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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ASTER Resource Report Resource Website 100+ mentions |
ASTER (RRID:SCR_010478) | ASTER | data or information resource, database | An imaging instrument onboard Terra, the flagship satellite of NASA''s Earth Observing System (EOS) that collects and archives data to create detailed maps of land surface temperature, reflectance, and elevation. The ASTER project is a collaboration between NASA and the Japanese government to develop a scientific understanding of the Earth. | climatology, cartography, earth sciences, map, topographical surveying, geospatial data, land surface temperature, reflectance, elevation, FASEB list | is listed by: re3data.org | nlx_157751, r3d100011708 | SCR_010478 | ASTER - Advanced Spaceborne Thermal Emission and Reflection Radiometer, Advanced Spaceborne Thermal Emission and Reflection Radiometer, Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) | 2026-08-29 11:30:32 | 211 | ||||||||
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The NINDS Human Cell and Data Repository (NHCDR) Resource Report Resource Website 10+ mentions |
The NINDS Human Cell and Data Repository (NHCDR) (RRID:SCR_016319) | NHCDR | biomaterial supply resource, material resource, tissue bank | Cell sources currently include fibroblasts and/or induced pluripotent stem cells for Alzheimer's Disease, Amyotrophic Lateral Sclerosis (ALS), Ataxia-telangiectasia, Frontotemporal Lobar Degeneration (FTD), Huntington's Disease, Parkinson's Disease, and healthy controls. Cell sources, including isogenic cell lines for current and new diseases covered by the NINDS will be added over the next several years. | Stem, cell, fibroblast, plutipotent, isogenic |
is used by: NIH Heal Project is recommended by: National Library of Medicine is listed by: re3data.org works with: Cellosaurus |
Alzheimer's Disease, Amyotrophic Lateral Sclerosis (ALS), Ataxia-telangiectasia, Frontotemporal Lobar Degeneration (FTD), Huntington's Disease, Parkinson's Disease | NINDS ; NLM |
Restricted | https://nindsgenetics.org/ | SCR_016319 | NINDS Human Cell and Data Repository (NHCDR) | 2026-08-29 11:30:22 | 21 | |||||
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Microphysiology Systems Database Resource Report Resource Website 1+ mentions |
Microphysiology Systems Database (RRID:SCR_021126) | MPS-Db | data or information resource, database | Open source database used for analyzing and modeling compound interactions with human and animal organ models.Platform for experimental design, data management, and analysis, and to combine experimental data with reference data, to enable computational modeling. Resource for relating in vitro organ model data to multiple biochemical, preclinical, and clinical data sources on in vivo drug effects. | Compound interactions, human organ models, animal organ models, analyzing interactions, modeling interactions, |
is used by: NIH Heal Project is listed by: re3data.org |
NCATS UH3 TR00503; NIH Office of the Director S10 OD01226; U.S. Environmental Protection Agency |
PMID:28781990 | Free, Freely available | SCR_021126 | MPS database | 2026-08-29 11:30:47 | 4 | ||||||
|
Code Ocean Resource Report Resource Website 50+ mentions |
Code Ocean (RRID:SCR_015532) | software resource | Cloud-based executable research platform for discovering and running scientific code. Code Ocean is designed to give researchers and developers a way to share, discover and run code published in academic journals and conferences. Users can upload code and data in various programming languages and link working code in a computational environment with the associated article, with Code Ocean assigning a Digital Object Identifier (DOI) to the algorithm. | cloud based platform, cloud platform, source code repository, scientific code repository |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing |
Open source, Code is available for download | DOI:10.17616/R38F5N, DOI:10.24433, DOI:10.25504/FAIRsharing.thskvr | https://doi.org/10.17616/R38F5N, https://doi.org/10.24433/, https://dx.doi.org/10.24433/, https://fairsharing.org/10.25504/FAIRsharing.thskvr | SCR_015532 | Code Ocean Inc | 2026-08-29 11:24:58 | 56 | |||||||
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Tuberculosis Database Resource Report Resource Website 50+ mentions |
