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http://www.mmnt.net/db/0/0/ftp-genome.wi.mit.edu/distribution/GISTIC2.0

Software to identify genes targeted by somatic copy-number alterations (SCNAs) that drive cancer growth. By separating SCNA profiles into underlying arm-level and focal alterations, they improve the estimation of background rates for each category.

Proper citation: GISTIC (RRID:SCR_000151) Copy   

•   Source: SciCrunch Registry
  

http://english.pusan.ac.kr

A national public university in Busan, South Korea which offers degree programs in a wide variety of disciplines such as nursing, education, nano technologies and the creative arts at both the undergraduate and graduate level.

Proper citation: Pusan National University; Busan; South Korea (RRID:SCR_000277) Copy   

•   Source: SciCrunch Registry
  

http://homedialyzorsunited.org/

A non-profit patient organization dedicated to educate, support and advocate for home dialysis. Their main focus is advocating and supporting those on home hemodialysis and peritoneal dialysis modalities. Membership is free and inclusive of dialyzors, care partners, nurses, nephrologists, renal professionals and others.

Proper citation: Home Dialyzors United (RRID:SCR_000275) Copy   

•   Source: SciCrunch Registry
  

http://co.mbine.org/specifications/sed-ml

An XML-based format for encoding simulation experiments. SED-ML allows to define the models to use, the experimental tasks to run and which results to produce.

Proper citation: Simulation Experiment Description Markup Language (RRID:SCR_000268) Copy   

•   Source: SciCrunch Registry
  

http://www.cs.utexas.edu/~bajaj/cvc/software/f2dockclient.shtml

A collection of user interfaces packaged into TexMol that allows a user to interactively submit protein-protein docking jobs to a remote computing cluster, monitor the status of the jobs and retrieve and visually display/compare the results.

Proper citation: F2DockClient (RRID:SCR_000185) Copy   

•   Source: SciCrunch Registry
  

http://www.biosolveit.de/flexx/index.html?ct=1

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A software with two main applications: predicting the binding mode of three-dimensional proteins and virtual high-throughput screening (vHTS) which allows screening of compounds at rapid speeds.

Proper citation: FlexX (RRID:SCR_000186) Copy   

•   Source: SciCrunch Registry
  

http://pipmaker.bx.psu.edu

A portal for the Miller Lab at Penn State that does research in comparative genomics and bioinformatics. The website has resources such as web-based applications for genetic databases, software for genomic analysis and publications from the lab.

Proper citation: Miller Lab at the Penn State Center for Comparative Genomics and Bioinformatics (RRID:SCR_000222) Copy   

•   Source: SciCrunch Registry
  

http://www.ausbiotech.org/

A portal to Australia's biotechnology industry organization and national network that represents members from sectors including but not limited to human health, agriculture and the environment. The organization provides representation and support to their member companies.

Proper citation: AusBiotech: Australia's Biotechnology Organization (RRID:SCR_000223) Copy   

•   Source: SciCrunch Registry
  

http://www.crash.lshtm.ac.uk/TP_English_StudyDesgn.htm

Portal for placebo controlled trial of the effects of 48-hour infusion of corticosteroids on death and on neurological disability, among adults with head injury and some impairment of consciousness. The outcomes will be measured by rates of death and neurological disability. Patients are recruited (or entered by their doctors when informed consent is not obtainable due to impaired cognitive functioning) on a case-by-case basis as head injured patients come through emergency departments. Randomization is done via a 24-hour telephone line that will denote which pack of medication (either the corticosteroids or saline solution as control) to give.

Proper citation: CRASH (RRID:SCR_000221) Copy   

•   Source: SciCrunch Registry
  

http://environmentontology.org/

Community ontology for the concise, controlled description of environmental features and habitats. It provides a structured vocabulary that is designed to support the annotation of any organism or biological sample with environment descriptors. EnvO contains terms for biomes, environmental features, and environmental material.

Proper citation: EnvO (RRID:SCR_000182) Copy   

•   Source: SciCrunch Registry
  

http://www.fullmoonbio.com/

An antibody supplier based out of the Silicon Valley which has a focus on products used for proteomic research. The company supplies products such as ELISA based antibody arrays, DNA and protein microarray substrates and imaging system calibration and validation tools.

Proper citation: Full Moon BioSystems (RRID:SCR_000215) Copy   

•   Source: SciCrunch Registry
  

http://www.cs.toronto.edu/~hilal/rnacontext/

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Motif finding software suited for using large-scale RNA-binding affinity datasets to determine the relative binding preferences of RNA-binding proteins (RBPs) for a wide range of RNA sequences and structures. The tool is also implemented in a website.

Proper citation: RNAcontext (RRID:SCR_000179) Copy   

•   Source: SciCrunch Registry
  

http://www.nitrc.org/projects/cmfreg/

A sequence of fully automated voxel-wise rigid registration that utilizes stable structures of reference for assessment of craniofacial changes overtime.The major strengths of this method are that registration does not depend on the precision of the 3D surface models and that a stable structure of reference can be used without the simple best fit of all surfaces.

Proper citation: CMFreg (RRID:SCR_000171) Copy   

•   Source: SciCrunch Registry
  

http://www.msstate.edu/

Public university in Mississippi with land, sea and space grants that offers degree programs in areas such as agriculture and applied sciences at the undergraduate and graduate levels.

Proper citation: Mississippi State University; Mississippi; USA (RRID:SCR_000361) Copy   

•   Source: SciCrunch Registry
  

http://eagle-i.ea.vanderbilt.edu/i/00000139-a245-7d53-b4bd-8a1180000000

A lab facility at Vanderbilt University Medical Center that provides histological sample preparation.

Proper citation: Vanderbilt Bradykinin Core Laboratory (RRID:SCR_000365) Copy   

•   Source: SciCrunch Registry
  

http://purl.bioontology.org/ontology/CTONT

Ontology of clinical trial terminology.

Proper citation: Epoch Clinical Trial Ontology (RRID:SCR_000366) Copy   

•   Source: SciCrunch Registry
  

http://international.uni.wroc.pl/en/s3.php

A public research university in Poland. The school offers degree programs in business, humanities, chemistry, global studies and more at the undergraduate, graduate and doctoral level.

Proper citation: University of Wroclaw; Wroclaw; Poland (RRID:SCR_000363) Copy   

•   Source: SciCrunch Registry
  

http://www.bioconductor.org/packages/release/bioc/html/TransView.html

Software package to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Proper citation: TransView (RRID:SCR_000358) Copy   

•   Source: SciCrunch Registry
  

http://www.bioconductor.org/packages/release/bioc/html/pvac.html

Software package that contains the function for filtering genes by the proportion of variation accounted for by the first principal component (PVAC).

Proper citation: pvac (RRID:SCR_000359) Copy   

•   Source: SciCrunch Registry
  

https://code.google.com/p/taps/

A bioinformatic tool for the identification of allele-specific copy numbers in tumor samples using data from Affymetrix SNP arrays.

Proper citation: TAPS (RRID:SCR_000356) Copy   

•   Source: SciCrunch Registry