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URL: https://github.com/haowenz/chromap
Proper Citation: chromap (RRID:SCR_029148)
Description: Software tool for alignment and preprocessing of high-throughput chromatin profiling sequencing data, including ATAC-seq, single-cell ATAC-seq, ChIP-seq, and Hi-C. Supports genomic read mapping, adapter trimming, duplicate removal, barcode correction, and quality control analysis, enabling efficient processing of bulk and single-cell sequencing datasets. Used for aligning and preprocessing high throughput chromatin profiles.
Resource Type: software application, software resource, source code
Defining Citation: PMID:34772935
Keywords: aligning and preprocessing high throughput chromatin profiles, chromatin profiling sequencing data,
Funding: NCI U01CA226196; NHGRI R01HG010040; NHGRI R01HG011139
Availability: Free, Available for download, Freely available
Resource Name: chromap
Resource ID: SCR_029148
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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