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Species: Synthetic
Genetic Insert: CHARMS-3xA
Vector Backbone Description: Vector Backbone:pHR-dSV40; Vector Types:Mammalian Expression, Lentiviral; Bacterial Resistance:Ampicillin
Defining Citation: PMID:40273247
Comments: Created by Gibson assembly using MluI (5') and NotI (3') sites. Please visit https://doi.org/10.1101/2024.05.08.593169 for bioRxiv preprint.
Proper citation: RRID:Addgene_233926 Copy
Species: Homo sapiens
Genetic Insert: AEBP2 [Isoform 3]
Vector Backbone Description: Vector Backbone:pYTK001; Vector Types:Unspecified; Bacterial Resistance:Chloramphenicol
Defining Citation: PMID:39814169
Proper citation: RRID:Addgene_234573 Copy
Species: Synthetic
Genetic Insert: CHARMS-DHF
Vector Backbone Description: Vector Backbone:pHR-dSV40; Vector Types:Mammalian Expression, Lentiviral; Bacterial Resistance:Ampicillin
Defining Citation: PMID:40273247
Comments: Contains the Designed Helical Filament Protein 91 from Shen et al. 2018 (PMID: 30409885, doi: https://doi.org/10.1126/science.aau3775). Created by Gibson assembly using MluI (5') and NotI (3') sites. Please visit https://doi.org/10.1101/2024.05.08.593169 for bioRxiv preprint.
Proper citation: RRID:Addgene_233922 Copy
Species: Bos taurus
Genetic Insert: Arrestin-2
Vector Backbone Description: Vector Backbone:pcDNA3; Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:21466165
Proper citation: RRID:Addgene_234803 Copy
Species: Bos taurus
Genetic Insert: Arrestin-2
Vector Backbone Description: Vector Backbone:pcDNA3; Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:21466165
Proper citation: RRID:Addgene_234804 Copy
Species: Bos taurus
Genetic Insert: Arrestin-3
Vector Backbone Description: Vector Backbone:pcDNA3; Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:21466165
Proper citation: RRID:Addgene_234805 Copy
Genetic Insert: DjCas13d
Vector Backbone Description: Vector Backbone:pET-28b-Cas9-His; Vector Types:Bacterial Expression, CRISPR; Bacterial Resistance:Kanamycin
Defining Citation: PMID:40091120
Comments: DjCas13d ORF was codon optimized for zebrafish using iCodon (www.iCodon.org), purchased from IDT (https://eu.idtdna.com/) and cloned into pET28b vector after NcoI / NotI restriction enzyme digestion.
Please visit https://doi.org/10.1101/2024.10.08.617220 for bioRxiv preprint.
Proper citation: RRID:Addgene_234481 Copy
Species: West Nile virus
Genetic Insert: NS2B_WestNileVirus
Vector Backbone Description: Vector Backbone:pET28a-LIC; Vector Types:Bacterial Expression; Bacterial Resistance:Kanamycin
Proper citation: RRID:Addgene_234403 Copy
Species: Zika virus
Genetic Insert: NS2B_ZIKV
Vector Backbone Description: Vector Backbone:pET28a-LIC; Vector Types:Bacterial Expression; Bacterial Resistance:Kanamycin
Proper citation: RRID:Addgene_234404 Copy
Species: Bos taurus
Genetic Insert: Arrestin-3
Vector Backbone Description: Vector Backbone:pcDNA3; Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:22523077
Proper citation: RRID:Addgene_234801 Copy
Species: Bos taurus
Genetic Insert: Arrestin-3
Vector Backbone Description: Vector Backbone:pcDNA3; Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:37371033
Proper citation: RRID:Addgene_234802 Copy
Species: Homo sapiens
Genetic Insert: L1HS gRNA
Vector Backbone Description: Vector Backbone:pLV hU6-sgRNA hUbC-dCas9-KRAB-T2a-GFP; Vector Types:Mammalian Expression, Lentiviral, CRISPR; Bacterial Resistance:Ampicillin
Comments: Please visit https://doi.org/10.1101/2025.01.17.633315 for bioRxiv preprint.
