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URL: http://research-pub.gene.com/gmap/
Proper Citation: GSNAP (RRID:SCR_005483)
Description: Software to align single and paired end reads as short as 14 nt and of arbitrarily long length. Can detect short and long distance splicing, including interchromosomal splicing, in individual reads, using probabilistic models or database of known splice sites. Permits SNP-tolerant alignment to reference space of all possible combinations of major and minor alleles, and can align reads from bisulfite-treated DNA for study of methylation state.
Abbreviations: GSNAP
Synonyms: Genomic Short-read Nucleotide Alignment Program
Resource Type: alignment software, data processing software, image analysis software, software application, software resource
Defining Citation: PMID:20147302
Keywords: next-generation sequencing, bio.tools, FASEB list
Resource Name: GSNAP
Resource ID: SCR_005483
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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