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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Mosquito Gross Anatomy Ontology Resource Report Resource Website |
Mosquito Gross Anatomy Ontology (RRID:SCR_003839) | TGMA | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary of the anatomy of mosquitoes. | obo | is listed by: BioPortal | nlx_157485 | SCR_003839 | 2026-09-03 04:58:51 | 0 | |||||||||
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CPTAC Proteomics Pipeline Infrastructure Ontology Resource Report Resource Website |
CPTAC Proteomics Pipeline Infrastructure Ontology (RRID:SCR_006945) | CPTAC | controlled vocabulary, data or information resource, ontology | A basic ontology which describes the proteomics pipeline infrastructure for CPTAC project | owl | is listed by: BioPortal | nlx_157349 | SCR_006945 | 2026-09-03 04:59:11 | 0 | |||||||||
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Neurobehavior Ontology Resource Report Resource Website 1+ mentions |
Neurobehavior Ontology (RRID:SCR_006201) | NBO | controlled vocabulary, data or information resource, ontology | An ontology consisting of two main components, an ontology of behavioral processes and an ontology of behavioral phenotypes. The behavioral process branch of NBO contains a classification of behavior processes complementing and extending the GO process ontology. The behavior phenotype branch of NBO consists of a classification of both normal and abnormal behavioral characteristics of organisms. The prime application of NBO is to provide the vocabulary that is required to integrate behavior observations within and across species. It is currently being applied by several model organism communities as well as in the description of human behavior-related disease phenotypes. The main ontology is available in both the OBO Flatfile Format and the Web Ontology Language (OWL). | obo, neurobehavior, behavior, phenotype, behavioral process, biology, animal, normal, abnormal, owl, genetics |
is listed by: BioPortal is listed by: OBO is listed by: Google Code is related to: Gene Ontology |
New BSD License, (Code) | nlx_151745 | http://purl.bioontology.org/ontology/NBO, http://behavior-ontology.googlecode.com/svn/trunk/behavior.owl, http://bioportal.bioontology.org/ontologies/1621 | SCR_006201 | Neurobehavior Ontology (NBO), Neuro Behavior Ontology, behavior-ontology, Behavioral Ontology | 2026-09-03 04:57:46 | 2 | ||||||
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Human Developmental Anatomy Ontology timed version Resource Report Resource Website |
Human Developmental Anatomy Ontology timed version (RRID:SCR_010338) | EHDA | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The timed version of the human developmental anatomy ontology gives all the tissues present at each Carnegie Stage (CS) of human development (1-20) linked by a part-of rule. Each term is mentioned only once so that the embryo at each stage can be seen as the simple sum of its parts. Users should note that tissues that are symmetric (e.g. eyes, ears, limbs) are only mentioned once. | obo | is listed by: BioPortal | nlx_157431 | SCR_010338 | 2026-09-03 04:58:09 | 0 | |||||||||
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Human Physiology Simulation Ontology Resource Report Resource Website |
Human Physiology Simulation Ontology (RRID:SCR_010340) | HUPSON | controlled vocabulary, data or information resource, ontology | Ontology as a basis for shared semantics and interoperability of simulations, of models, of algorithms and of other resources in this domain. The ontology is based on the Basic Formal Ontology, and adheres to the MIREOT principles. | owl | is listed by: BioPortal | nlx_157434 | SCR_010340 | 2026-09-03 04:58:14 | 0 | |||||||||
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Logical Observation Identifier Names and Codes Resource Report Resource Website 1+ mentions |
Logical Observation Identifier Names and Codes (RRID:SCR_010341) | LOINC | controlled vocabulary, data or information resource, ontology | Ontology of logical observation identifier names and codes (LOINC); Version 2.26; January 2, 2009 | umls | is listed by: BioPortal | nlx_157460 | SCR_010341 | 2026-09-03 04:57:56 | 1 | |||||||||
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DICOM Controlled Terminology Resource Report Resource Website |
DICOM Controlled Terminology (RRID:SCR_010302) | DCM | controlled vocabulary, data or information resource, ontology | DICOM Controlled Terminology (PS3.16 2013 Annex D) | owl | is listed by: BioPortal | nlx_157381 | SCR_010302 | 2026-09-03 04:58:12 | 0 | |||||||||
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Diagnostic Ontology Resource Report Resource Website |
Diagnostic Ontology (RRID:SCR_010307) | DIAGONT | controlled vocabulary, data or information resource, ontology | A computational diagnostic ontology containing 91 elements, including classes and sub-classes, which are required to conduct SR-MA (Systematic Review - Meta Analysis) for diagnostic studies, that will assist in standardized reporting of diagnostic articles. They also report high percentage of agreement among five observers as a result of the inter-observer agreement that they conducted among them to tag 13 articles using the diagnostic ontology. Moreover, they extend their existing repository CERR-N (Center of Excellence in Research Reporting in Neurosurgery) to include diagnostic studies. | owl | is listed by: BioPortal | nlx_157386 | SCR_010307 | 2026-09-03 04:57:59 | 0 | |||||||||
