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URL: https://github.com/pachterlab/kb_python
Proper Citation: kb_python (RRID:SCR_018213)
Description: Software Python package that wraps kallisto and bustools single-cell RNA-seq workflow. Used for single-cell RNA-seq pre-processing. Simplifies downloading and running of kallisto and bustools programs. Consists of kb ref and kb count commands. kb ref builds or downloads species specific index for pseudo alignment of reads and must be run prior to kb count and it runs kallisto index. kb count runs kallisto and bustools programs and is used for pre-processing of data from variety of single-cell RNA-seq technologies, and for number of different workflows (e.g. production of gene count matrices, RNA velocity analyses, etc.).
Resource Type: software resource, software toolkit
Defining Citation: DOI:10.1038/nbt.3519, DOI:10.1101/673285
Keywords: Wrapper, single cell RNA seq, pre-processing, species specific index, pseudo alignment, read, gene count matrice, RNA velocity analysis, data
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