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URL: https://delaney.shinyapps.io/CAIRN/
Proper Citation: CAIRN (RRID:SCR_019101)
Description: Web tool to graph all copy number alterations present in segment file. Custom data is permitted. Allows to display copy number alterations which overlap user specified region, to quantify number of amplified CNAs and deleted CNAs. Visualization tool to explore copy number alterations discovered in published cancer datasets. Intended to help oncology community observe of relative rates of amplification, deletion, and mutation of interesting genes and regions.
Synonyms: Copy Alterations Intuitive Rendering Navigator
Resource Type: data access protocol, data processing software, data visualization software, software application, software resource, web service
Defining Citation: PMID:31923184
Keywords: Deleted CNAs quantification, Copy Number Alterations, segment file, data visualization, published cancer datasets CNAs, amplified CNA quantification
Funding: NCI CA102310; NCI CA107263; NCI CA177519; NCI CA207729; NCI P30 CA138313; NIA AG033082; NIGMS GM132055; Nine Girls Ask Foundation
Availability: Free, Available for download, Freely available
Resource Name: CAIRN
Resource ID: SCR_019101
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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