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Translational Medicine Ontology Resource Report Resource Website |
Translational Medicine Ontology (RRID:SCR_010439) | TMO | controlled vocabulary, data or information resource, ontology | A high level patient-centric ontology for the pharmaceutical industry. The ontology should enable silos in discovery research, hypothesis management, experimental studies, compounds, formulation, drug development, market size, competitive data, population data, etc. to be brought together. This would enable scientists to answer new questions, and to answer existing scientific questions more quickly. This will help pharmaceutical companies to model patient-centric information, which is essential for the tailoring of drugs, and for early detection of compounds that may have sub-optimal safety profiles. The ontology should link to existing publicly available domain ontologies. | owl | is listed by: BioPortal | nlx_157616 | SCR_010439 | 2026-09-03 04:58:15 | 0 | |||||||||
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BioPortal Metadata Ontology Resource Report Resource Website |
BioPortal Metadata Ontology (RRID:SCR_010167) | BP-METADATA | controlled vocabulary, data or information resource, ontology | Ontology that represents the structure that BioPortal uses to represent all of its metadata (ontology details, mappings, notes, reviews, views) | owl |
is listed by: BioPortal is related to: Provisional Cell Ontology |
nlx_157328 | http://www.bioontology.org/wiki/index.php/BioPortal_Metadata | SCR_010167 | 2026-09-03 04:58:09 | 0 | ||||||||
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Minimal Standard Terminology of Digestive Endoscopy Resource Report Resource Website |
Minimal Standard Terminology of Digestive Endoscopy (RRID:SCR_003785) | MSTDE | controlled vocabulary, data or information resource, ontology | Metathesaurus Version of Minimal Standard Terminology Digestive Endoscopy. Bethesda, MD: National Library of Medicine, 2001. | umls | is listed by: BioPortal | nlx_157483 | SCR_003785 | 2026-09-03 04:46:37 | 0 | |||||||||
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Systematized Nomenclature of Medicine - International Version Resource Report Resource Website |
Systematized Nomenclature of Medicine - International Version (RRID:SCR_003849) | SNMI | controlled vocabulary, data or information resource, ontology | Ontology of systematized nomenclature of human and veterinary medicine: SNOMED International. Cote, Roger A., editor. Northfield (IL): College of American Pathologists; Schaumburg (IL): American Veterinary Medical Association, Version 3.5, 1998. | umls | is listed by: BioPortal | nlx_157604 | SCR_003849 | Systematized Nomenclature of Medicine International Version | 2026-09-03 04:46:33 | 0 | ||||||||
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Neural-Immune Gene Ontology Resource Report Resource Website 1+ mentions |
Neural-Immune Gene Ontology (RRID:SCR_004120) | NIGO | controlled vocabulary, data or information resource, ontology | Ontology that is a subset of GO directed for neurological and immunological systems. It was created by clipping those GO terms that are not associated to any gene in human, rat and mouse, and by clipping terms not found to be relevant to the neural and/or immune domains. | obo |
is listed by: BioPortal is related to: Gene Ontology |
nlx_157506 | SCR_004120 | 2026-09-03 04:46:56 | 1 | |||||||||
|
MGED Ontology Resource Report Resource Website 1+ mentions |
MGED Ontology (RRID:SCR_004484) | MO | controlled vocabulary, data or information resource, ontology | An ontology including concepts, definitions, terms, and resources for a standardized description of a microarray experiment in support of MAGE v.1. The MGED ontology is divided into the MGED Core ontology which is intended to be stable and in synch with MAGE v.1; and the MGED Extended ontology which adds further associations and classes not found in MAGE v.1. These terms will enable structure queries of elements of the experiments. Furthermore, the terms will also enable unambiguous descriptions of how the experiment was performed. | microarray, biomaterial, treatment, mage, owl |
is listed by: BioPortal is related to: MIAME is related to: MIAME is related to: RNA Abundance Database has parent organization: Functional Genomics Data Society has parent organization: SourceForge |
NIBIB ; NHGRI P41HG003619 |
PMID:16428806 | nlx_47223 | http://purl.bioontology.org/ontology/MO | SCR_004484 | Microarray and Gene Expression Data Ontology | 2026-09-03 04:47:09 | 1 | |||||
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PhenX Phenotypic Terms Resource Report Resource Website |
PhenX Phenotypic Terms (RRID:SCR_004518) | PHENX | controlled vocabulary, data or information resource, ontology | Ontology for standard measures related to complex diseases, phenotypic traits and environmental exposures | owl |
