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URL: https://oncodb.org/
Proper Citation: OncoDB (RRID:SCR_028340)
Description: Database offers integrated multi-omic data for patients across 33 cancer types. It encompasses gene expression, DNA methylation, somatic mutations, proteomic profiles, and chromatin accessibility, drawing from TCGA, GTEx, and CPTAC projects. Users can compare gene expression, DNA methylation, and protein levels between tumor and normal tissues, identifying differentially expressed genes and proteins, and examining gene-to-gene correlations. Provides oncogene mutation profiles and allows for survival analysis based on gene expression and methylation, linked to clinical parameters. Facilitates exploration of multi-omic correlations, such as gene expression with DNA methylation, and their variations with mutation status. Extends its analytical capabilities to include six major oncoviruses, offering insights into their impact on gene expression, methylation, and patient survival.
Synonyms: OncoDB2.0
Resource Type: data or information resource, database
Defining Citation: PMID:34718715, PMID:40995640
Keywords: cancer patients data, gene expression, DNA methylation, somatic mutations, proteomic profiles, chromatin accessibility,
Funding: NCI R01CA287778; NIDCR R01DE026471; NIGMS R35GM141535
Availability: Free, Freely available,
Resource Name: OncoDB
Resource ID: SCR_028340
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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