Tuberculosis Database (RRID:SCR_006619) | TBDB | data or information resource, database | Database providing integrated access to genome sequence, expression data and literature curation for Tuberculosis (TB) that houses genome assemblies for numerous strains of Mycobacterium tuberculosis (MTB) as well assemblies for over 20 strains related to MTB and useful for comparative analysis. TBDB stores pre- and post-publication gene-expression data from M. tuberculosis and its close relatives, including over 3000 MTB microarrays, 95 RT-PCR datasets, 2700 microarrays for human and mouse TB related experiments, and 260 arrays for Streptomyces coelicolor. (July 2010) To enable wide use of these data, TBDB provides a suite of tools for searching, browsing, analyzing, and downloading the data. | genomic, protein, blast, genome, gene, systems biology, gene expression, microarray, comparative analysis, regulatory network, metabolic network, epitope, expression profile, rt-pcr, gene regulation, genome browser, FASEB list |
is listed by: re3data.org is related to: SMD is related to: BioCyc has parent organization: Broad Institute has parent organization: Stanford University School of Medicine; California; USA |
Tuberculosis | Bill and Melinda Gates Foundation | PMID:20488753 PMID:18835847 |
Acknowledgement requested, Public, (Published data) | nif-0000-03537, r3d100010930 | https://doi.org/10.17616/R39G8F | SCR_006619 | TB Database, TBDatabase | 2026-08-29 11:29:48 | 64 | |||
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HIstome: The Histone Infobase Resource Report Resource Website 1+ mentions |
HIstome: The Histone Infobase (RRID:SCR_006972) | HIstome | data or information resource, database | Database of human histone variants, sites of their post-translational modifications and various histone modifying enzymes. The database covers 5 types of histones, 8 types of their post-translational modifications and 13 classes of modifying enzymes. Many data fields are hyperlinked to other databases (e.g. UnprotKB/Swiss-Prot, HGNC, OMIM, Unigene etc.). Additionally, this database also provides sequences of promoter regions (-700 TSS +300) for all gene entries. These sequences were extracted from the UCSC genome browser. Sites of post-translational modifications of histones were manually searched from PubMed listed literature. Current version contains information for about ~50 histone proteins and ~150 histone modifying enzymes. HIstome is a combined effort of researchers from two institutions, Advanced Center for Treatment, Research and Education in Cancer (ACTREC), Navi Mumbai and Center of Excellence in Epigenetics (CoEE), Indian Institute of Science Education and Research (IISER), Pune. | histone, protein, enzyme, modifying enzyme, post-translational modification, variant, promoter region, gene, epigenetic regulation, india, bio.tools |
is listed by: re3data.org is listed by: Debian is listed by: bio.tools has parent organization: ACTREC - Advanced Centre for Treatment Research and Education in Cancer |
Cancer | ACTREuropean Union - Advanced Centre for Treatment Research and Education in Cancer ; Government of India |
PMID:22140112 | Free, Public, Acknowledgement requested | biotools:histome, r3d100010977, nlx_151419 | http://www.actrec.gov.in/histome/, https://bio.tools/histome, https://doi.org/10.17616/R3RD0R | http://www.histome.net/ | SCR_006972 | 2026-08-29 11:29:46 | 1 | |||
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HPRD - Human Protein Reference Database Resource Report Resource Website 1000+ mentions |
HPRD - Human Protein Reference Database (RRID:SCR_007027) | HPRD | data or information resource, database | Database that represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome. All the information in HPRD has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data. | protein, disease, network, post-translational, proteome, protein binding, protein s, protein c, pathway, protein-protein interaction, protein expression, subcellular localization, phosphorylation motif, signaling pathway, protein sequence, blast, molecule, domain, motif, post-translational modification, protein isoform, FASEB list |
