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URL: https://github.com/broadinstitute/ichorCNA
Proper Citation: ichorCNA (RRID:SCR_024768)
Description: Software tool that quantifies tumor content in cfDNA from 0.1× coverage whole-genome sequencing data without prior knowledge of tumor mutations. Used to simultaneously segment genome, predict large scale copy number alterations, and estimate tumor fraction of ultra low pass whole genome sequencing sample.
Resource Type: simulation software, software resource, software application
Defining Citation: PMID:29109393
Keywords: quantify tumor content, simultaneously segment genome, predict large scale copy number alterations, estimate tumor fraction, ultra low pass whole genome sequencing sample,
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