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URL: https://github.com/genome/bam-readcount
Proper Citation: bam readcount (RRID:SCR_023653)
Description: Software tool that runs on BAM or CRAM file and generates low level information about sequencing data at specific nucleotide positions. Its outputs include observed bases, readcounts, summarized mapping and base qualities, strandedness information, mismatch counts, and position within the reads.
Synonyms: bam-readcount
Resource Type: software application, software resource
Defining Citation: PMID:34341766
Keywords: BAM file, CRAM file, sequencing data, nucleotide positions,
Funding: Edward P. Evans Foundation ; NCI 1U01CA209936; NCI K22CA188163; NCI P01CA101937; NCI R50CA211782; NCI U24CA237719; NHGRI R00 HG007940
Availability: Free, Available for download, Freely available
Resource Name: bam readcount
Resource ID: SCR_023653
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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