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URL: https://github.com/zdk123/SpiecEasi
Proper Citation: SpiecEasi (RRID:SCR_022712)
Description: Software R package for microbiome network analysis. Used for inference of microbial ecological networks from amplicon sequencing datasets. Combines data transformations developed for compositional data analysis with graphical model inference framework that assumes underlying ecological association network is sparse.
Abbreviations: SpiecEasi
Synonyms: SParse InversE Covariance Estimation for Ecological Association Inference
Resource Type: data analysis software, data processing software, software application, software resource
Defining Citation: PMID:25950956
Keywords: microbiome network analysis, amplicon sequencing datasets, microbial ecological networks inference
Funding: NIAID AI007180; NIDDK DK103358; NIGMS GM63270; Simons Foundation
Availability: Free, Available for download, Freely available
Resource Name: SpiecEasi
Resource ID: SCR_022712
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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