is listed by: BioPortal has parent organization: Consensus Measures for Phenotype and Exposure is organization facet of: Phenotypes and eXposures Toolkit |
nlx_157548 | SCR_004518 | 2026-09-03 04:47:18 | 0 | |||||||||
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Ontology of Pneumology Resource Report Resource Website |
Ontology of Pneumology (RRID:SCR_004378) | ONTOPNEUMO | controlled vocabulary, data or information resource, ontology | Ontology of pneumology (french version) developped by Audrey Baneyx, under the direction of Jean Charlet about knowledge engineering expertise and by Francois-Xavier Blanc in collaboration with Bruno Housset about medical expertise. | owl | is listed by: BioPortal | Creative Commons Attribution-NonCommercial-NoDerivs License, v2 UK | nlx_157537 | SCR_004378 | 2026-09-03 04:47:12 | 0 | ||||||||
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Pharmacovigilance Ontology Resource Report Resource Website |
Pharmacovigilance Ontology (RRID:SCR_004499) | PVONTO | controlled vocabulary, data or information resource, ontology | A pharmacovigilance ontology to connect known facts on drugs, disease, ADEs, and their molecular mechanisms. | owl | is listed by: BioPortal | nlx_157547 | SCR_004499 | 2026-09-03 04:47:19 | 0 | |||||||||
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SO Resource Report Resource Website 10+ mentions |
SO (RRID:SCR_004374) | SO | controlled vocabulary, data or information resource, ontology | A collaborative ontology for the definition of sequence features used in biological sequence annotation. SO was initially developed by the Gene Ontology Consortium. Contributors to SO include the GMOD community, model organism database groups such as WormBase, FlyBase, Mouse Genome Informatics group, and institutes such as the Sanger Institute and the EBI. Input to SO is welcomed from the sequence annotation community. The OBO revision is available here: http://sourceforge.net/p/song/svn/HEAD/tree/ SO includes different kinds of features which can be located on the sequence. Biological features are those which are defined by their disposition to be involved in a biological process. Biomaterial features are those which are intended for use in an experiment such as aptamer and PCR_product. There are also experimental features which are the result of an experiment. SO also provides a rich set of attributes to describe these features such as polycistronic and maternally imprinted. The Sequence Ontologies use the OBO flat file format specification version 1.2, developed by the Gene Ontology Consortium. The ontology is also available in OWL from Open Biomedical Ontologies. This is updated nightly and may be slightly out of sync with the current obo file. An OWL version of the ontology is also available. The resolvable URI for the current version of SO is http://purl.obolibrary.org/obo/so.owl. | annotation, sequence, biological sequence, sequence variation, genome, genome annotation, owl, FASEB list |
is listed by: BioPortal is related to: ASOoViR is related to: VAGrENT has parent organization: OBO has parent organization: Gene Ontology |
NHGRI HG02273 | PMID:20796305 PMID:20226267 PMID:18629179 PMID:15892872 |
The community can contribute to this resource | nlx_38918 | SCR_004374 | Sequence Ontology Project, Sequence Types and Features Ontology, Sequence Ontology | 2026-09-03 04:47:12 | 46 | |||||
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Open Biological and Biomedical Ontologies Relationship Types Resource Report Resource Website 50+ mentions |
Open Biological and Biomedical Ontologies Relationship Types (RRID:SCR_004409) | OBOREL | controlled vocabulary, data or information resource, ontology | THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 23, 2014. Ontology that defines core relations used in all OBO ontologies. Obsolete. Replaced with RO. | obo | is listed by: BioPortal | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157539 | SCR_004409 | 2026-09-03 04:47:13 | 62 | ||||||||
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Cognitive Paradigm Ontology Resource Report Resource Website 1+ mentions |
Cognitive Paradigm Ontology (RRID:SCR_002235) | CogPO | controlled vocabulary, data or information resource, ontology | Ontology used to describe the experimental conditions within cognitive and behavioral experiments, primarily in humans for application and use in the functional neuroimaging community. CogPO has been developed through the integration of the Functional Imaging Biomedical Informatics Research Network (FBIRN) Human Imaging Database (HID) and the BrainMap Database. The design of CogPO concentrates on what can be observed directly: categorization of each paradigm in terms of (1) the stimulus presented to the subjects, (2) the requested instructions, and (3) the returned response. | functional neuroimaging, owl, cognition, behavior |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: BioPortal is related to: Human Imaging Database has parent organization: University of Texas Health Science Center at San Antonio; Texas; USA has parent organization: Mind Research Network |
NIMH 1R01MH084812-01A1 | Free, Freely available | nlx_155537 | http://www.nitrc.org/projects/cogpo | SCR_002235 | 2026-09-03 04:45:17 | 9 |
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