for Noninvasive Brain Stimulation (CNBS) at Beth Israel Deaconess Medical Center and Harvard Medical School we have three distinct missions: Research, Education and Patient Care. Our research explores brain-behavior relations, brain plasticity and its modulation, employing different noninvasive brain stimulation techniques combined with careful task design, electroencephalography, and functional brain imaging. Educational efforts feature several Continuing Medical Education Courses including a week long intensive course in noninvasive brain stimulation offered 3 times per year. Our clinical program offers noninvasive brain stimulation for treatment of neuropsychiatric disorders such as depression and schizophrenia, epilepsy, and chronic pain. Clinical work also includes studies of central motor conduction time, cortical excitability, and noninvasive cortical mapping. consulting, human, transcranial magnetic stimulation, transcranial direct current stimulation is related to: Beth Israel Deaconess Medical Center Labs and Facilities SciEx_9461 http://www.tmslab.org/tmscore-equipment.php http://www.scienceexchange.com/facilities/transcranial-magnetic-stimulation-core-harvard SCR_011022 Beth Israel Deaconess Medical Center Transcranial Magnetic Stimulation Core 2026-08-29 11:32:16 0
National Alzheimer's Coordinating Center
 
Resource Report
Resource Website
50+ mentions
National Alzheimer's Coordinating Center (RRID:SCR_007327) NACC biomaterial supply resource, material resource A clinical research, neuropathological research and collaborative research database that uses data collected from 29 NIA-funded Alzheimer's Disease Centers (ADCs). The database consists of several datasets, and searches may be done on the entire database or on individual datasets. Any researcher, whether affiliated with an ADC or not, may request a data file for analysis or aggregate data tables. Requested aggregate data tables are produced and returned as soon as the queue allows (usually within 1-3 days depending on the complexity). alzheimer's disease, brain, clinical, database, disease, human, neuropathological, neuropathology, specimen, tissue, FASEB list is listed by: One Mind Biospecimen Bank Listing
is related to: Alzheimers Disease Genetics Consortium
is related to: Alzheimers Disease Genetics Consortium
is related to: National Cell Repository for Alzheimer's Disease
has parent organization: University of Washington; Seattle; USA
Alzheimer's disease, Dementing disorder, Dementia NIH Blueprint for Neuroscience Research ;
NIA U01 AG016976
Data are freely available to all researchers nif-0000-00203 SCR_007327 National Alzheimer's Coordinating Center 2026-08-29 11:30:49 54
ZMP
 
Resource Report
Resource Website
10+ mentions
ZMP (RRID:SCR_006161) ZMP biomaterial supply resource, material resource Create knockout alleles in protein coding genes in the zebrafish genome, using a combination of whole exome enrichment and Illumina next generation sequencing, with the aim to cover them all. Each allele created is analyzed for morphological differences and published on the ZMP site. Transcript counting is performed on alleles with a morphological phenotype. Alleles generated are archived and can be requested from this site through the Zebrafish International Resource Center (ZIRC). You may register to receive updates on genes of interest, or browse a complete list, or search by Ensembl ID, gene name or human and mouse orthologue. phenotype, genome, gene, disease model, allele, orthologue, mutant, chromosome, human orthologue, mouse orthologue, mutation, knockout, human, mouse, transcript is listed by: One Mind Biospecimen Bank Listing
is related to: Zebrafish International Resource Center
has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom
Wellcome Trust Sanger Institute; Hinxton; United Kingdom ;
NIH ;
ZF-HEALTH
Free and open nlx_151662 SCR_006161 Zebrafish Mutation Project (ZMP), Zebrafish Mutation Project, ZMP - Zebrafish Mutation Project 2026-08-29 11:30:58 25
Basic Research Immersion Training Experience Veterinary Student Program
 
Resource Report
Resource Website
1+ mentions
Basic Research Immersion Training Experience Veterinary Student Program (RRID:SCR_008305) postdoctoral program resource, training resource The BRITE Veterinary Student Program provides DVM students interested in research with a subsidized, in-depth mentored research experience. The opportunity can be used to gain research experience, to obtain an MS, or to jump-start a DVM/PhD program. The BRITE veterinary student program is designed to expose DVM students to hypothesis-driven research activities, methodologies involved in design and execution of laboratory experiments and ethical issues pertinent to biomedical research, at a formative stage of their veterinary education. BRITE veterinary students are given a unique opportunity to utilize the rigorous didactic basic science training obtained during the first two years of the professional curriculum in pursuit of a research problem relevant to human and animal health. Sponsors: The program is funded by Kansas State University. animal, health, human, mentor, program, research, science, student, veterinary has parent organization: Kansas State University; Kansas; USA nif-0000-24384 http://www.vet.ksu.edu/depts/ap/brite/, http://www.vet.k-state.edu/research/brite/ SCR_008305 BRITE 2026-08-29 11:30:50 7
Comparative Biomedical Sciences Graduate Program
 
Resource Report
Resource Website
1+ mentions
Comparative Biomedical Sciences Graduate Program (RRID:SCR_008304) postdoctoral program resource, training resource The Comparative Biomedical Sciences Graduate Degree program provides exceptional graduate research training in core areas of animal and human health including genomics, immunology, molecular and cellular biology, physiology, infectious disease, neuroscience, pharmacology and toxicology, and oncology. Seventy-five faculty members in a diverse number of UW departments including Bacteriology, Biochemistry, Medical Microbiology and Immunology, Medicine, Oncology, Pathology, Radiology in addition to the 4 departments of the School of Veterinary Medicine are trainers in the program. These internationally recognized professors, as well as the integrative nature of our program, provide outstanding and unique research opportunities for our students. Because the University of Wisconsin is consistently ranked as one of the best 10 graduate institutions in the nation, the strength of our program is not only due to the superb research and teaching of our faculty but also due to the University as a whole. Approximately 55 students, most of whom are Ph.D. candidates, are currently enrolled in the program. Research strategies and academic curricula are tailored to the specific needs of each individual student. Graduates from our program are highly successful in the biotechnology industry and at top-ranked research institutions in the U.S. and abroad. The Comparative Biomedical Sciences Graduate Program offers a diverse number of research opportunities in multiple fields of study. A brief description of some of the major areas of research being performed by faculty affiliated with the Comparative Biomedical Sciences Graduate Program is provided below. Use the pull down menu above or click on the heading to find faculty members doing research in these areas. Sponsors: CBMS is supported by the University of Wisconsin animal, biology, biomedical, cellular, comparative, disease, genomic, health, human, immunology, infectious, medicine, microbiology, molecular, neuroscience, oncology, pharmacology, physiology, radiology, science, toxicology has parent organization: University of Wisconsin-Madison; Wisconsin; USA nif-0000-24383 http://www.vetmed.wisc.edu/pbs/gradprogram/index.shtml SCR_008304 CBMS 2026-08-29 11:31:03 2
Massachusetts University Medical School RNAi Core Facility
 
Resource Report
Resource Website
Massachusetts University Medical School RNAi Core Facility (RRID:SCR_017727) RNAi Core access service resource, core facility, service resource Facility houses complete collections of human and mouse lentiviral short hairpin RNA (shRNA) libraries from Open Biosystems/GE Dharmacon, Mammalian Gene Collection (MGC) cDNA Library, and human and mouse CRISPR/Cas9 GeCKO v2 libraries from Addgene. Human, mouse, lentiviral, short, hairpin, RNA, shRNA, library, core Restricted ABRF_151 SCR_017727 RNAi Core Facility 2026-08-29 11:33:16 0

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    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into NIF you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.