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Proper Citation: BPS- Database of RNA Base-pair Structures (RRID:SCR_007568)
Description: BPS is a database of RNA base pairs with quantitative information on the spatial arrangements of interacting bases, including higher-order base associations, and the context of these interactions in high-resolution crystal structures. The structures are taken from the Nucleic Acid Database (NDB), and the base pairs are identified and characterized with the 3DNA software package. The interactions are classified in terms of residue identities, base-pair positioning, and hydrogen-bonding patterns and related to the structural context in which they occur. A user can browse the atlas of base-pair patterns and carry out searches for patterns of specific types or from specific structures.
Synonyms: BPS
Resource Type: data or information resource, database
Keywords: 3dna software, base pair position, hydrogen bonding pattern, residue identity, rna, rna base pairs, rna crystal structure, rna spatial arrangement, rna structure
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