is used by: Mutation Annotation and Genomic Interpretation is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition is used by: GEMINI is listed by: re3data.org is related to: Human Proteinpedia is related to: MatrixDB is related to: Interaction Reference Index is related to: Pathway Commons is related to: ConsensusPathDB is related to: Gene Ontology is related to: Agile Protein Interactomes DataServer has parent organization: Johns Hopkins University; Maryland; USA has parent organization: Institute of Bioinformatics; Bangalore; India |
PMID:18988627 PMID:16381900 PMID:14525934 |
Acknowledgement requested, Free, Non-commercial, Commercial requires license | nif-0000-00137, r3d100010978 | https://doi.org/10.17616/R3MK9N | SCR_007027 | Human Protein Reference Database | 2026-08-29 11:29:55 | 1311 | |||||
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FAOSTAT Resource Report Resource Website 500+ mentions |
FAOSTAT (RRID:SCR_006914) | FAOSTAT | data or information resource, database | A multilingual database that provides large time-series and cross sectional data relating to hunger, food, agriculture, nutrition, fisheries, forestry and food aid by country and region from 1961 to present. Data can be searched, browsed, analyzed and downloaded. | agriculture, agricultural productivity, food supply, economic, forest, hunger, malnutrition, web service, food, trade, price, emission, investment, environment, FASEB list | is listed by: re3data.org | Free | r3d100010847, nif-0000-30554 | http://faostat.fao.org/site/368/DesktopDefault.aspx?PageID=368#ancor, http://faostat3.fao.org/faostat-gateway/go/to/home/E, https://doi.org/10.17616/R3N614 | SCR_006914 | 2026-08-29 11:29:54 | 973 | |||||||
|
UniGene Resource Report Resource Website 1000+ mentions |
UniGene (RRID:SCR_004405) | UniGene | data or information resource, database, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Web tool for an organized view of the transcriptome. Collection of the computationally identified transcripts from the same locus. Information on protein similarities, gene expression, cDNA clones, and genomic location. System for automatically partitioning GenBank sequences into a non redundant set of gene oriented clusters. | colleciton, data, information, organized, view, transcriptome, locus, protein, similarity, gene, expression, |
is used by: Rank Rank Hypergeometric Overlap is listed by: OMICtools is listed by: re3data.org is related to: ProbeMatchDB 2.0 is related to: Bgee: dataBase for Gene Expression Evolution is related to: GeneSpeed- A Database of Unigene Domain Organization has parent organization: NCBI works with: Digital Differential Display (DDD) |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_41571, OMICS_01663, r3d100010774 | http://www.ncbi.nlm.nih.gov/sites/entrez?db=unigene, https://doi.org/10.17616/R35G7T | SCR_004405 | NCBI UniGene, Organized View of the Transcriptome, UniGene | 2026-08-29 11:29:25 | 1153 | ||||||
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NCBI Nucleotide Resource Report Resource Website 100+ mentions |
NCBI Nucleotide (RRID:SCR_004860) | NCBI Nucleotide, NCBI gi | data or information resource, database | Database of nucleotide sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery. | gene expression, genomics, nucleic acid, biological assay, nucleotide, gold standard |
is listed by: re3data.org is related to: GenBank is related to: BioExtract is related to: DIG IT - Database of Immunoglobulins and Integrated Tools is related to: RefSeq is related to: TPA is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: NCBI |
nlx_84100, r3d100010778 | http://www.ncbi.nlm.nih.gov/sites/entrez?db=nuccore, http://www.ncbi.nlm.nih.gov/nuccore, https://doi.org/10.17616/R3NG8J | SCR_004860 | Nucleotide Database, Entrez Nucleotide, CoreNucleotide, Nucleotide | 2026-08-29 11:29:29 | 378 | |||||||
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NCBI BioProject Resource Report Resource Website 10000+ mentions |
