Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Resource Summary Report New Search

Resource Name

Smart-seq2 Single Sample Pipeline

RRID:SCR_021228 RRID Copied

PDF Report How to cite

Smart-seq2 Single Sample Pipeline (RRID:SCR_021228)

Copy Citation Copied

Resource Information

URL: https://github.com/broadinstitute/warp/blob/master/pipelines/skylab/smartseq2_single_sample/SmartSeq2SingleSample.wdl

Proper Citation: Smart-seq2 Single Sample Pipeline (RRID:SCR_021228)

Description: Software tool designed by Data Coordination Platform of Human Cell Atlas to process single-cell RNAseq data generated by Smart-seq2 assays.Processes stranded or unstranded, paired- or single-end, scRNA-seq data from an individual cell.

Resource Type: software toolkit, software resource, data processing software, software application

Keywords: scRNAseq data, Smart-seq2 assays, processing scRNA-seq data from individual cell

Expand All

Funding:

Availability: Free, Freely available

Resource Name: Smart-seq2 Single Sample Pipeline

Resource ID: SCR_021228

Alternate URLs: https://broadinstitute.github.io/warp/docs/Pipelines/Smart-seq2_Single_Sample_Pipeline/README

Old URLs: https://github.com/broadinstitute/warp/tree/master/pipelines/skylab/smartseq2_single_sample

Record Creation Time: 2022-01-29 12:03:54

Record Last Update: 2025-04-03 11:15:13

This resource

has parent organization

Broad Institute

Usage and Citation Metrics

We found {{ ctrl2.mentions.total_count }} mentions in open access literature.

We have not found any literature mentions for this resource.

We are searching literature mentions for this resource.

View full usage report

Most recent articles:

{{ mention._source.dc.creators[0].familyName }} {{ mention._source.dc.creators[0].initials }}, et al. ({{ mention._source.dc.publicationYear }}) {{ mention._source.dc.title }} {{ mention._source.dc.publishers[0].name }}, {{ mention._source.dc.publishers[0].volume }}({{ mention._source.dc.publishers[0].issue }}), {{ mention._source.dc.publishers[0].pagination }}. (PMID:{{ mention._id.replace('PMID:', '') }})

Checkfor all resource mentions.

Collaborator Network

A list of researchers who have used the resource and an author search tool

Find mentions based on location

A list of researchers who have used the resource and an author search tool. This is available for resources that have literature mentions.

Ratings and Alerts

Report Information

No rating or validation information has been found for Smart-seq2 Single Sample Pipeline.

No alerts have been found for Smart-seq2 Single Sample Pipeline.

Data and Source Information

Source: SciCrunch Registry

About

Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.