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URL: https://bioconductor.org/packages/release/bioc/html/tximeta.html
Proper Citation: tximeta (RRID:SCR_028005)
Description: Software R package for reference sequence checksums for provenance identification in RNA-seq. Performs numerous annotation and metadata gathering tasks on behalf of users during the import of transcript counts and abundance from quantification tools such as salmon. Data are imported as SummarizedExperiment objects with associated GenomicRanges metadata. Correct metadata is added automatically via reference sequence digests, facilitating genomic analyses and assisting in computational reproducibility.
Synonyms: Tximeta
Resource Type: software resource, software toolkit
Defining Citation: PMID:32097405
Keywords: reference sequence checksums, provenance identification in RNA-seq, numerous annotation, metadata gathering,
Funding: NCI P01 CA142538; NHGRI R01 HG009937; NHGRI U41 HG004059; NIEHS P30 ES010126; NIMH R01 MH118349
Availability: Free, Available for download, Freely available
Resource Name: tximeta
Resource ID: SCR_028005
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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