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Resource Name

Megadepth

RRID:SCR_022779 RRID Copied

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Megadepth (RRID:SCR_022779)

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Resource Information

URL: https://github.com/ChristopherWilks/megadepth

Proper Citation: Megadepth (RRID:SCR_022779)

Description: Software tool for quantifying alignments and coverage for BigWig and BAM/CRAM input files.Quantifies number of RNA-seq reads assigned to gene in BAM file, successor of bamcounts.

Resource Type: data analysis software, data processing software, software application, software resource

Defining Citation: PMID:33693500

Keywords: quantifying alignments, BigWig and BAM/CRAM input files, RNA-seq reads assigned to gene in BAM file quantification,

Funding: NIGMS R01GM118568; NIGMS R01GM121459; UK Medical Research Council

Availability: Free, Available for download, Freely available

Resource Name: Megadepth

Resource ID: SCR_022779

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Usage and Citation Metrics

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Data and Source Information

Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400

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