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URL: https://github.com/QuackenbushLab/NetworkDataCompanion
Proper Citation: NetworkDataCompanion (RRID:SCR_026532)
Description: Software R library of utilities for performing analyses on TCGA and GTEx data using the Network Zoo. Streamlines routine steps in TCGA data processing, including filtering and mapping gene and sample identifiers between modalities and allows modality-specific data transformation, such as normalization and cleaning.
Resource Type: software library, software resource, software toolkit, source code
Defining Citation: PMID:39574772
Keywords: TCGA and GTEx data analysis, TCGA data processing, filtering and mapping gene, normalization and cleaning,
Funding: American Lung Association ; NCI P50CA127003; NCI R35CA220523; NCI U24CA231846; NHGRI R01HG011393; NHGRI R01HG125975; NHLBI K01HL166376; NHLBI P01HL114501; NHLBI T32HL007427
Availability: Free, Available for download, Freely available
Resource Name: NetworkDataCompanion
Resource ID: SCR_026532
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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