NCBI BioProject (RRID:SCR_004801) | data or information resource, database | Database of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project. It is a searchable collection of complete and incomplete (in-progress) large-scale sequencing, assembly, annotation, and mapping projects for cellular organisms. Submissions are supported by a web-based Submission Portal. The database facilitates organization and classification of project data submitted to NCBI, EBI and DDBJ databases that captures descriptive information about research projects that result in high volume submissions to archival databases, ties together related data across multiple archives and serves as a central portal by which to inform users of data availability. BioProject records link to corresponding data stored in archival repositories. The BioProject resource is a redesigned, expanded, replacement of the NCBI Genome Project resource. The redesign adds tracking of several data elements including more precise information about a project''''s scope, material, and objectives. Genome Project identifiers are retained in the BioProject as the ID value for a record, and an Accession number has been added. Database content is exchanged with other members of the International Nucleotide Sequence Database Collaboration (INSDC). BioProject is accessible via FTP. | genome sequencing, sequencing, genotype, phenotype, sequence variant, epigenetic, data set, genome, assembly, annotation, mapping, cellular organism, gene mapping, gene expression, biological tag, gene rearrangement, genetic algorithm, genetic code, genetic genealogy, gold standard, bio.tools |
is listed by: 3DVC is listed by: re3data.org is listed by: Debian is listed by: bio.tools is related to: INSDC has parent organization: NCBI |
NLM | PMID:22139929 | Free, Freely available | r3d100013330, nlx_143909, biotools:bioproject | http://www.ncbi.nlm.nih.gov/genomeprj, https://bio.tools/bioproject, https://doi.org/10.17616/R31NJMS2 | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=genomeprj | SCR_004801 | NCBI BioProject Database, BioProject | 2026-08-29 11:29:36 | 14025 | ||||
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UK Data Archive Resource Report Resource Website 50+ mentions |
UK Data Archive (RRID:SCR_014708) | data or information resource, organization portal, portal | Organization which acquires, curates, and provides access to a collection of digital data in the social sciences and humanities in the United Kingdom. | data archive, digital data, social science, humanities, curator |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing |
ESRC ; JISC ; University of Essex |
grid.438826.3, DOI:10.25504/FAIRsharing.qtm44s, Wikidata: Q17039301, ISNI: 0000 0001 0377 8000, DOI:10.5255, DOI:10.17616/R3088K | https://ror.org/03fknw408, https://doi.org/10.17616/R3088K, https://doi.org/10.17616/r3088k, https://doi.org/10.5255/, https://dx.doi.org/10.5255/, https://fairsharing.org/10.25504/FAIRsharing.qtm44s | SCR_014708 | 2026-08-29 11:28:55 | 95 | ||||||||
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Launchpad Resource Report Resource Website 10+ mentions |
Launchpad (RRID:SCR_006853) | Launchpad | software application, software development tool, software repository, software resource | A software collaboration platform that provides: Bug tracking, Code hosting using Bazaar, Code reviews, Ubuntu package building and hosting, Translations, Mailing lists, Answer tracking and FAQs, and Specification tracking. Launchpad can host your project''s source code using the Bazaar version control system. | sharing, software, tracking, translation, computer science, web service, source code | is listed by: re3data.org | GNU Affero General Public License, v3 | nif-0000-10278 | SCR_006853 | 2026-08-29 11:31:02 | 27 | ||||||||
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Brown Digital Repository Resource Report Resource Website |
Brown Digital Repository (RRID:SCR_023144) | data repository, service resource, storage service resource | Collection contains open and publicly funded data sets created by Brown University faculty and student researchers. Increasingly, publishers, and funders are requiring that protocols, data sets, metadata, and code underlying published research be retained and preserved, their locations cited within publications, and shared with other researchers and the public. The deposits here endeavor to be in line with FAIR Principles (Findable, Accessible, Interoperable, Reusable). If you would like to deposit data set into this collection for the purposes of citation/linking within publication and public dissemination, then please log in, zip up and upload your file, and request digital object identifier (DOI) for your data citation. |
is listed by: DataCite is listed by: re3data.org |
Free, Freely available | DOI:10.17616/R3193B, r3d100011654, DOI:10.7301 | https://doi.org/10.7301, https://dx.doi.org/10.7301, http://doi.org/10.17616/R3193B, https://doi.org/10.17616/R3193B | SCR_023144 | Brown Digital Repository | 2026-08-29 11:28:16 | 0 | ||||||||