Proper citation: RRID:Addgene_234883 Copy
Species: Homo sapiens
Genetic Insert: Von Willebrand factor
Vector Backbone Description: Backbone Marker:Robert Campbell & Michael Davidson & Roger Tsien (Addgene plasmid # 54635); Vector Backbone:pmRFP1-N1; Vector Types:Mammalian Expression; Bacterial Resistance:Kanamycin
Defining Citation: PMID:35767558
Proper citation: RRID:Addgene_234367 Copy
Vector Backbone Description: Backbone Marker:Twist Biosciences; Vector Backbone:pTwist Kan High Copy v2; Vector Types:Mammalian Expression; Bacterial Resistance:Kanamycin
Proper citation: RRID:Addgene_233944 Copy
Species: Ruminococcus flavefaciens XPD3002
Genetic Insert: RfxCas13d
Vector Backbone Description: Vector Backbone:pT3TS; Vector Types:CRISPR; Bacterial Resistance:Ampicillin
Defining Citation: PMID:40091120
Comments: Point mutations performed as described in Tong et al., 2023 (Nat Bio) to generate a High-Fidelity version of RfxCas13d (Hf-RfxCas13d).
Please visit https://doi.org/10.1101/2024.10.08.617220 for bioRxiv preprint.
Proper citation: RRID:Addgene_234479 Copy
Genetic Insert: quorum sensing cassette luxI, luxR, and the LuxR-dependent promoter pLuxI , dCas12a and sgRNA design (C) of gfp gene
Vector Backbone Description: Backbone Size:3876; Vector Backbone:pBBRMCS2; Vector Types:CRISPR; Bacterial Resistance:Kanamycin
Defining Citation: PMID:41021780
Proper citation: RRID:Addgene_236042 Copy
Genetic Insert: quorum sensing cassette luxI, mutated luxR, and the LuxR-dependent promoter pLuxI , dCas12a and sgRNA design (B) of gfp gene
Vector Backbone Description: Backbone Size:3876; Vector Backbone:pBBRMCS2; Vector Types:CRISPR; Bacterial Resistance:Kanamycin
Defining Citation: PMID:41021780
Proper citation: RRID:Addgene_236041 Copy
Species: Synthetic
Genetic Insert: NL4-3 EcoHIV mScarlet
Vector Backbone Description: Backbone Size:2686; Vector Backbone:pUC18; Vector Types:Lentiviral; Bacterial Resistance:Ampicillin
Defining Citation: PMID:39760359
Comments: The construct is a modification of pNL4-3-EcoHIV ( M.J. Potash, W. Chao, G. Bentsman, N. Paris, M. Saini, J. Nitkiewicz, P. Belem, L. Sharer, A.I. Brooks, & D.J. Volsky, A mouse model for study of systemic HIV-1 infection, antiviral immune responses, and neuroinvasiveness, Proc. Natl. Acad. Sci. U.S.A. 102 (10) 3760-3765, https://doi.org/10.1073/pnas.0500649102 (2005).) with inserted mScarlet.
Proper citation: RRID:Addgene_235598 Copy
Genetic Insert: quorum sensing cassette luxI, mutated luxR, and the LuxR-dependent promoter pLuxI , dCas12a and sgRNA design (B) of gfp gene
Vector Backbone Description: Backbone Size:4218; Vector Backbone:pBBRMCS2; Vector Types:CRISPR; Bacterial Resistance:Kanamycin
Defining Citation: PMID:41021780
Proper citation: RRID:Addgene_236040 Copy
Species: Homo sapiens
Genetic Insert: pCAG-SpyTag-Flag-dNS-SRRM1-V5-mCherry
Vector Backbone Description: Vector Backbone:pCAG-MCP-DEST-V5-mCherry; Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:38720076
Proper citation: RRID:Addgene_235096 Copy
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