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Resource Name

ImageJ

RRID:SCR_003070 RRID Copied

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ImageJ (RRID:SCR_003070)

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Resource Information

URL: https://imagej.net/

Proper Citation: ImageJ (RRID:SCR_003070)

Description: Open source Java based image processing software program designed for scientific multidimensional images. ImageJ has been transformed to ImageJ2 application to improve data engine to be sufficient to analyze modern datasets.

Synonyms: Image J, ImageJ - Image Processing and Analysis in Java, ImageJ2, ImageJ

Resource Type: data processing software, image analysis software, image processing software, software application, software resource, software toolkit

Defining Citation: PMID:22930834, PMID:29187165, DOI:10.1038/nmeth.2089

Keywords: image, data, processing, analysis, datasets, visualization,

Funding: NIGMS RC2 GM092519; NIH ; NIMH ; NINDS ; the Laboratory for Optical and Computational Instrumentation ; the Morgridge Institute for Research ; Wellcome Trust Strategic Award 095931

Availability: Free, Available for download, Freely available

Resource Name: ImageJ

Resource ID: SCR_003070

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Alternate IDs: ascl:1206.013, rid_000070, Q1659584, 2012ascl.soft06013R, SCR_018407, nif-0000-30467

Alternate URLs: https://imagej.net/ij/, http://rsbweb.nih.gov/ij, https://imagej.nih.gov/ij/download.html, https://imagej.nih.gov/ij/, https://sources.debian.org/src/imagej/,

Old URLs: https://imagej.nih.gov/ij/, http://www.nitrc.org/projects/incf_imagej,

License: Simplified (2-clause) Berkeley Software Distribution (BSD)

Authority: SciCrunch Registry

Record Creation Time: 2022-01-29 12:02:17

Record Last Update: 2026-09-19 12:55:06

This resource

uses	NeuriteTracer
is used by	Mouse Behavioral Analysis Toolbox
is used by	Focinator
is listed by	NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by	Debian
is listed by	SoftCite
is related to	uManager
is related to	Fiji
is related to	NIH Image
is related to	TrakEM2
is related to	BioVoxxel Toolbox
is related to	Golddigger
is related to	Analyze Complex Roots Tool
is related to	Analyze Spheroid Cell Invasion In 3D Matrix
is related to	PyImageJ
has parent organization	Research Services Branch National Institutes of Mental Health
has plug in	Diffusing Tensor Imaging in Java
has plug in	OrientationJ
has plug in	GRatio for ImageJ
has plug in	BioVoxxel Toolbox
has plug in	WormSizer
has plug in	MultiStackReg
has plug in	Iterative Deconvolve 3D
has plug in	Thunder STORM
has plug in	Whisker tracking macro
has plug in	3D Roi Manager
has plug in	3D Objects Counter
has plug in	BoneJ
has plug in	QuickFigures
has plug in	ObjectJ
has plug in	ADAPT
has plug in	DHM Utilities
has plug in	Sholl Analysis
has plug in	nTracer
has plug in	IHC Profiler
has plug in	MicrobeJ
has plug in	AccPbFRET
has plug in	RiFRET
has plug in	JaCoP
has plug in	Cell Counter Plugin for ImageJ
has plug in	Puncta Analyzer
has plug in	SpinalJ
has plug in	ColonyArea
works with	Intensity Ratio Nuclei Cytoplasm Tool
works with	3D ImageJ Suite
works with	Wound Healing Tool
works with	MorphoLibJ

Usage and Citation Metrics

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Data and Source Information

Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400

About

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