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BioHeritage National Science Challenge Data Repository Resource Report Resource Website |
BioHeritage National Science Challenge Data Repository (RRID:SCR_023141) | data repository, service resource, storage service resource | Data catalogue and repository for New Zealand's Biological Heritage National Science Challenge. |
is listed by: DataCite is listed by: re3data.org |
Free, Freely available | DOI:10.17616/R31NJN01, DOI:10.34721, r3d100013617 | https://doi.org/10.34721, https://dx.doi.org/10.34721, http://doi.org/10.17616/R31NJN01, https://doi.org/10.17616/R31NJN01 | SCR_023141 | BioHeritage National Science Challenge Data Repository | 2026-08-29 11:27:54 | 0 | ||||||||
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INPTDAT Resource Report Resource Website |
INPTDAT (RRID:SCR_022167) | data or information resource, data repository, service resource, storage service resource | Interdisciplinary data platform provides access to research data and information from all fields of applied plasma physics and plasma medicine. Aims at distributing, publishing and archiving of data and information, supporting findability, accessibility, interoperability and re-use of data, for low temperature plasma physics community.Most of data are freely available and can be used under terms of license listed on dataset description page. Each dataset can be identified, cited and shared by using Digital Object Identifier. | Leibniz Institute for Plasma Science and Technology, FAIR data, applied plasma physics, plasma medicine, low temperature plasma physics community |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing |
Federal Ministry of Education and Research BMBF | Free, Freely available | r3d100013120, DOI:10.34711, DOI:10.17616/R31NJMM8, DOI:10.25504/FAIRsharing.2VADoR | https://doi.org/10.17616/R31NJMM8, https://doi.org/10.17616/r31njmm8, , https://doi.org/10.34711/, https://dx.doi.org/10.34711/, https://fairsharing.org/10.25504/FAIRsharing.2VADoR, https://doi.org/10.17616/R31NJMM8 | SCR_022167 | 2026-08-29 11:27:23 | 0 | |||||||
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BeetleBase Resource Report Resource Website 50+ mentions |
BeetleBase (RRID:SCR_001955) | BEETLEBASE | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | A centralized sequence database and community resource for Tribolium genetics, genomics and developmental biology containing genomic sequence scaffolds mapped to 10 linkage groups, genetic linkage maps, the official gene set, Reference Sequences from NCBI (RefSeq), predicted gene models, ESTs and whole-genome tiling array data representing several developmental stages. The current version of Beetlebase is built on the Tribolium castaneum 3.0 Assembly (Tcas 3.0) released by the Human Genome Sequencing Center at the Baylor College of Medicine. The database is constructed using the upgraded Generic Model Organism Database (GMOD) modules. The genomic data is stored in a PostgreSQL relational database using the Chado schema and visualized as tracks in GBrowse. The genetic map is visualized using the comparative genetic map viewer CMAP. To enhance search capabilities, the BLAST search tool has been integrated with the GMOD tools. Tribolium castaneum is a very sophisticated genetic model organism among higher eukaryotes. As the member of a primitive order of holometabolous insects, Coleoptera, Tribolium is in a key phylogenetic position to understand the genetic innovations that accompanied the evolution of higher forms with more complex development. Coleoptera is also the largest and most species diverse of all eukaryotic orders and Tribolium offers the only genetic model for the profusion of medically and economically important species therein. The genome sequences may be downloaded. | red flour beetle, tribolium castaneum, sequence data, gene, mutant, genetic marker, expressed sequence tag, genome, blast, model organism, insect, developmental biology, genomics, genetics, entomology, development, bio.tools, FASEB list |
is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: RefSeq has parent organization: Kansas State University; Kansas; USA |
