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URL: http://api.brain-map.org/api/v2/structure_graph_download/1.json
Proper Citation: Allen Mouse Reference Atlas Ontology (RRID:SCR_021000)
Description: Developed for Allen Reference Atlas and follows terminology from Brain Maps: Structure for the Rat Brain (Swanson, 2004, 2018). The ontology has been subsequently extended and revised to also serve as structure ontology for Allen Mouse Common Coordinate Framework.Defines hierarchical partonomy of anatomical structures of adult mouse brain. At top level, brain is divided into gray matter, fiber tracts and ventricular systems. Gray matter is subdivided into cerebrum, brain stem, and cerebellum, which are themselves organized into subregions in hierarchical tree.
Resource Type: controlled vocabulary, data or information resource, ontology
Defining Citation: PMID:32386544
Keywords: structure ontology, brain structure, ontology, hierarchical partonomy, anatomical structures
Availability: Free, Freely available
Resource Name: Allen Mouse Reference Atlas Ontology
Resource ID: SCR_021000
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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