NCRR P20 RR16475 | PMID:18362917 PMID:17090595 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02599, biotools:beetlebase, r3d100010921 | https://bio.tools/beetlebase, https://doi.org/10.17616/R3G61K | http://bioinformatics.k-state.edu/BeetleBase/, http://www.bioinformatics.ksu.edu/BeetleBase/ | SCR_001955 | 2026-08-29 11:27:31 | 82 | ||||
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DataONE Resource Report Resource Website 10+ mentions |
DataONE (RRID:SCR_003999) | DataONE | catalog, data or information resource, data repository, database, portal, service resource, software resource, storage service resource | A distributed framework and cyberinfrastructure for open, persistent, and secure access to Earth observational data. It ensures the preservation, access, use and reuse of multi-scale, multi-discipline, and multi-national science data via three primary cyberinfrastucture elements and a broad education and outreach program. The DataONE Investigator Toolkit is a collection of software tools for finding, using, and contributing data in DataONE. DataONE currently hosts three Coordinating Nodes that provide network-wide services to enhance interoperability of the Member Nodes and support indexing and replication services. Coordinating Nodes provide a replicated catalog of Member Node holdings and make it easy for scientists to discover data wherever they reside, also enabling data repositories to make their data and services more broadly available to the international community. DataONE Coordinating Nodes are located at the University of New Mexico, the University of California Santa Barbara and at the University of Tennessee (in collaboration with Oak Ridge National Laboratory). DataONE comprises a distributed network of data centers, science networks or organizations. These organizations can expose their data within the DataONE network through the implementation of the DataONE Member Node service interface. In addition to scientific data, Member Nodes can provide computing resources, or services such as data replication, to the DataONE community. | earth, environment, data sharing, cyberinfrastructure, earth observational data, data management, data set, FASEB list |
uses: DataUp is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing has parent organization: University of New Mexico; New Mexico; USA |
NSF 0830944; NSF 1430508 |
Acknowledgement requested | DOI:10.25504/FAIRsharing.yyf78h, nlx_158410, DOI:10.17616/R3101G, r3d100010478, DOI:10.2586 | https://doi.org/10.17616/R3101G, https://doi.org/10.17616/r3101g, https://doi.org/10.2586/, https://dx.doi.org/10.2586/, https://fairsharing.org/10.25504/FAIRsharing.yyf78h, https://doi.org/10.17616/R3TG83 | SCR_003999 | Data Observation Network for Earth | 2026-08-29 11:27:33 | 45 | |||||
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BOLD Resource Report Resource Website 100+ mentions |
BOLD (RRID:SCR_004278) | BOLD | analysis service resource, data analysis service, data or information resource, data repository, database, production service resource, service resource, storage service resource | DNA barcode data with an online workbench that supports data validation, annotation, and publication for specimen, distributional, and molecular data. The data platform consists of three main modules, a data portal, a database of barcode clusters, and data collection workbench. The Public Data Portal provides access to all public barcode data which consists of data generated using the Workbench module as well as data mined from other sources. The Barcode Index Number (BIN) system assigns a unique identifier to each sequence cluster of COI, providing an interim taxonomic system for species in the animal kingdom. The workbench module integrates secure databases with analytical tools to provide a private collaborative environment for researchers to collect, analyze, and publish barcode data and ancillary DNA sequences. This platform also provides an annotation framework that supports tagging and commenting on records and their components (i.e. taxonomy, images, and sequences), allowing for community-based validation of barcode data. By providing specialized services, it aids in the assembly of records that meet the standards needed to gain BARCODE designation in the global sequence databases. Because of its web-based delivery and flexible data security model, it is also well positioned to support projects that involve broad research alliances. Public data records include record identifiers, taxonomy, specimen details, collection information and sequence data. Data that has been publicly released through BOLD can be retrieved manually through the BOLD public interface or automatically through BOLD web services. BOLD analytical tools are available for any data set that exists in BOLD (including publicly available data). Analytical tools can be accessed through the BOLD Project Console under the headings Sequences Analysis or Specimen Aggregates. Some examples include Taxon ID Tree, Alignment Viewer, Distribution Maps, and Image Library. | protists, taxonomy, dna, barcode, dna barcode, gene sequence, primer, publication, barcode index number, unique identifier, annotation, platform, data management, data sharing, dna sequence, bioinformatics, molecular biology, biology, geography, species, sequence cluster, map, web service, image collection, FASEB list |
is listed by: re3data.org is listed by: DataCite is listed by: FAIRsharing has parent organization: University of Guelph; Ontario; Canada |
Canada Foundation for Innovation ; Genome Canada ; Ontario Innovation Trust ; NSERC ; Gordon and Betty Moore Foundation |
PMID:18784790 | Free, Public | DOI:10.17616/R3PP7J, nlx_29236, DOI:10.25504/FAIRsharing.en9npn, DOI:10.5883, r3d100010129 | http://www.boldsystems.org/, https://doi.org/10.17616/R3PP7J, https://doi.org/10.17616/r3pp7j, https://doi.org/10.5883/, https://dx.doi.org/10.5883/, https://fairsharing.org/10.25504/FAIRsharing.en9npn, https://doi.org/10.17616/R3KG65 | SCR_004278 | BOLD Systems, Barcode of Life Database Systems, Barcode of Life Database, Barcode of Life Data Systems, BOLD : The Barcode of Life Data System | 2026-08-29 11:27:43 | 499 | ||||
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EMAGE Gene Expression Database Resource Report Resource Website 10+ mentions |
EMAGE Gene Expression Database (RRID:SCR_005391) | EMAGE | atlas, data or information resource, data repository, database, service resource, storage service resource | A database of in situ gene expression data in the developing mouse embryo and an accompanying suite of tools to search and analyze the data. mRNA in situ hybridization, protein immunohistochemistry and transgenic reporter data is included. The data held is spatially annotated to a framework of 3D mouse embryo models produced by EMAP (e-Mouse Atlas Project). These spatial annotations allow users to query EMAGE by spatial pattern as well as by gene name, anatomy term or Gene Ontology (GO) term. The conceptual framework which houses the descriptions of the gene expression patterns in EMAGE is the EMAP Mouse Embryo Anatomy Atlas. This consists of a set of 3D virtual embryos at different stages of development, as well as an accompanying ontology of anatomical terms found at each stage. The raw data images can be conventional 2D photographs (of sections or wholemount specimens) or 3D images of wholemount specimens derived from Optical Projection Tomography (OPT) or confocal microscopy. Users may submit data using a Data submission tool or without. | genetics, 3d model, anatomy, development, mouse morphology, molecular neuroanatomy resource, gene expression, in situ hybridization, immunohistochemistry, embryo, in situ reporter, embryonic mouse, optical projection tomography, confocal microscopy, annotation, pathway, gene association, protein, theiler stage, gene expression, embryology, dna, protein, protein-protein interaction, protein binding, gene, embryology, anatomy, genetics, bio.tools |
is listed by: re3data.org is listed by: Debian is listed by: bio.tools is related to: HUDSEN Electronic Atlas of the Developing Human Brain is related to: eMouseAtlas is related to: eMouseAtlas is related to: HUDSEN Human Gene Expression Spatial Database is related to: aGEM is related to: Eurexpress is related to: Gene Expression Database is related to: Gene Ontology is related to: NIDDK Information Network (dkNET) is related to: GUDMAP Ontology |
MRC | PMID:19767607 | Except where noted, Creative Commons Attribution License, The community can contribute to this resource | biotools:emage, nif-0000-00080, r3d100010564 | https://bio.tools/emage, https://doi.org/10.17616/R3860B | SCR_005391 | Emage (e-Mouse Atlas of Gene Expression), e-Mouse Atlas of Gene Expression | 2026-08-29 11:27:34 | 25 |
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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
